Protein–RNA interactions for Protein: Q3ULJ3

Upf3a, MCG3697, isoform CRA_c, mousemouse

Predictions only

Length 422 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3aQ3ULJ3 1700125G02Rik-201ENSMUST00000154947 519 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
Upf3aQ3ULJ3 1700017B05Rik-204ENSMUST00000215298 1023 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
Upf3aQ3ULJ3 Gm46218-201ENSMUST00000215448 801 ntTSL 5 BASIC20.98■□□□□ 0.95
Upf3aQ3ULJ3 B3galnt1-201ENSMUST00000061826 2028 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Upf3aQ3ULJ3 Zranb1-202ENSMUST00000106157 5008 ntAPPRIS P2 TSL 5 BASIC20.98■□□□□ 0.95
Upf3aQ3ULJ3 Serbp1-207ENSMUST00000203436 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
Upf3aQ3ULJ3 Mrpl12-201ENSMUST00000043627 1316 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Upf3aQ3ULJ3 Mau2-206ENSMUST00000212451 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
Upf3aQ3ULJ3 BC005561-201ENSMUST00000096452 5409 ntAPPRIS P1 TSL 2 BASIC20.97■□□□□ 0.95
Upf3aQ3ULJ3 Qk-201ENSMUST00000042296 6718 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
Upf3aQ3ULJ3 Aurkaip1-203ENSMUST00000105592 1029 ntAPPRIS P1 TSL 2 BASIC20.97■□□□□ 0.95
Upf3aQ3ULJ3 Spcs1-201ENSMUST00000186131 1005 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
Upf3aQ3ULJ3 Tcf4-246ENSMUST00000202116 2986 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
Upf3aQ3ULJ3 Gucd1-211ENSMUST00000219774 806 ntTSL 3 BASIC20.97■□□□□ 0.95
Upf3aQ3ULJ3 Dtymk-201ENSMUST00000027503 1003 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Upf3aQ3ULJ3 Dalrd3-201ENSMUST00000019183 1746 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Upf3aQ3ULJ3 Ptpn4-203ENSMUST00000163435 2365 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
Upf3aQ3ULJ3 Syde2-201ENSMUST00000039517 5495 ntAPPRIS P2 TSL 1 (best) BASIC20.97■□□□□ 0.95
Upf3aQ3ULJ3 Cant1-205ENSMUST00000106289 1600 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
Upf3aQ3ULJ3 Gm26766-202ENSMUST00000227544 2347 ntBASIC20.96■□□□□ 0.95
Upf3aQ3ULJ3 Gm20634-201ENSMUST00000090779 2956 ntBASIC20.96■□□□□ 0.95
Upf3aQ3ULJ3 Smkr-ps-202ENSMUST00000141679 901 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
Upf3aQ3ULJ3 C230062I16Rik-202ENSMUST00000207746 1022 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
Upf3aQ3ULJ3 Tmem53-201ENSMUST00000062824 991 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Upf3aQ3ULJ3 Ptrh1-201ENSMUST00000066352 952 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Upf3aQ3ULJ3 Cdkn1c-201ENSMUST00000037287 1901 ntAPPRIS P3 TSL 1 (best) BASIC20.96■□□□□ 0.95
Upf3aQ3ULJ3 Ing1-201ENSMUST00000054399 2814 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Upf3aQ3ULJ3 Fance-202ENSMUST00000114801 1751 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
Upf3aQ3ULJ3 Shisa4-201ENSMUST00000041240 1763 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Upf3aQ3ULJ3 Memo1-201ENSMUST00000078459 1513 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Upf3aQ3ULJ3 Klc1-201ENSMUST00000084941 2504 ntAPPRIS P3 TSL 1 (best) BASIC20.95■□□□□ 0.94
Upf3aQ3ULJ3 Gm4881-201ENSMUST00000206705 1152 ntAPPRIS P1 TSL 5 BASIC20.95■□□□□ 0.94
Upf3aQ3ULJ3 Ypel3-201ENSMUST00000038614 973 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Upf3aQ3ULJ3 Tfg-201ENSMUST00000065515 1945 ntAPPRIS P2 TSL 1 (best) BASIC20.95■□□□□ 0.94
Upf3aQ3ULJ3 Hopxos-201ENSMUST00000148568 1661 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
Upf3aQ3ULJ3 P2rx2-203ENSMUST00000195985 2096 ntAPPRIS P4 TSL 1 (best) BASIC20.94■□□□□ 0.94
Upf3aQ3ULJ3 Pts-208ENSMUST00000215416 439 ntTSL 2 BASIC20.94■□□□□ 0.94
Upf3aQ3ULJ3 A930018P22Rik-201ENSMUST00000040374 822 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Upf3aQ3ULJ3 Lsm12-201ENSMUST00000021297 2256 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Upf3aQ3ULJ3 Puf60-202ENSMUST00000100527 1878 ntAPPRIS P4 TSL 1 (best) BASIC20.94■□□□□ 0.94
Upf3aQ3ULJ3 Aplf-201ENSMUST00000032130 1889 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Upf3aQ3ULJ3 A930001C03Rik-204ENSMUST00000154407 1402 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
Upf3aQ3ULJ3 Gyg-201ENSMUST00000118015 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
Upf3aQ3ULJ3 Sh3gl1-201ENSMUST00000003268 2072 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Upf3aQ3ULJ3 Klhdc10-202ENSMUST00000068259 5901 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Upf3aQ3ULJ3 Rab6b-202ENSMUST00000189134 716 ntTSL 3 BASIC20.93■□□□□ 0.94
Upf3aQ3ULJ3 Krtcap3-205ENSMUST00000201625 902 ntAPPRIS P1 TSL 5 BASIC20.93■□□□□ 0.94
Upf3aQ3ULJ3 A730056A06Rik-202ENSMUST00000206959 526 ntTSL 3 BASIC20.93■□□□□ 0.94
Upf3aQ3ULJ3 Zfand3-202ENSMUST00000226208 923 ntAPPRIS P1 BASIC20.93■□□□□ 0.94
Upf3aQ3ULJ3 Phf14-203ENSMUST00000115511 3336 ntAPPRIS P1 TSL 5 BASIC20.93■□□□□ 0.94
Upf3aQ3ULJ3 Trim47-201ENSMUST00000021120 2204 ntAPPRIS P4 TSL 1 (best) BASIC20.93■□□□□ 0.94
Upf3aQ3ULJ3 Shisa5-202ENSMUST00000112059 1910 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
Upf3aQ3ULJ3 Sh3bp1-203ENSMUST00000089378 2001 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Upf3aQ3ULJ3 Gm20431-201ENSMUST00000125544 2367 ntAPPRIS P1 TSL 5 BASIC20.92■□□□□ 0.94
Upf3aQ3ULJ3 2510002D24Rik-202ENSMUST00000123146 361 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
Upf3aQ3ULJ3 Nfe2l3-203ENSMUST00000160133 1125 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
Upf3aQ3ULJ3 Cyyr1-204ENSMUST00000175700 1294 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
Upf3aQ3ULJ3 Prmt1-210ENSMUST00000208829 621 ntTSL 5 BASIC20.92■□□□□ 0.94
Upf3aQ3ULJ3 Rras-201ENSMUST00000044111 995 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Upf3aQ3ULJ3 Ugdh-201ENSMUST00000031103 2550 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Upf3aQ3ULJ3 Trip10-207ENSMUST00000224947 2016 ntAPPRIS P2 BASIC20.92■□□□□ 0.94
Upf3aQ3ULJ3 Slc30a1-201ENSMUST00000044954 5244 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Upf3aQ3ULJ3 St6galnac6-205ENSMUST00000113290 2402 ntAPPRIS ALT1 TSL 5 BASIC20.91■□□□□ 0.94
Upf3aQ3ULJ3 Cacna2d2-205ENSMUST00000168532 5807 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
Upf3aQ3ULJ3 Ap3s1-204ENSMUST00000225520 957 ntBASIC20.91■□□□□ 0.94
Upf3aQ3ULJ3 Tceanc2-201ENSMUST00000030362 935 ntAPPRIS P1 TSL 3 BASIC20.91■□□□□ 0.94
Upf3aQ3ULJ3 Ing2-201ENSMUST00000080353 2812 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Upf3aQ3ULJ3 Bspry-201ENSMUST00000030088 1757 ntAPPRIS P2 TSL 1 (best) BASIC20.9■□□□□ 0.94
Upf3aQ3ULJ3 Grap-201ENSMUST00000004959 1662 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Upf3aQ3ULJ3 Gm7102-201ENSMUST00000180168 1624 ntAPPRIS P1 BASIC20.9■□□□□ 0.94
Upf3aQ3ULJ3 Fah-201ENSMUST00000032865 1585 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Upf3aQ3ULJ3 Gm11627-201ENSMUST00000107080 585 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Upf3aQ3ULJ3 Gm12669-201ENSMUST00000122162 1009 ntBASIC20.9■□□□□ 0.94
Upf3aQ3ULJ3 Gm7514-201ENSMUST00000209475 934 ntBASIC20.9■□□□□ 0.94
Upf3aQ3ULJ3 Lbx1-201ENSMUST00000099401 2484 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Upf3aQ3ULJ3 Cebpa-202ENSMUST00000205391 2161 ntTSL 5 BASIC20.9■□□□□ 0.94
Upf3aQ3ULJ3 Stbd1-201ENSMUST00000050952 1985 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Upf3aQ3ULJ3 Dpy19l1-206ENSMUST00000170356 4715 ntAPPRIS P1 TSL 5 BASIC20.9■□□□□ 0.94
Upf3aQ3ULJ3 Brd1-203ENSMUST00000109381 4886 ntTSL 5 BASIC20.89■□□□□ 0.94
Upf3aQ3ULJ3 Rbm39-202ENSMUST00000109584 667 ntTSL 5 BASIC20.89■□□□□ 0.93
Upf3aQ3ULJ3 Gm12660-201ENSMUST00000123764 664 ntTSL 3 BASIC20.89■□□□□ 0.93
Upf3aQ3ULJ3 Sco2-201ENSMUST00000167643 1143 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Upf3aQ3ULJ3 Prcd-205ENSMUST00000178875 1227 ntTSL 5 BASIC20.89■□□□□ 0.93
Upf3aQ3ULJ3 AC167978.1-201ENSMUST00000182488 456 ntTSL 3 BASIC20.89■□□□□ 0.93
Upf3aQ3ULJ3 AC121965.1-201ENSMUST00000221422 861 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
Upf3aQ3ULJ3 Insc-208ENSMUST00000169913 2321 ntAPPRIS P1 TSL 5 BASIC20.89■□□□□ 0.93
Upf3aQ3ULJ3 Usp21-203ENSMUST00000111306 2185 ntAPPRIS ALT1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Upf3aQ3ULJ3 Diablo-203ENSMUST00000111587 1576 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Upf3aQ3ULJ3 Olig3-201ENSMUST00000053225 2072 ntAPPRIS P1 BASIC20.89■□□□□ 0.93
Upf3aQ3ULJ3 2410004B18Rik-201ENSMUST00000039571 1547 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Upf3aQ3ULJ3 Sap30-201ENSMUST00000034022 1178 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Upf3aQ3ULJ3 Hist1h2ap-201ENSMUST00000081342 482 ntAPPRIS P1 BASIC20.88■□□□□ 0.93
Upf3aQ3ULJ3 Raph1-201ENSMUST00000027168 2241 ntAPPRIS ALT2 TSL 5 BASIC20.88■□□□□ 0.93
Upf3aQ3ULJ3 Rgs19-202ENSMUST00000108769 1460 ntTSL 2 BASIC20.88■□□□□ 0.93
Upf3aQ3ULJ3 Cnot6-203ENSMUST00000145353 5736 ntAPPRIS P1 TSL 5 BASIC20.87■□□□□ 0.93
Upf3aQ3ULJ3 Agap2-201ENSMUST00000039259 5633 ntAPPRIS P2 TSL 1 (best) BASIC20.87■□□□□ 0.93
Upf3aQ3ULJ3 Klhl22-201ENSMUST00000117192 2754 ntTSL 5 BASIC20.87■□□□□ 0.93
Upf3aQ3ULJ3 Ube2q1-201ENSMUST00000038356 3077 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Upf3aQ3ULJ3 Nxph4-201ENSMUST00000095266 1675 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Upf3aQ3ULJ3 Neurl4-202ENSMUST00000108617 4892 ntAPPRIS ALT2 TSL 5 BASIC20.87■□□□□ 0.93
Retrieved 100 of 76,532 protein–RNA pairs in 42.8 ms