Protein–RNA interactions for Protein: P53783

Sox1, Transcription factor SOX-1, mousemouse

Predictions only

Length 391 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox1P53783 Nisch-222ENSMUST00000172142 2780 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
Sox1P53783 Rab3il1-202ENSMUST00000117641 2004 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
Sox1P53783 Hoxc12-201ENSMUST00000055562 1031 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Sox1P53783 2410004B18Rik-201ENSMUST00000039571 1547 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Sox1P53783 Junb-201ENSMUST00000064922 1809 ntAPPRIS P1 BASIC20.46■□□□□ 0.87
Sox1P53783 Olfm1-201ENSMUST00000028177 2757 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Sox1P53783 D030056L22Rik-201ENSMUST00000055792 1631 ntAPPRIS P2 TSL 1 (best) BASIC20.45■□□□□ 0.87
Sox1P53783 4930519A11Rik-201ENSMUST00000181381 1523 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
Sox1P53783 Ptbp3-204ENSMUST00000140925 606 ntTSL 3 BASIC20.45■□□□□ 0.86
Sox1P53783 Gm6420-201ENSMUST00000193885 723 ntBASIC20.45■□□□□ 0.86
Sox1P53783 Tinagl1-209ENSMUST00000175992 1847 ntAPPRIS ALT2 TSL 5 BASIC20.45■□□□□ 0.86
Sox1P53783 Mettl9-201ENSMUST00000033163 1823 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Sox1P53783 Rfxap-201ENSMUST00000044373 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
Sox1P53783 Artn-201ENSMUST00000070816 2177 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Sox1P53783 E130309D02Rik-201ENSMUST00000046418 2208 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Sox1P53783 Ndrg2-202ENSMUST00000111632 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Sox1P53783 Deaf1-201ENSMUST00000080553 2135 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Sox1P53783 2610528J11Rik-202ENSMUST00000106367 736 ntAPPRIS P1 TSL 2 BASIC20.44■□□□□ 0.86
Sox1P53783 Spata3-208ENSMUST00000149469 1110 ntTSL 5 BASIC20.44■□□□□ 0.86
Sox1P53783 Insig2-203ENSMUST00000159085 1252 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Sox1P53783 AC122465.1-201ENSMUST00000220813 1209 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
Sox1P53783 Xpa-201ENSMUST00000030013 955 ntAPPRIS P2 TSL 1 (best) BASIC20.44■□□□□ 0.86
Sox1P53783 Gm8909-202ENSMUST00000097335 1182 ntAPPRIS ALT2 TSL 5 BASIC20.44■□□□□ 0.86
Sox1P53783 Gm10638-201ENSMUST00000098532 905 ntAPPRIS P1 BASIC20.44■□□□□ 0.86
Sox1P53783 Foxd2-201ENSMUST00000068654 2592 ntAPPRIS P1 BASIC20.44■□□□□ 0.86
Sox1P53783 Derl3-201ENSMUST00000009236 1321 ntAPPRIS P2 TSL 1 (best) BASIC20.44■□□□□ 0.86
Sox1P53783 Evl-202ENSMUST00000077735 2121 ntAPPRIS P3 TSL 1 (best) BASIC20.44■□□□□ 0.86
Sox1P53783 H2-Q7-201ENSMUST00000071951 1406 ntAPPRIS P2 TSL 1 (best) BASIC20.44■□□□□ 0.86
Sox1P53783 Gpr137-202ENSMUST00000099774 1434 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
Sox1P53783 Ltk-205ENSMUST00000140224 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
Sox1P53783 Hoxb3-202ENSMUST00000093944 3190 ntAPPRIS P1 TSL 5 BASIC20.43■□□□□ 0.86
Sox1P53783 Sorcs2-202ENSMUST00000070720 2089 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
Sox1P53783 Pgap3-205ENSMUST00000128897 1264 ntTSL 5 BASIC20.43■□□□□ 0.86
Sox1P53783 Alcam-206ENSMUST00000168071 878 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
Sox1P53783 Gm572-201ENSMUST00000105698 1385 ntAPPRIS P1 TSL 5 BASIC20.43■□□□□ 0.86
Sox1P53783 Tex264-203ENSMUST00000169068 1364 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Sox1P53783 Arl4d-201ENSMUST00000039388 1382 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Sox1P53783 Idnk-202ENSMUST00000109868 1462 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
Sox1P53783 Hpca-204ENSMUST00000116444 1847 ntAPPRIS P1 TSL 5 BASIC20.42■□□□□ 0.86
Sox1P53783 1110004F10Rik-202ENSMUST00000106607 1153 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
Sox1P53783 Dleu2-210ENSMUST00000183054 722 ntTSL 5 BASIC20.42■□□□□ 0.86
Sox1P53783 Gnai2-203ENSMUST00000192837 421 ntTSL 5 BASIC20.42■□□□□ 0.86
Sox1P53783 Bcl7c-205ENSMUST00000205977 891 ntTSL 2 BASIC20.42■□□□□ 0.86
Sox1P53783 Aga-203ENSMUST00000211424 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
Sox1P53783 Tomm20-202ENSMUST00000212771 458 ntTSL 2 BASIC20.42■□□□□ 0.86
Sox1P53783 AC121577.1-201ENSMUST00000227302 707 ntBASIC20.42■□□□□ 0.86
Sox1P53783 Grin2d-203ENSMUST00000211713 5244 ntAPPRIS P1 TSL 5 BASIC20.42■□□□□ 0.86
Sox1P53783 Ier5l-201ENSMUST00000065134 2683 ntAPPRIS P1 BASIC20.42■□□□□ 0.86
Sox1P53783 Rgs19-202ENSMUST00000108769 1460 ntTSL 2 BASIC20.42■□□□□ 0.86
Sox1P53783 Arx-202ENSMUST00000113947 2454 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Sox1P53783 C230096K16Rik-201ENSMUST00000198074 1722 ntBASIC20.41■□□□□ 0.86
Sox1P53783 Mta3-204ENSMUST00000112352 2674 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
Sox1P53783 Foxn3-209ENSMUST00000177451 2882 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Sox1P53783 Zfp639-202ENSMUST00000191783 1988 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Sox1P53783 Ube2g2-204ENSMUST00000174510 2031 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Sox1P53783 Ccdc142-201ENSMUST00000101254 2317 ntAPPRIS P1 TSL 5 BASIC20.41■□□□□ 0.86
Sox1P53783 Yy1-201ENSMUST00000021692 6178 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Sox1P53783 Etv2-201ENSMUST00000108147 1048 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Sox1P53783 Gmcl1-202ENSMUST00000113679 960 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
Sox1P53783 Dohh-206ENSMUST00000131968 672 ntAPPRIS P1 TSL 3 BASIC20.41■□□□□ 0.86
Sox1P53783 a-201ENSMUST00000029123 731 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Sox1P53783 Smurf2-202ENSMUST00000103067 5290 ntTSL 5 BASIC20.41■□□□□ 0.86
Sox1P53783 Klhl25-203ENSMUST00000205612 1343 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
Sox1P53783 Gm16759-201ENSMUST00000126238 1393 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
Sox1P53783 Cavin3-201ENSMUST00000047040 1662 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Sox1P53783 Zcchc2-202ENSMUST00000119166 6368 ntAPPRIS ALT2 TSL 1 (best) BASIC20.4■□□□□ 0.86
Sox1P53783 Gm15155-201ENSMUST00000112542 1009 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Sox1P53783 Kansl1l-202ENSMUST00000113987 2342 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
Sox1P53783 Fezf2-201ENSMUST00000022262 2188 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Sox1P53783 Gm9987-201ENSMUST00000069768 567 ntBASIC20.4■□□□□ 0.86
Sox1P53783 Cdkn2c-202ENSMUST00000097921 2471 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
Sox1P53783 2410022M11Rik-201ENSMUST00000186474 1911 ntBASIC20.39■□□□□ 0.86
Sox1P53783 Hoxc8-201ENSMUST00000001703 1868 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
Sox1P53783 Gm13146-201ENSMUST00000118508 780 ntBASIC20.39■□□□□ 0.85
Sox1P53783 Gm16998-201ENSMUST00000181899 1230 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
Sox1P53783 Ccnd2-202ENSMUST00000201066 983 ntTSL 2 BASIC20.39■□□□□ 0.85
Sox1P53783 Rpl38-202ENSMUST00000082092 345 ntAPPRIS P1 TSL 2 BASIC20.39■□□□□ 0.85
Sox1P53783 Efna3-201ENSMUST00000029673 2363 ntAPPRIS P2 TSL 1 (best) BASIC20.39■□□□□ 0.85
Sox1P53783 Impa2-201ENSMUST00000025403 1661 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Sox1P53783 Dusp7-201ENSMUST00000172306 3213 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Sox1P53783 Git2-214ENSMUST00000155908 2338 ntTSL 5 BASIC20.38■□□□□ 0.85
Sox1P53783 Gm11613-201ENSMUST00000134427 1971 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
Sox1P53783 Osbpl10-207ENSMUST00000183104 2477 ntAPPRIS P1 TSL 5 BASIC20.38■□□□□ 0.85
Sox1P53783 9230116N13Rik-201ENSMUST00000181746 2097 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
Sox1P53783 Prmt1-202ENSMUST00000107843 1508 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
Sox1P53783 Cadps-204ENSMUST00000177814 5461 ntAPPRIS ALT2 TSL 5 BASIC20.37■□□□□ 0.85
Sox1P53783 Tmpo-204ENSMUST00000099355 1953 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
Sox1P53783 Ankrd9-201ENSMUST00000043459 1706 ntAPPRIS P2 TSL 1 (best) BASIC20.37■□□□□ 0.85
Sox1P53783 Arrdc4-202ENSMUST00000118110 1129 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
Sox1P53783 2210408F21Rik-208ENSMUST00000144612 450 ntTSL 3 BASIC20.37■□□□□ 0.85
Sox1P53783 A730015C16Rik-201ENSMUST00000164855 1221 ntAPPRIS P1 BASIC20.37■□□□□ 0.85
Sox1P53783 Rps16-201ENSMUST00000082134 1109 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Sox1P53783 Tax1bp3-201ENSMUST00000040687 1523 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Sox1P53783 Shb-201ENSMUST00000061986 2244 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Sox1P53783 Kctd15-202ENSMUST00000108069 2407 ntAPPRIS P1 TSL 5 BASIC20.36■□□□□ 0.85
Sox1P53783 Csrp2-201ENSMUST00000020403 1384 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Sox1P53783 Tbx3os2-201ENSMUST00000135385 1345 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
Sox1P53783 a-202ENSMUST00000109697 705 ntAPPRIS P1 TSL 5 BASIC20.36■□□□□ 0.85
Sox1P53783 Ube2i-213ENSMUST00000174031 824 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Sox1P53783 Cpne1-217ENSMUST00000184265 871 ntTSL 5 BASIC20.36■□□□□ 0.85
Retrieved 100 of 76,532 protein–RNA pairs in 18 ms