Protein–RNA interactions for Protein: P86448

Trim43b, Tripartite motif-containing protein 43B, mousemouse

Predictions only

Length 445 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim43bP86448 Ppp1cb-206ENSMUST00000202078 383 ntTSL 5 BASIC20.33■□□□□ 0.85
Trim43bP86448 Svbp-201ENSMUST00000030395 733 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Trim43bP86448 Ccdc50-201ENSMUST00000039443 2192 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
Trim43bP86448 Cd37-204ENSMUST00000209779 2541 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
Trim43bP86448 Aplp1-201ENSMUST00000006828 2343 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
Trim43bP86448 Ache-209ENSMUST00000196208 1911 ntTSL 5 BASIC20.33■□□□□ 0.84
Trim43bP86448 Map2k2-207ENSMUST00000143517 2405 ntAPPRIS P3 TSL 1 (best) BASIC20.33■□□□□ 0.84
Trim43bP86448 Dtnb-225ENSMUST00000174663 2381 ntAPPRIS ALT2 TSL 5 BASIC20.32■□□□□ 0.84
Trim43bP86448 Qrich1-206ENSMUST00000193258 2291 ntTSL 2 BASIC20.32■□□□□ 0.84
Trim43bP86448 Matn4-203ENSMUST00000109358 2056 ntTSL 5 BASIC20.32■□□□□ 0.84
Trim43bP86448 Gm12922-201ENSMUST00000120626 809 ntBASIC20.32■□□□□ 0.84
Trim43bP86448 Gm17324-201ENSMUST00000165499 922 ntAPPRIS P1 BASIC20.32■□□□□ 0.84
Trim43bP86448 Gm13241-201ENSMUST00000094493 780 ntBASIC20.32■□□□□ 0.84
Trim43bP86448 Anapc5-208ENSMUST00000197719 2383 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
Trim43bP86448 Cacnb1-205ENSMUST00000107562 1745 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
Trim43bP86448 Nrxn2-205ENSMUST00000113462 6667 ntAPPRIS P4 TSL 1 (best) BASIC20.32■□□□□ 0.84
Trim43bP86448 Snx5-202ENSMUST00000110030 2512 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Trim43bP86448 Gm29430-202ENSMUST00000191453 2015 ntTSL 5 BASIC20.31■□□□□ 0.84
Trim43bP86448 Sybu-208ENSMUST00000228057 3026 ntAPPRIS ALT2 BASIC20.31■□□□□ 0.84
Trim43bP86448 Bdh1-201ENSMUST00000089759 1711 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Trim43bP86448 Rela-201ENSMUST00000025867 2716 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Trim43bP86448 Endod1-203ENSMUST00000214236 419 ntAPPRIS ALT2 TSL 3 BASIC20.31■□□□□ 0.84
Trim43bP86448 Rasl11b-201ENSMUST00000051937 1812 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Trim43bP86448 Uchl5-206ENSMUST00000189936 1696 ntAPPRIS P3 TSL 1 (best) BASIC20.31■□□□□ 0.84
Trim43bP86448 Rnf8-201ENSMUST00000024817 2077 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Trim43bP86448 Adamts18-201ENSMUST00000093113 5642 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Trim43bP86448 Cep78-201ENSMUST00000047704 2548 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Trim43bP86448 Ahsa2-201ENSMUST00000020529 3023 ntAPPRIS P3 TSL 1 (best) BASIC20.3■□□□□ 0.84
Trim43bP86448 Cd83-201ENSMUST00000015540 2477 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Trim43bP86448 Lmbr1l-201ENSMUST00000023736 2300 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Trim43bP86448 Kcnn4-202ENSMUST00000205428 1945 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Trim43bP86448 Samd10-201ENSMUST00000060173 2164 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Trim43bP86448 Cep97-205ENSMUST00000121703 609 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
Trim43bP86448 Ostc-201ENSMUST00000043937 1067 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Trim43bP86448 March8-204ENSMUST00000123405 2102 ntTSL 5 BASIC20.3■□□□□ 0.84
Trim43bP86448 Htra2-201ENSMUST00000089645 1725 ntAPPRIS P2 TSL 1 (best) BASIC20.3■□□□□ 0.84
Trim43bP86448 Slc35a3-201ENSMUST00000029569 5725 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Trim43bP86448 Mgat4b-201ENSMUST00000041725 2429 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Trim43bP86448 Bmpr1a-201ENSMUST00000049005 5956 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Trim43bP86448 Lgr4-201ENSMUST00000046548 5060 ntAPPRIS P1 TSL 2 BASIC20.29■□□□□ 0.84
Trim43bP86448 Ssr2-201ENSMUST00000035785 1189 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Trim43bP86448 Atp6v1f-201ENSMUST00000004396 703 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Trim43bP86448 Gm9847-201ENSMUST00000052528 599 ntBASIC20.29■□□□□ 0.84
Trim43bP86448 Hcn2-201ENSMUST00000020581 3089 ntAPPRIS P1 TSL 5 BASIC20.29■□□□□ 0.84
Trim43bP86448 Bend7-204ENSMUST00000184139 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
Trim43bP86448 Six3os1-206ENSMUST00000175921 2737 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
Trim43bP86448 Srxn1-201ENSMUST00000041500 2812 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Trim43bP86448 Rhoa-201ENSMUST00000007959 2197 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Trim43bP86448 Lmtk3-201ENSMUST00000072580 4807 ntAPPRIS P2 TSL 1 (best) BASIC20.28■□□□□ 0.84
Trim43bP86448 Tesmin-204ENSMUST00000151341 2013 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
Trim43bP86448 Tal1-204ENSMUST00000162489 2894 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Trim43bP86448 0610010K14Rik-209ENSMUST00000108579 667 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
Trim43bP86448 Kras-202ENSMUST00000111710 1194 ntTSL 5 BASIC20.28■□□□□ 0.84
Trim43bP86448 Nsmf-213ENSMUST00000140737 862 ntTSL 5 BASIC20.28■□□□□ 0.84
Trim43bP86448 AC161180.2-201ENSMUST00000222567 1015 ntAPPRIS P1 BASIC20.28■□□□□ 0.84
Trim43bP86448 Kdm3b-201ENSMUST00000043775 6363 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Trim43bP86448 Smim19-202ENSMUST00000163774 1435 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
Trim43bP86448 Gtf2e2-202ENSMUST00000170705 1634 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Trim43bP86448 Epdr1-201ENSMUST00000002885 2363 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Trim43bP86448 Snrpb-201ENSMUST00000103199 1161 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Trim43bP86448 Hoxb7-201ENSMUST00000049352 1291 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Trim43bP86448 Tcte2-201ENSMUST00000053376 1105 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
Trim43bP86448 Xpa-202ENSMUST00000058232 1241 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
Trim43bP86448 Lrfn4-201ENSMUST00000053597 3194 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Trim43bP86448 Junb-201ENSMUST00000064922 1809 ntAPPRIS P1 BASIC20.27■□□□□ 0.84
Trim43bP86448 Xk-201ENSMUST00000015486 5076 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
Trim43bP86448 Rbm38-204ENSMUST00000173393 2071 ntAPPRIS P1 TSL 5 BASIC20.26■□□□□ 0.83
Trim43bP86448 1810010H24Rik-202ENSMUST00000140447 1677 ntAPPRIS ALT2 TSL 5 BASIC20.26■□□□□ 0.83
Trim43bP86448 Ralgps2-205ENSMUST00000185198 2229 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
Trim43bP86448 Pfdn4-204ENSMUST00000109148 736 ntTSL 3 BASIC20.26■□□□□ 0.83
Trim43bP86448 2900079G21Rik-201ENSMUST00000139552 1139 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
Trim43bP86448 Dynlt1f-201ENSMUST00000179554 807 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Trim43bP86448 Zfp346-202ENSMUST00000159147 1146 ntTSL 5 BASIC20.25■□□□□ 0.83
Trim43bP86448 Prkar1b-201ENSMUST00000026973 2637 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Trim43bP86448 Pou2f2-206ENSMUST00000108418 1934 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Trim43bP86448 Neto2-205ENSMUST00000216286 2932 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Trim43bP86448 Dhx33-204ENSMUST00000124464 1835 ntTSL 5 BASIC20.25■□□□□ 0.83
Trim43bP86448 Vmn1r17-205ENSMUST00000228342 2230 ntAPPRIS P2 BASIC20.25■□□□□ 0.83
Trim43bP86448 Fndc4-201ENSMUST00000041266 1375 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Trim43bP86448 Gm15039-201ENSMUST00000118914 875 ntBASIC20.24■□□□□ 0.83
Trim43bP86448 Pawr-202ENSMUST00000218332 870 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
Trim43bP86448 Polr1d-201ENSMUST00000050970 1196 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Trim43bP86448 Timmdc1-201ENSMUST00000002925 1573 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Trim43bP86448 E130311K13Rik-201ENSMUST00000061706 1640 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Trim43bP86448 Gm9780-202ENSMUST00000184915 1394 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Trim43bP86448 Klc1-204ENSMUST00000122300 2268 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
Trim43bP86448 Suz12-201ENSMUST00000017692 4373 ntAPPRIS P3 TSL 1 (best) BASIC20.23■□□□□ 0.83
Trim43bP86448 Gpn2-202ENSMUST00000105899 996 ntTSL 5 BASIC20.23■□□□□ 0.83
Trim43bP86448 Gm20532-201ENSMUST00000174066 780 ntAPPRIS P1 TSL 5 BASIC20.23■□□□□ 0.83
Trim43bP86448 Wrap73-201ENSMUST00000030895 1598 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Trim43bP86448 Ccdc74a-201ENSMUST00000056962 1273 ntAPPRIS P1 TSL 5 BASIC20.23■□□□□ 0.83
Trim43bP86448 Hnrnpl-211ENSMUST00000174548 2679 ntAPPRIS P1 TSL 5 BASIC20.23■□□□□ 0.83
Trim43bP86448 Gga2-201ENSMUST00000033160 4915 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Trim43bP86448 Nkx2-3-201ENSMUST00000057178 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Trim43bP86448 Hpdl-201ENSMUST00000055436 1804 ntAPPRIS P1 BASIC20.23■□□□□ 0.83
Trim43bP86448 Nectin1-201ENSMUST00000034510 5653 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Trim43bP86448 Camk2b-201ENSMUST00000002817 1872 ntTSL 5 BASIC20.22■□□□□ 0.83
Trim43bP86448 Ntn5-202ENSMUST00000182750 1758 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Trim43bP86448 Hoxc11-201ENSMUST00000001701 2021 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Trim43bP86448 Dus1l-203ENSMUST00000106135 1863 ntAPPRIS ALT2 TSL 5 BASIC20.22■□□□□ 0.83
Retrieved 100 of 76,532 protein–RNA pairs in 29.7 ms