Protein–RNA interactions for Protein: O35492

Clk3, Dual specificity protein kinase CLK3, mousemouse

Predictions only

Length 638 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clk3O35492 March11-201ENSMUST00000126304 2146 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
Clk3O35492 Slc9a7-201ENSMUST00000072451 2512 ntAPPRIS P2 TSL 1 (best) BASIC18.78■□□□□ 0.6
Clk3O35492 Nphp3-201ENSMUST00000035167 5899 ntAPPRIS P2 TSL 1 (best) BASIC18.78■□□□□ 0.6
Clk3O35492 Hira-201ENSMUST00000004222 4218 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Clk3O35492 Cnr1-201ENSMUST00000057188 5807 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Clk3O35492 4930524B15Rik-201ENSMUST00000102829 2000 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Clk3O35492 Neurl4-213ENSMUST00000177476 4952 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
Clk3O35492 Chd5-205ENSMUST00000164662 9375 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
Clk3O35492 Chkb-201ENSMUST00000023289 1707 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Clk3O35492 Rab3il1-201ENSMUST00000113161 2225 ntAPPRIS P3 TSL 5 BASIC18.77■□□□□ 0.6
Clk3O35492 Schip1-205ENSMUST00000182532 2059 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
Clk3O35492 Ttc9b-201ENSMUST00000008088 2052 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Clk3O35492 Hoxa9-202ENSMUST00000114425 851 ntTSL 2 BASIC18.77■□□□□ 0.6
Clk3O35492 Sumf1-203ENSMUST00000167338 1044 ntAPPRIS ALT2 TSL 5 BASIC18.77■□□□□ 0.6
Clk3O35492 Pgp-201ENSMUST00000053024 1027 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Clk3O35492 Oaz1-201ENSMUST00000060987 1071 ntAPPRIS ALT1 TSL 5 BASIC18.77■□□□□ 0.6
Clk3O35492 Cdc42ep5-201ENSMUST00000076831 1025 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Clk3O35492 Fam83d-201ENSMUST00000029183 2266 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Clk3O35492 Picalm-215ENSMUST00000209068 3511 ntAPPRIS ALT2 TSL 5 BASIC18.77■□□□□ 0.6
Clk3O35492 Mgat2-201ENSMUST00000060579 2614 ntAPPRIS P1 BASIC18.77■□□□□ 0.6
Clk3O35492 Rps6ka3-201ENSMUST00000033671 7244 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
Clk3O35492 Lrig1-202ENSMUST00000101126 4951 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
Clk3O35492 Becn1-217ENSMUST00000172233 1493 ntTSL 5 BASIC18.77■□□□□ 0.59
Clk3O35492 Podxl-201ENSMUST00000026698 5379 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
Clk3O35492 Lmtk3-201ENSMUST00000072580 4807 ntAPPRIS P2 TSL 1 (best) BASIC18.76■□□□□ 0.59
Clk3O35492 Aplf-201ENSMUST00000032130 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Clk3O35492 Larp1-203ENSMUST00000178636 6617 ntAPPRIS P2 TSL 5 BASIC18.76■□□□□ 0.59
Clk3O35492 Gm43653-201ENSMUST00000198136 1608 ntTSL 3 BASIC18.76■□□□□ 0.59
Clk3O35492 E130311K13Rik-201ENSMUST00000061706 1640 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Clk3O35492 Rps2-ps6-201ENSMUST00000095471 855 ntBASIC18.76■□□□□ 0.59
Clk3O35492 Traf3-203ENSMUST00000117269 6972 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Clk3O35492 Syt5-201ENSMUST00000065957 1750 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Clk3O35492 Kctd20-204ENSMUST00000122163 2423 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
Clk3O35492 A130051J06Rik-201ENSMUST00000180649 2618 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
Clk3O35492 Hsf1-204ENSMUST00000226872 2104 ntBASIC18.75■□□□□ 0.59
Clk3O35492 Uqcrc1-201ENSMUST00000026743 1653 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Clk3O35492 Ak2-202ENSMUST00000102604 1781 ntAPPRIS ALT1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Clk3O35492 Cacnb1-205ENSMUST00000107562 1745 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
Clk3O35492 Gatad1-201ENSMUST00000007559 2545 ntAPPRIS P2 TSL 1 (best) BASIC18.74■□□□□ 0.59
Clk3O35492 Gtpbp2-217ENSMUST00000172170 2587 ntTSL 5 BASIC18.74■□□□□ 0.59
Clk3O35492 Fyn-204ENSMUST00000126486 2495 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
Clk3O35492 Tbxa2r-201ENSMUST00000105325 1765 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Clk3O35492 Cog1-202ENSMUST00000063776 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
Clk3O35492 Gm2415-203ENSMUST00000149952 435 ntTSL 5 BASIC18.74■□□□□ 0.59
Clk3O35492 Gm22238-201ENSMUST00000175222 88 ntBASIC18.74■□□□□ 0.59
Clk3O35492 Dact2-201ENSMUST00000053218 2808 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Clk3O35492 Zfp668-202ENSMUST00000106261 2410 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Clk3O35492 Cdk11b-202ENSMUST00000105598 2673 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
Clk3O35492 Sh3bp1-204ENSMUST00000109698 1923 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
Clk3O35492 Ercc6l2-208ENSMUST00000144763 1820 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
Clk3O35492 4930507D05Rik-201ENSMUST00000181110 1834 ntAPPRIS P1 BASIC18.73■□□□□ 0.59
Clk3O35492 Clta-204ENSMUST00000107849 1099 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
Clk3O35492 Clta-205ENSMUST00000107851 1135 ntAPPRIS P4 TSL 2 BASIC18.73■□□□□ 0.59
Clk3O35492 Bex4-201ENSMUST00000116527 837 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Clk3O35492 A030005L19Rik-201ENSMUST00000220768 806 ntAPPRIS P1 BASIC18.73■□□□□ 0.59
Clk3O35492 Ltbp4-205ENSMUST00000121175 5118 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
Clk3O35492 2310022A10Rik-205ENSMUST00000187960 1989 ntAPPRIS ALT2 TSL 5 BASIC18.73■□□□□ 0.59
Clk3O35492 Pbx1-206ENSMUST00000176790 1828 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Clk3O35492 Vamp4-204ENSMUST00000135241 1461 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Clk3O35492 5730507C01Rik-201ENSMUST00000063216 2431 ntAPPRIS P3 TSL 1 (best) BASIC18.72■□□□□ 0.59
Clk3O35492 Sos1-201ENSMUST00000068714 8919 ntAPPRIS P1 TSL 2 BASIC18.72■□□□□ 0.59
Clk3O35492 Zc3h8-201ENSMUST00000028866 1624 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Clk3O35492 Cers1-202ENSMUST00000140239 2711 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
Clk3O35492 Smox-205ENSMUST00000110182 985 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Clk3O35492 Map1lc3a-201ENSMUST00000029128 1112 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Clk3O35492 Alyref2-201ENSMUST00000081527 1273 ntAPPRIS P1 BASIC18.72■□□□□ 0.59
Clk3O35492 Rnaset2b-201ENSMUST00000089119 1013 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Clk3O35492 Mmp24-201ENSMUST00000029141 4306 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Clk3O35492 Stau2-201ENSMUST00000027052 2763 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Clk3O35492 Serbp1-207ENSMUST00000203436 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
Clk3O35492 Rem1-201ENSMUST00000000369 1663 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Clk3O35492 Crocc-202ENSMUST00000097816 6273 ntTSL 5 BASIC18.72■□□□□ 0.59
Clk3O35492 Csf2ra-201ENSMUST00000076046 1849 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Clk3O35492 Stk35-201ENSMUST00000165413 2882 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Clk3O35492 Tmem64-201ENSMUST00000062684 4670 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Clk3O35492 Zmiz2-201ENSMUST00000012612 4199 ntAPPRIS P2 TSL 5 BASIC18.71■□□□□ 0.59
Clk3O35492 Tex264-202ENSMUST00000163441 1896 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Clk3O35492 Cerk-201ENSMUST00000044332 4518 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Clk3O35492 Ovol2-201ENSMUST00000037423 1539 ntAPPRIS P4 TSL 1 (best) BASIC18.71■□□□□ 0.59
Clk3O35492 Brpf3-201ENSMUST00000004985 5766 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Clk3O35492 Emc10-201ENSMUST00000118515 1662 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
Clk3O35492 E130307A14Rik-202ENSMUST00000133302 438 ntTSL 5 BASIC18.71■□□□□ 0.59
Clk3O35492 Gm7143-201ENSMUST00000222811 859 ntBASIC18.71■□□□□ 0.59
Clk3O35492 Cacnb1-203ENSMUST00000103144 2236 ntTSL 5 BASIC18.71■□□□□ 0.59
Clk3O35492 B130046B21Rik-201ENSMUST00000181510 2216 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
Clk3O35492 Setd4-202ENSMUST00000113951 1826 ntAPPRIS P1 TSL 5 BASIC18.71■□□□□ 0.59
Clk3O35492 Gp1bb-202ENSMUST00000167388 1847 ntAPPRIS ALT2 TSL 2 BASIC18.71■□□□□ 0.59
Clk3O35492 Patz1-203ENSMUST00000094471 2930 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
Clk3O35492 Ung-202ENSMUST00000102584 2136 ntAPPRIS P3 TSL 1 (best) BASIC18.71■□□□□ 0.59
Clk3O35492 Gabbr1-201ENSMUST00000025338 5248 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Clk3O35492 Irx3-202ENSMUST00000175795 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
Clk3O35492 Atoh8-201ENSMUST00000042646 2355 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Clk3O35492 Cep78-201ENSMUST00000047704 2548 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Clk3O35492 Ankrd17-214ENSMUST00000218526 4938 ntTSL 5 BASIC18.7■□□□□ 0.58
Clk3O35492 Tpm1-212ENSMUST00000113696 1714 ntTSL 2 BASIC18.7■□□□□ 0.58
Clk3O35492 Gm46212-201ENSMUST00000220256 1003 ntTSL 5 BASIC18.7■□□□□ 0.58
Clk3O35492 Tbc1d25-204ENSMUST00000172020 2441 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
Clk3O35492 Cnpy3-201ENSMUST00000059844 1908 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Clk3O35492 Rab1a-203ENSMUST00000109602 2626 ntTSL 5 BASIC18.69■□□□□ 0.58
Clk3O35492 2900079G21Rik-201ENSMUST00000139552 1139 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Retrieved 100 of 76,532 protein–RNA pairs in 16.9 ms