Protein–RNA interactions for Protein: O55017

Cacna1b, Voltage-dependent N-type calcium channel subunit alpha-1B, mousemouse

Predictions only

Length 2,327 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cacna1bO55017 Rpl13-ps6-201ENSMUST00000079761 636 ntBASIC19.22■□□□□ 0.67
Cacna1bO55017 Rpl13-ps3-201ENSMUST00000079960 624 ntBASIC19.22■□□□□ 0.67
Cacna1bO55017 Rbmxl1-202ENSMUST00000211719 1622 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Cacna1bO55017 Fam168b-203ENSMUST00000167518 5058 ntTSL 5 BASIC19.22■□□□□ 0.67
Cacna1bO55017 Rnf149-201ENSMUST00000062525 2492 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Cacna1bO55017 Gm42418-201ENSMUST00000182010 1831 ntBASIC19.22■□□□□ 0.67
Cacna1bO55017 Pth1r-201ENSMUST00000006005 2307 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Cacna1bO55017 Npm3-ps1-201ENSMUST00000119728 528 ntBASIC19.22■□□□□ 0.67
Cacna1bO55017 Npm3-201ENSMUST00000070215 888 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Cacna1bO55017 P4ha3-201ENSMUST00000057023 2361 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Cacna1bO55017 Htatip2-202ENSMUST00000207895 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
Cacna1bO55017 Gse1-203ENSMUST00000120493 4610 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
Cacna1bO55017 Ergic1-206ENSMUST00000167662 2754 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Cacna1bO55017 Stac3-201ENSMUST00000035839 1790 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Cacna1bO55017 Rab28-203ENSMUST00000201422 1697 ntTSL 5 BASIC19.21■□□□□ 0.67
Cacna1bO55017 Uncx-202ENSMUST00000174792 1196 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Cacna1bO55017 1700101I19Rik-202ENSMUST00000186712 510 ntBASIC19.21■□□□□ 0.67
Cacna1bO55017 Ccsap-201ENSMUST00000034452 2390 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Cacna1bO55017 Mypop-201ENSMUST00000059331 2173 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
Cacna1bO55017 Ankrd9-201ENSMUST00000043459 1706 ntAPPRIS P2 TSL 1 (best) BASIC19.2■□□□□ 0.66
Cacna1bO55017 Morf4l1-201ENSMUST00000085248 1882 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Cacna1bO55017 Purg-202ENSMUST00000078058 1795 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Cacna1bO55017 Cetn3-201ENSMUST00000022009 1226 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Cacna1bO55017 Gng5-201ENSMUST00000090031 593 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Cacna1bO55017 Fbxo24-201ENSMUST00000031732 2161 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Cacna1bO55017 Klhl25-203ENSMUST00000205612 1343 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Cacna1bO55017 Kat2b-201ENSMUST00000000724 4653 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Cacna1bO55017 Hoxa11os-201ENSMUST00000134512 1839 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Cacna1bO55017 Arl6ip4-202ENSMUST00000122394 982 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
Cacna1bO55017 Tecr-203ENSMUST00000165740 1120 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Cacna1bO55017 1700067K01Rik-203ENSMUST00000172548 986 ntAPPRIS P2 TSL 1 (best) BASIC19.19■□□□□ 0.66
Cacna1bO55017 Rab34-209ENSMUST00000207728 567 ntTSL 2 BASIC19.19■□□□□ 0.66
Cacna1bO55017 1700067K01Rik-201ENSMUST00000060357 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
Cacna1bO55017 Dedd-203ENSMUST00000111299 2322 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Cacna1bO55017 Nfkbid-203ENSMUST00000108176 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
Cacna1bO55017 Gm43859-201ENSMUST00000200075 1412 ntBASIC19.19■□□□□ 0.66
Cacna1bO55017 Rab7-206ENSMUST00000203674 424 ntTSL 5 BASIC19.19■□□□□ 0.66
Cacna1bO55017 Begain-203ENSMUST00000190647 2707 ntAPPRIS P2 TSL 1 (best) BASIC19.19■□□□□ 0.66
Cacna1bO55017 Lbp-202ENSMUST00000109491 1322 ntTSL 2 BASIC19.19■□□□□ 0.66
Cacna1bO55017 Arrdc2-201ENSMUST00000002989 2355 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Cacna1bO55017 Art5-204ENSMUST00000106937 1713 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Cacna1bO55017 Gm2990-201ENSMUST00000180662 1118 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Cacna1bO55017 Crim1-201ENSMUST00000112498 5995 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Cacna1bO55017 Tlk2-202ENSMUST00000092537 2743 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Cacna1bO55017 Gon7-202ENSMUST00000179263 525 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Cacna1bO55017 Gm6365-201ENSMUST00000054711 744 ntBASIC19.18■□□□□ 0.66
Cacna1bO55017 St6galnac6-203ENSMUST00000095044 2394 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
Cacna1bO55017 Cox7c-202ENSMUST00000078764 433 ntTSL 2 BASIC19.17■□□□□ 0.66
Cacna1bO55017 Trim3-203ENSMUST00000106791 2466 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Cacna1bO55017 Nsun2-208ENSMUST00000176485 2408 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
Cacna1bO55017 Stxbp3-202ENSMUST00000106596 553 ntTSL 2 BASIC19.17■□□□□ 0.66
Cacna1bO55017 Mrps10-203ENSMUST00000119945 1018 ntAPPRIS P4 TSL 1 (best) BASIC19.17■□□□□ 0.66
Cacna1bO55017 AC158538.1-201ENSMUST00000225870 294 ntBASIC19.17■□□□□ 0.66
Cacna1bO55017 Cldn3-201ENSMUST00000094245 1259 ntAPPRIS P1 BASIC19.17■□□□□ 0.66
Cacna1bO55017 Phactr2-202ENSMUST00000105543 2735 ntAPPRIS P2 TSL 1 (best) BASIC19.16■□□□□ 0.66
Cacna1bO55017 Rhoq-201ENSMUST00000024956 4151 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Cacna1bO55017 Coro1a-209ENSMUST00000173108 1170 ntTSL 5 BASIC19.16■□□□□ 0.66
Cacna1bO55017 Cldn5-201ENSMUST00000043577 1414 ntAPPRIS P1 BASIC19.16■□□□□ 0.66
Cacna1bO55017 Tbxa2r-201ENSMUST00000105325 1765 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Cacna1bO55017 Hpca-204ENSMUST00000116444 1847 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
Cacna1bO55017 Ezh2-203ENSMUST00000114616 2670 ntAPPRIS ALT1 TSL 5 BASIC19.16■□□□□ 0.66
Cacna1bO55017 1700123O20Rik-201ENSMUST00000038539 1843 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Cacna1bO55017 Cacnb1-205ENSMUST00000107562 1745 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Cacna1bO55017 Gm3807-201ENSMUST00000193520 1168 ntBASIC19.16■□□□□ 0.66
Cacna1bO55017 Tmem239-201ENSMUST00000055421 1291 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Cacna1bO55017 Apcdd1-201ENSMUST00000096554 2799 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Cacna1bO55017 Cep78-201ENSMUST00000047704 2548 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Cacna1bO55017 Sept4-206ENSMUST00000122067 1303 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
Cacna1bO55017 Gm20049-201ENSMUST00000219950 730 ntBASIC19.15■□□□□ 0.66
Cacna1bO55017 Moap1-201ENSMUST00000173760 1312 ntAPPRIS P1 TSL 2 BASIC19.14■□□□□ 0.66
Cacna1bO55017 Gm6211-202ENSMUST00000167849 925 ntBASIC19.14■□□□□ 0.66
Cacna1bO55017 Gm8520-201ENSMUST00000186517 868 ntBASIC19.14■□□□□ 0.66
Cacna1bO55017 Aifm2-201ENSMUST00000067857 1442 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Cacna1bO55017 Rnf8-201ENSMUST00000024817 2077 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Cacna1bO55017 Clta-201ENSMUST00000107845 1031 ntAPPRIS ALT2 TSL 2 BASIC19.14■□□□□ 0.65
Cacna1bO55017 Vps51-209ENSMUST00000160590 840 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
Cacna1bO55017 Gm37856-201ENSMUST00000191634 999 ntBASIC19.14■□□□□ 0.65
Cacna1bO55017 Cops9-201ENSMUST00000097642 438 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Cacna1bO55017 Mgat5b-201ENSMUST00000103027 4258 ntAPPRIS P1 TSL 5 BASIC19.14■□□□□ 0.65
Cacna1bO55017 2410004B18Rik-201ENSMUST00000039571 1547 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Cacna1bO55017 Prdm11-205ENSMUST00000178666 1870 ntTSL 5 BASIC19.13■□□□□ 0.65
Cacna1bO55017 Fdx1l-201ENSMUST00000010348 812 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Cacna1bO55017 Dsg2-203ENSMUST00000121837 953 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
Cacna1bO55017 Gm15556-201ENSMUST00000122904 663 ntTSL 5 BASIC19.13■□□□□ 0.65
Cacna1bO55017 Mcl1-202ENSMUST00000178686 858 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
Cacna1bO55017 1700018M17Rik-201ENSMUST00000052502 456 ntBASIC19.13■□□□□ 0.65
Cacna1bO55017 Akt1s1-204ENSMUST00000107885 1812 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
Cacna1bO55017 Fgfbp3-201ENSMUST00000057337 1772 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Cacna1bO55017 Rnaseh2b-201ENSMUST00000022499 1494 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Cacna1bO55017 Gm960-204ENSMUST00000225896 2202 ntAPPRIS ALT2 BASIC19.13■□□□□ 0.65
Cacna1bO55017 Celf6-202ENSMUST00000118164 1583 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
Cacna1bO55017 Rbfox3-204ENSMUST00000106278 1542 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
Cacna1bO55017 Igfbp6-201ENSMUST00000023807 1112 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Cacna1bO55017 BC107364-201ENSMUST00000093126 1159 ntAPPRIS P4 TSL 1 (best) BASIC19.13■□□□□ 0.65
Cacna1bO55017 BC107364-202ENSMUST00000098841 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
Cacna1bO55017 Tmprss5-205ENSMUST00000170246 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
Cacna1bO55017 Mbp-208ENSMUST00000114676 1685 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
Cacna1bO55017 Ing2-201ENSMUST00000080353 2812 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Cacna1bO55017 Barhl1-202ENSMUST00000113847 2160 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Cacna1bO55017 Memo1-201ENSMUST00000078459 1513 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Retrieved 100 of 76,532 protein–RNA pairs in 35.5 ms