Protein–RNA interactions for Protein: Q1W617

Shroom4, Protein Shroom4, mousemouse

Predictions only

Length 1,475 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shroom4Q1W617 Hpse-202ENSMUST00000112908 1958 ntAPPRIS ALT2 TSL 1 (best) BASIC31.98■■■□□ 2.71
Shroom4Q1W617 Pi4kb-207ENSMUST00000167008 1962 ntTSL 1 (best) BASIC31.98■■■□□ 2.71
Shroom4Q1W617 Msantd1-203ENSMUST00000202205 744 ntTSL 2 BASIC31.97■■■□□ 2.71
Shroom4Q1W617 Vgll2-201ENSMUST00000058347 966 ntAPPRIS ALT2 TSL 1 (best) BASIC31.97■■■□□ 2.71
Shroom4Q1W617 Hoxb6-201ENSMUST00000000704 1321 ntAPPRIS P1 TSL 1 (best) BASIC31.97■■■□□ 2.71
Shroom4Q1W617 Cpsf4-202ENSMUST00000160422 1756 ntAPPRIS ALT1 TSL 5 BASIC31.97■■■□□ 2.71
Shroom4Q1W617 P2rx2-203ENSMUST00000195985 2096 ntAPPRIS P4 TSL 1 (best) BASIC31.97■■■□□ 2.71
Shroom4Q1W617 Mir5133-201ENSMUST00000174955 77 ntBASIC31.97■■■□□ 2.71
Shroom4Q1W617 Gm4968-201ENSMUST00000071458 858 ntBASIC31.97■■■□□ 2.71
Shroom4Q1W617 Htatip2-202ENSMUST00000207895 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC31.97■■■□□ 2.71
Shroom4Q1W617 Acot8-202ENSMUST00000103094 1152 ntAPPRIS P1 TSL 1 (best) BASIC31.96■■■□□ 2.71
Shroom4Q1W617 Nespas-201ENSMUST00000143738 1083 ntBASIC31.96■■■□□ 2.71
Shroom4Q1W617 Acot8-201ENSMUST00000017451 1055 ntTSL 1 (best) BASIC31.96■■■□□ 2.71
Shroom4Q1W617 Stbd1-201ENSMUST00000050952 1985 ntAPPRIS P1 TSL 1 (best) BASIC31.95■■■□□ 2.71
Shroom4Q1W617 Lbx1-201ENSMUST00000099401 2484 ntAPPRIS P1 TSL 1 (best) BASIC31.95■■■□□ 2.71
Shroom4Q1W617 Gorasp2-201ENSMUST00000028509 2238 ntAPPRIS P2 TSL 1 (best) BASIC31.95■■■□□ 2.71
Shroom4Q1W617 Spr-202ENSMUST00000174286 775 ntTSL 2 BASIC31.95■■■□□ 2.7
Shroom4Q1W617 Gm44210-201ENSMUST00000205253 713 ntTSL 3 BASIC31.95■■■□□ 2.7
Shroom4Q1W617 Spint1-202ENSMUST00000110816 1913 ntAPPRIS P1 TSL 5 BASIC31.95■■■□□ 2.7
Shroom4Q1W617 Gm11762-201ENSMUST00000135630 1705 ntTSL 1 (best) BASIC31.95■■■□□ 2.7
Shroom4Q1W617 Syap1-201ENSMUST00000033723 2087 ntAPPRIS P1 TSL 1 (best) BASIC31.94■■■□□ 2.7
Shroom4Q1W617 Arl4d-201ENSMUST00000039388 1382 ntAPPRIS P1 TSL 1 (best) BASIC31.94■■■□□ 2.7
Shroom4Q1W617 Pus1-203ENSMUST00000086643 1868 ntAPPRIS P4 TSL 1 (best) BASIC31.94■■■□□ 2.7
Shroom4Q1W617 Rab34-209ENSMUST00000207728 567 ntTSL 2 BASIC31.94■■■□□ 2.7
Shroom4Q1W617 Fezf2-201ENSMUST00000022262 2188 ntAPPRIS P1 TSL 1 (best) BASIC31.93■■■□□ 2.7
Shroom4Q1W617 C230096K16Rik-201ENSMUST00000198074 1722 ntBASIC31.93■■■□□ 2.7
Shroom4Q1W617 E130307A14Rik-208ENSMUST00000145971 830 ntTSL 3 BASIC31.93■■■□□ 2.7
Shroom4Q1W617 Uncx-202ENSMUST00000174792 1196 ntTSL 1 (best) BASIC31.93■■■□□ 2.7
Shroom4Q1W617 Gon7-202ENSMUST00000179263 525 ntTSL 1 (best) BASIC31.93■■■□□ 2.7
Shroom4Q1W617 Rabac1-203ENSMUST00000205871 986 ntTSL 1 (best) BASIC31.93■■■□□ 2.7
Shroom4Q1W617 Cldn3-201ENSMUST00000094245 1259 ntAPPRIS P1 BASIC31.93■■■□□ 2.7
Shroom4Q1W617 Nkpd1-203ENSMUST00000214205 2309 ntAPPRIS ALT2 TSL 5 BASIC31.93■■■□□ 2.7
Shroom4Q1W617 Raph1-201ENSMUST00000027168 2241 ntAPPRIS ALT2 TSL 5 BASIC31.92■■■□□ 2.7
Shroom4Q1W617 March9-201ENSMUST00000040307 3037 ntAPPRIS P1 TSL 1 (best) BASIC31.92■■■□□ 2.7
Shroom4Q1W617 Olig3-201ENSMUST00000053225 2072 ntAPPRIS P1 BASIC31.92■■■□□ 2.7
Shroom4Q1W617 Atxn7l2-201ENSMUST00000102633 3044 ntAPPRIS P2 TSL 1 (best) BASIC31.92■■■□□ 2.7
Shroom4Q1W617 Map1lc3b-203ENSMUST00000181521 775 ntTSL 3 BASIC31.91■■■□□ 2.7
Shroom4Q1W617 Park7-201ENSMUST00000030805 908 ntAPPRIS P1 TSL 1 (best) BASIC31.91■■■□□ 2.7
Shroom4Q1W617 Spsb3-203ENSMUST00000117890 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC31.91■■■□□ 2.7
Shroom4Q1W617 Fam3c-203ENSMUST00000163963 1617 ntTSL 1 (best) BASIC31.91■■■□□ 2.7
Shroom4Q1W617 Gm20431-201ENSMUST00000125544 2367 ntAPPRIS P1 TSL 5 BASIC31.9■■■□□ 2.7
Shroom4Q1W617 Akr1a1-201ENSMUST00000030455 1420 ntAPPRIS P1 TSL 1 (best) BASIC31.9■■■□□ 2.7
Shroom4Q1W617 Tmem121-201ENSMUST00000058491 1574 ntAPPRIS P1 TSL 1 (best) BASIC31.9■■■□□ 2.7
Shroom4Q1W617 1810010K12Rik-201ENSMUST00000070378 1324 ntBASIC31.9■■■□□ 2.7
Shroom4Q1W617 Ypel3-204ENSMUST00000106359 469 ntTSL 5 BASIC31.9■■■□□ 2.7
Shroom4Q1W617 AV026068-208ENSMUST00000189098 286 ntTSL 5 BASIC31.9■■■□□ 2.7
Shroom4Q1W617 Has1-201ENSMUST00000003762 2090 ntAPPRIS P1 TSL 1 (best) BASIC31.89■■■□□ 2.7
Shroom4Q1W617 Gm21992-201ENSMUST00000172000 1434 ntAPPRIS P1 TSL 2 BASIC31.89■■■□□ 2.7
Shroom4Q1W617 Gm21992-206ENSMUST00000179909 1435 ntTSL 5 BASIC31.89■■■□□ 2.7
Shroom4Q1W617 Gnai2-203ENSMUST00000192837 421 ntTSL 5 BASIC31.89■■■□□ 2.7
Shroom4Q1W617 2810405F15Rik-201ENSMUST00000195368 932 ntBASIC31.89■■■□□ 2.7
Shroom4Q1W617 Cnp-201ENSMUST00000103120 2357 ntAPPRIS P1 TSL 1 (best) BASIC31.88■■■□□ 2.69
Shroom4Q1W617 Pusl1-201ENSMUST00000097737 1243 ntAPPRIS P1 TSL 5 BASIC31.88■■■□□ 2.69
Shroom4Q1W617 Fgfrl1-202ENSMUST00000112560 2318 ntTSL 1 (best) BASIC31.88■■■□□ 2.69
Shroom4Q1W617 Lypd3-201ENSMUST00000080718 1649 ntAPPRIS P1 TSL 1 (best) BASIC31.88■■■□□ 2.69
Shroom4Q1W617 Klc1-201ENSMUST00000084941 2504 ntAPPRIS P3 TSL 1 (best) BASIC31.88■■■□□ 2.69
Shroom4Q1W617 Eif1-201ENSMUST00000049385 1322 ntAPPRIS P1 TSL 1 (best) BASIC31.87■■■□□ 2.69
Shroom4Q1W617 Rhbdd3-201ENSMUST00000036320 1790 ntTSL 1 (best) BASIC31.87■■■□□ 2.69
Shroom4Q1W617 Tfam-203ENSMUST00000121685 899 ntAPPRIS ALT2 TSL 2 BASIC31.87■■■□□ 2.69
Shroom4Q1W617 Tecr-203ENSMUST00000165740 1120 ntTSL 1 (best) BASIC31.87■■■□□ 2.69
Shroom4Q1W617 Cacna2d1-207ENSMUST00000196750 1272 ntTSL 1 (best) BASIC31.87■■■□□ 2.69
Shroom4Q1W617 Ing1-201ENSMUST00000054399 2814 ntAPPRIS P1 TSL 1 (best) BASIC31.87■■■□□ 2.69
Shroom4Q1W617 Usp21-203ENSMUST00000111306 2185 ntAPPRIS ALT1 TSL 1 (best) BASIC31.86■■■□□ 2.69
Shroom4Q1W617 Tcp11-203ENSMUST00000114836 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC31.86■■■□□ 2.69
Shroom4Q1W617 Fdx1l-201ENSMUST00000010348 812 ntAPPRIS P1 TSL 1 (best) BASIC31.86■■■□□ 2.69
Shroom4Q1W617 Gm38205-201ENSMUST00000192243 258 ntBASIC31.86■■■□□ 2.69
Shroom4Q1W617 Nudt14-201ENSMUST00000002881 734 ntTSL 2 BASIC31.86■■■□□ 2.69
Shroom4Q1W617 Gng5-201ENSMUST00000090031 593 ntAPPRIS P1 TSL 1 (best) BASIC31.86■■■□□ 2.69
Shroom4Q1W617 Ntn5-201ENSMUST00000107742 1574 ntTSL 1 (best) BASIC31.86■■■□□ 2.69
Shroom4Q1W617 Impa2-201ENSMUST00000025403 1661 ntAPPRIS P1 TSL 1 (best) BASIC31.86■■■□□ 2.69
Shroom4Q1W617 Hlx-201ENSMUST00000048572 2278 ntAPPRIS P1 TSL 1 (best) BASIC31.86■■■□□ 2.69
Shroom4Q1W617 Reep6-207ENSMUST00000186864 2015 ntAPPRIS P3 TSL 1 (best) BASIC31.86■■■□□ 2.69
Shroom4Q1W617 Mcl1-202ENSMUST00000178686 858 ntAPPRIS ALT2 TSL 1 (best) BASIC31.85■■■□□ 2.69
Shroom4Q1W617 AC175538.2-202ENSMUST00000224997 1057 ntAPPRIS P1 BASIC31.85■■■□□ 2.69
Shroom4Q1W617 Vax2-201ENSMUST00000037807 1242 ntAPPRIS P1 TSL 1 (best) BASIC31.85■■■□□ 2.69
Shroom4Q1W617 Jmjd7-201ENSMUST00000044675 1373 ntAPPRIS P1 TSL 1 (best) BASIC31.85■■■□□ 2.69
Shroom4Q1W617 Lypla2-202ENSMUST00000105852 1588 ntAPPRIS P1 TSL 1 (best) BASIC31.85■■■□□ 2.69
Shroom4Q1W617 Cdx1-201ENSMUST00000025521 1750 ntAPPRIS P1 TSL 1 (best) BASIC31.85■■■□□ 2.69
Shroom4Q1W617 Gm43859-201ENSMUST00000200075 1412 ntBASIC31.85■■■□□ 2.69
Shroom4Q1W617 Sfr1-201ENSMUST00000099353 1583 ntAPPRIS P1 TSL 1 (best) BASIC31.85■■■□□ 2.69
Shroom4Q1W617 Rem2-202ENSMUST00000164766 1884 ntAPPRIS P1 TSL 1 (best) BASIC31.84■■■□□ 2.69
Shroom4Q1W617 Arl2bp-202ENSMUST00000109527 1133 ntTSL 1 (best) BASIC31.84■■■□□ 2.69
Shroom4Q1W617 Zfp637-201ENSMUST00000112858 650 ntTSL 2 BASIC31.84■■■□□ 2.69
Shroom4Q1W617 Zfp637-203ENSMUST00000112860 1231 ntTSL 1 (best) BASIC31.84■■■□□ 2.69
Shroom4Q1W617 Aktip-202ENSMUST00000120213 2200 ntAPPRIS P1 TSL 1 (best) BASIC31.84■■■□□ 2.69
Shroom4Q1W617 Atg3-201ENSMUST00000023343 2057 ntAPPRIS P1 TSL 1 (best) BASIC31.83■■■□□ 2.69
Shroom4Q1W617 Mgrn1-202ENSMUST00000070658 3290 ntAPPRIS P3 TSL 1 (best) BASIC31.83■■■□□ 2.69
Shroom4Q1W617 Zfp629-207ENSMUST00000134446 670 ntTSL 1 (best) BASIC31.83■■■□□ 2.69
Shroom4Q1W617 Cdc16-201ENSMUST00000043962 2301 ntAPPRIS P1 TSL 1 (best) BASIC31.83■■■□□ 2.69
Shroom4Q1W617 Gm26682-201ENSMUST00000180850 1729 ntTSL 1 (best) BASIC31.82■■■□□ 2.69
Shroom4Q1W617 Cacnb1-202ENSMUST00000092736 1880 ntTSL 1 (best) BASIC31.82■■■□□ 2.68
Shroom4Q1W617 Gm42911-201ENSMUST00000199360 1630 ntBASIC31.82■■■□□ 2.68
Shroom4Q1W617 Neurog1-201ENSMUST00000058475 1686 ntAPPRIS P1 BASIC31.82■■■□□ 2.68
Shroom4Q1W617 Fdxacb1-203ENSMUST00000176335 1817 ntTSL 1 (best) BASIC31.82■■■□□ 2.68
Shroom4Q1W617 Ung-201ENSMUST00000031587 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC31.82■■■□□ 2.68
Shroom4Q1W617 Gm12527-201ENSMUST00000117967 564 ntBASIC31.82■■■□□ 2.68
Shroom4Q1W617 Stoml2-201ENSMUST00000030169 1874 ntAPPRIS P1 TSL 1 (best) BASIC31.82■■■□□ 2.68
Shroom4Q1W617 Nat14-201ENSMUST00000047309 1612 ntAPPRIS P1 TSL 1 (best) BASIC31.82■■■□□ 2.68
Shroom4Q1W617 Vkorc1l1-201ENSMUST00000051758 3112 ntAPPRIS P1 TSL 1 (best) BASIC31.82■■■□□ 2.68
Shroom4Q1W617 Pitx3-201ENSMUST00000026259 1380 ntAPPRIS P1 TSL 1 (best) BASIC31.81■■■□□ 2.68
Retrieved 100 of 76,532 protein–RNA pairs in 24.6 ms