Protein–RNA interactions for Protein: P53564

Cux1, Homeobox protein cut-like 1, mousemouse

Predictions only

Length 1,515 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cux1P53564 Gm13146-201ENSMUST00000118508 780 ntBASIC31.06■■■□□ 2.56
Cux1P53564 A730056A06Rik-202ENSMUST00000206959 526 ntTSL 3 BASIC31.06■■■□□ 2.56
Cux1P53564 Gm7514-201ENSMUST00000209475 934 ntBASIC31.06■■■□□ 2.56
Cux1P53564 Gm10306-201ENSMUST00000094969 533 ntAPPRIS P1 BASIC31.06■■■□□ 2.56
Cux1P53564 Ick-201ENSMUST00000009972 873 ntTSL 1 (best) BASIC31.06■■■□□ 2.56
Cux1P53564 Ccdc84-201ENSMUST00000053286 1725 ntAPPRIS P1 TSL 1 (best) BASIC31.06■■■□□ 2.56
Cux1P53564 Mindy2-202ENSMUST00000213380 2521 ntAPPRIS ALT2 TSL 1 (best) BASIC31.06■■■□□ 2.56
Cux1P53564 Cpsf4-202ENSMUST00000160422 1756 ntAPPRIS ALT1 TSL 5 BASIC31.05■■■□□ 2.56
Cux1P53564 Pcyt2-203ENSMUST00000106188 1486 ntAPPRIS ALT2 TSL 1 (best) BASIC31.05■■■□□ 2.56
Cux1P53564 Snrpd3-203ENSMUST00000220229 442 ntTSL 3 BASIC31.05■■■□□ 2.56
Cux1P53564 Psmb5-201ENSMUST00000022803 899 ntAPPRIS P1 TSL 1 (best) BASIC31.05■■■□□ 2.56
Cux1P53564 Mgll-205ENSMUST00000150180 1312 ntTSL 1 (best) BASIC31.05■■■□□ 2.56
Cux1P53564 Syap1-201ENSMUST00000033723 2087 ntAPPRIS P1 TSL 1 (best) BASIC31.04■■■□□ 2.56
Cux1P53564 Gpn2-201ENSMUST00000030661 1367 ntAPPRIS P1 TSL 1 (best) BASIC31.04■■■□□ 2.56
Cux1P53564 Gm11762-201ENSMUST00000135630 1705 ntTSL 1 (best) BASIC31.04■■■□□ 2.56
Cux1P53564 Gm10653-202ENSMUST00000139570 835 ntBASIC31.03■■■□□ 2.56
Cux1P53564 Gm45015-201ENSMUST00000207943 1364 ntAPPRIS P1 TSL 5 BASIC31.03■■■□□ 2.56
Cux1P53564 Spint1-202ENSMUST00000110816 1913 ntAPPRIS P1 TSL 5 BASIC31.03■■■□□ 2.56
Cux1P53564 Snrpc-201ENSMUST00000071006 870 ntAPPRIS P1 TSL 1 (best) BASIC31.03■■■□□ 2.56
Cux1P53564 Mfap2-201ENSMUST00000071977 1073 ntAPPRIS P1 TSL 1 (best) BASIC31.03■■■□□ 2.56
Cux1P53564 Arhgap8-201ENSMUST00000006029 1527 ntAPPRIS P1 TSL 5 BASIC31.02■■■□□ 2.56
Cux1P53564 Cebpa-202ENSMUST00000205391 2161 ntTSL 5 BASIC31.02■■■□□ 2.56
Cux1P53564 Rhbdd3-201ENSMUST00000036320 1790 ntTSL 1 (best) BASIC31.02■■■□□ 2.56
Cux1P53564 Gm13148-201ENSMUST00000118892 745 ntBASIC31.02■■■□□ 2.56
Cux1P53564 Smkr-ps-202ENSMUST00000141679 901 ntTSL 1 (best) BASIC31.02■■■□□ 2.56
Cux1P53564 Klhl25-203ENSMUST00000205612 1343 ntTSL 1 (best) BASIC31.01■■■□□ 2.56
Cux1P53564 Atg3-201ENSMUST00000023343 2057 ntAPPRIS P1 TSL 1 (best) BASIC31.01■■■□□ 2.56
Cux1P53564 Pus1-203ENSMUST00000086643 1868 ntAPPRIS P4 TSL 1 (best) BASIC31.01■■■□□ 2.56
Cux1P53564 Fah-201ENSMUST00000032865 1585 ntAPPRIS P1 TSL 1 (best) BASIC31.01■■■□□ 2.56
Cux1P53564 Klf15-201ENSMUST00000032174 2373 ntAPPRIS P1 TSL 1 (best) BASIC31.01■■■□□ 2.55
Cux1P53564 3110082J24Rik-201ENSMUST00000127749 327 ntAPPRIS P1 TSL 5 BASIC31.01■■■□□ 2.55
Cux1P53564 Cdx1-201ENSMUST00000025521 1750 ntAPPRIS P1 TSL 1 (best) BASIC31.01■■■□□ 2.55
Cux1P53564 Akt1-201ENSMUST00000001780 2690 ntAPPRIS P1 TSL 1 (best) BASIC31■■■□□ 2.55
Cux1P53564 Gm21992-201ENSMUST00000172000 1434 ntAPPRIS P1 TSL 2 BASIC31■■■□□ 2.55
Cux1P53564 Gm21992-206ENSMUST00000179909 1435 ntTSL 5 BASIC31■■■□□ 2.55
Cux1P53564 Fezf2-201ENSMUST00000022262 2188 ntAPPRIS P1 TSL 1 (best) BASIC31■■■□□ 2.55
Cux1P53564 Whrn-204ENSMUST00000095037 2419 ntTSL 1 (best) BASIC31■■■□□ 2.55
Cux1P53564 Gas2l1-202ENSMUST00000056649 2847 ntAPPRIS P3 TSL 5 BASIC30.99■■■□□ 2.55
Cux1P53564 Cetn3-201ENSMUST00000022009 1226 ntAPPRIS P1 TSL 1 (best) BASIC30.99■■■□□ 2.55
Cux1P53564 Spsb3-203ENSMUST00000117890 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC30.99■■■□□ 2.55
Cux1P53564 Cep78-201ENSMUST00000047704 2548 ntAPPRIS P1 TSL 1 (best) BASIC30.99■■■□□ 2.55
Cux1P53564 Polr2c-201ENSMUST00000109521 1580 ntAPPRIS P1 TSL 1 (best) BASIC30.98■■■□□ 2.55
Cux1P53564 Reep6-207ENSMUST00000186864 2015 ntAPPRIS P3 TSL 1 (best) BASIC30.98■■■□□ 2.55
Cux1P53564 Gm39115-201ENSMUST00000211350 699 ntAPPRIS P1 BASIC30.98■■■□□ 2.55
Cux1P53564 Med30-201ENSMUST00000037115 1007 ntAPPRIS P1 TSL 1 (best) BASIC30.98■■■□□ 2.55
Cux1P53564 Aktip-202ENSMUST00000120213 2200 ntAPPRIS P1 TSL 1 (best) BASIC30.98■■■□□ 2.55
Cux1P53564 Snap91-203ENSMUST00000074501 2577 ntAPPRIS ALT2 TSL 1 (best) BASIC30.98■■■□□ 2.55
Cux1P53564 Gpr160-202ENSMUST00000108258 2139 ntAPPRIS P1 TSL 1 (best) BASIC30.98■■■□□ 2.55
Cux1P53564 Il23a-201ENSMUST00000026449 1360 ntAPPRIS P1 TSL 1 (best) BASIC30.98■■■□□ 2.55
Cux1P53564 Tomm6-201ENSMUST00000113301 594 ntAPPRIS P1 TSL 2 BASIC30.98■■■□□ 2.55
Cux1P53564 Nxph4-201ENSMUST00000095266 1675 ntAPPRIS P1 TSL 1 (best) BASIC30.97■■■□□ 2.55
Cux1P53564 Rab34-209ENSMUST00000207728 567 ntTSL 2 BASIC30.97■■■□□ 2.55
Cux1P53564 Rtl8b-201ENSMUST00000088778 1232 ntAPPRIS P1 BASIC30.97■■■□□ 2.55
Cux1P53564 Sdsl-201ENSMUST00000031594 1476 ntAPPRIS P1 TSL 1 (best) BASIC30.97■■■□□ 2.55
Cux1P53564 Meg3-207ENSMUST00000143836 1896 ntTSL 1 (best) BASIC30.97■■■□□ 2.55
Cux1P53564 C230096K16Rik-201ENSMUST00000198074 1722 ntBASIC30.97■■■□□ 2.55
Cux1P53564 Hoxb6-201ENSMUST00000000704 1321 ntAPPRIS P1 TSL 1 (best) BASIC30.97■■■□□ 2.55
Cux1P53564 1700003N22Rik-201ENSMUST00000194834 808 ntBASIC30.96■■■□□ 2.55
Cux1P53564 Akr1a1-201ENSMUST00000030455 1420 ntAPPRIS P1 TSL 1 (best) BASIC30.95■■■□□ 2.54
Cux1P53564 Stoml2-201ENSMUST00000030169 1874 ntAPPRIS P1 TSL 1 (best) BASIC30.94■■■□□ 2.54
Cux1P53564 Gm12441-201ENSMUST00000121806 588 ntBASIC30.94■■■□□ 2.54
Cux1P53564 Vgll2-201ENSMUST00000058347 966 ntAPPRIS ALT2 TSL 1 (best) BASIC30.94■■■□□ 2.54
Cux1P53564 Tcp11-203ENSMUST00000114836 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC30.94■■■□□ 2.54
Cux1P53564 Msantd1-203ENSMUST00000202205 744 ntTSL 2 BASIC30.93■■■□□ 2.54
Cux1P53564 Park7-201ENSMUST00000030805 908 ntAPPRIS P1 TSL 1 (best) BASIC30.93■■■□□ 2.54
Cux1P53564 Gm4968-201ENSMUST00000071458 858 ntBASIC30.93■■■□□ 2.54
Cux1P53564 Fam3c-203ENSMUST00000163963 1617 ntTSL 1 (best) BASIC30.93■■■□□ 2.54
Cux1P53564 Gm44210-201ENSMUST00000205253 713 ntTSL 3 BASIC30.93■■■□□ 2.54
Cux1P53564 Slc35b2-201ENSMUST00000041353 2326 ntTSL 1 (best) BASIC30.92■■■□□ 2.54
Cux1P53564 Baiap2-201ENSMUST00000026436 2394 ntAPPRIS P4 TSL 1 (best) BASIC30.92■■■□□ 2.54
Cux1P53564 Acot8-202ENSMUST00000103094 1152 ntAPPRIS P1 TSL 1 (best) BASIC30.92■■■□□ 2.54
Cux1P53564 Gm12660-201ENSMUST00000123764 664 ntTSL 3 BASIC30.92■■■□□ 2.54
Cux1P53564 Nespas-201ENSMUST00000143738 1083 ntBASIC30.92■■■□□ 2.54
Cux1P53564 Spr-202ENSMUST00000174286 775 ntTSL 2 BASIC30.92■■■□□ 2.54
Cux1P53564 Acot8-201ENSMUST00000017451 1055 ntTSL 1 (best) BASIC30.92■■■□□ 2.54
Cux1P53564 Rem2-202ENSMUST00000164766 1884 ntAPPRIS P1 TSL 1 (best) BASIC30.92■■■□□ 2.54
Cux1P53564 Ltk-206ENSMUST00000182203 2232 ntAPPRIS ALT2 TSL 1 (best) BASIC30.92■■■□□ 2.54
Cux1P53564 Pim3-201ENSMUST00000042818 2419 ntAPPRIS P1 TSL 1 (best) BASIC30.92■■■□□ 2.54
Cux1P53564 Impa2-201ENSMUST00000025403 1661 ntAPPRIS P1 TSL 1 (best) BASIC30.91■■■□□ 2.54
Cux1P53564 Arl4d-201ENSMUST00000039388 1382 ntAPPRIS P1 TSL 1 (best) BASIC30.91■■■□□ 2.54
Cux1P53564 Mir5133-201ENSMUST00000174955 77 ntBASIC30.91■■■□□ 2.54
Cux1P53564 Gm38205-201ENSMUST00000192243 258 ntBASIC30.91■■■□□ 2.54
Cux1P53564 Cldn3-201ENSMUST00000094245 1259 ntAPPRIS P1 BASIC30.91■■■□□ 2.54
Cux1P53564 Gm32051-202ENSMUST00000197905 2385 ntBASIC30.91■■■□□ 2.54
Cux1P53564 Spock1-204ENSMUST00000186271 2005 ntAPPRIS P3 TSL 1 (best) BASIC30.91■■■□□ 2.54
Cux1P53564 Ung-201ENSMUST00000031587 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC30.91■■■□□ 2.54
Cux1P53564 Gm43859-201ENSMUST00000200075 1412 ntBASIC30.9■■■□□ 2.54
Cux1P53564 Gon7-202ENSMUST00000179263 525 ntTSL 1 (best) BASIC30.9■■■□□ 2.54
Cux1P53564 Rabac1-203ENSMUST00000205871 986 ntTSL 1 (best) BASIC30.9■■■□□ 2.54
Cux1P53564 Nudt14-201ENSMUST00000002881 734 ntTSL 2 BASIC30.9■■■□□ 2.54
Cux1P53564 Slc35b3-209ENSMUST00000225432 2216 ntAPPRIS P3 BASIC30.9■■■□□ 2.54
Cux1P53564 Lypla2-202ENSMUST00000105852 1588 ntAPPRIS P1 TSL 1 (best) BASIC30.9■■■□□ 2.54
Cux1P53564 Uncx-202ENSMUST00000174792 1196 ntTSL 1 (best) BASIC30.89■■■□□ 2.54
Cux1P53564 Fdxacb1-203ENSMUST00000176335 1817 ntTSL 1 (best) BASIC30.89■■■□□ 2.54
Cux1P53564 Adssl1-202ENSMUST00000180015 1819 ntTSL 1 (best) BASIC30.89■■■□□ 2.54
Cux1P53564 1810010K12Rik-201ENSMUST00000070378 1324 ntBASIC30.89■■■□□ 2.53
Cux1P53564 Retreg2-208ENSMUST00000190240 2438 ntAPPRIS ALT2 TSL 1 (best) BASIC30.89■■■□□ 2.53
Cux1P53564 Tmem121-201ENSMUST00000058491 1574 ntAPPRIS P1 TSL 1 (best) BASIC30.88■■■□□ 2.53
Cux1P53564 Gm26682-201ENSMUST00000180850 1729 ntTSL 1 (best) BASIC30.88■■■□□ 2.53
Cux1P53564 Gm42911-201ENSMUST00000199360 1630 ntBASIC30.88■■■□□ 2.53
Retrieved 100 of 76,532 protein–RNA pairs in 21.9 ms