Protein–RNA interactions for Protein: E9Q735

Ube4a, Ubiquitin conjugation factor E4 A, mousemouse

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ube4aE9Q735 Mfap4-201ENSMUST00000040522 939 ntAPPRIS ALT2 TSL 2 BASIC24.06■■□□□ 1.44
Ube4aE9Q735 Sept4-206ENSMUST00000122067 1303 ntTSL 1 (best) BASIC24.06■■□□□ 1.44
Ube4aE9Q735 Gm12504-201ENSMUST00000120860 2231 ntBASIC24.06■■□□□ 1.44
Ube4aE9Q735 Fdxacb1-203ENSMUST00000176335 1817 ntTSL 1 (best) BASIC24.05■■□□□ 1.44
Ube4aE9Q735 Nfkbid-203ENSMUST00000108176 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC24.05■■□□□ 1.44
Ube4aE9Q735 M5C1000I18Rik-202ENSMUST00000186205 1414 ntTSL 1 (best) BASIC24.05■■□□□ 1.44
Ube4aE9Q735 Zfp467-201ENSMUST00000101443 599 ntTSL 1 (best) BASIC24.05■■□□□ 1.44
Ube4aE9Q735 Gm13234-201ENSMUST00000120010 747 ntBASIC24.05■■□□□ 1.44
Ube4aE9Q735 Stmn4-203ENSMUST00000120229 1281 ntTSL 2 BASIC24.05■■□□□ 1.44
Ube4aE9Q735 Dpyd-204ENSMUST00000149101 531 ntTSL 3 BASIC24.05■■□□□ 1.44
Ube4aE9Q735 Ccdc85b-201ENSMUST00000179549 609 ntAPPRIS P1 BASIC24.05■■□□□ 1.44
Ube4aE9Q735 Mrpl52-204ENSMUST00000199195 463 ntTSL 1 (best) BASIC24.05■■□□□ 1.44
Ube4aE9Q735 Ccdc84-211ENSMUST00000217270 681 ntTSL 1 (best) BASIC24.05■■□□□ 1.44
Ube4aE9Q735 Tead4-202ENSMUST00000112157 1909 ntTSL 1 (best) BASIC24.05■■□□□ 1.44
Ube4aE9Q735 Slc9a7-201ENSMUST00000072451 2512 ntAPPRIS P2 TSL 1 (best) BASIC24.05■■□□□ 1.44
Ube4aE9Q735 Cacnb1-202ENSMUST00000092736 1880 ntTSL 1 (best) BASIC24.04■■□□□ 1.44
Ube4aE9Q735 Whrn-204ENSMUST00000095037 2419 ntTSL 1 (best) BASIC24.04■■□□□ 1.44
Ube4aE9Q735 Fgfrl1-202ENSMUST00000112560 2318 ntTSL 1 (best) BASIC24.04■■□□□ 1.44
Ube4aE9Q735 Nipsnap2-205ENSMUST00000186265 1600 ntAPPRIS P1 TSL 2 BASIC24.04■■□□□ 1.44
Ube4aE9Q735 Espn-205ENSMUST00000084114 1645 ntTSL 1 (best) BASIC24.04■■□□□ 1.44
Ube4aE9Q735 Snhg20-202ENSMUST00000149822 593 ntTSL 1 (best) BASIC24.04■■□□□ 1.44
Ube4aE9Q735 H2-Ab1-201ENSMUST00000040828 1211 ntAPPRIS P1 TSL 1 (best) BASIC24.04■■□□□ 1.44
Ube4aE9Q735 Hist1h2ao-201ENSMUST00000091745 480 ntAPPRIS P1 BASIC24.04■■□□□ 1.44
Ube4aE9Q735 Ppp1r12c-201ENSMUST00000013886 2983 ntAPPRIS P1 TSL 1 (best) BASIC24.04■■□□□ 1.44
Ube4aE9Q735 Spock1-204ENSMUST00000186271 2005 ntAPPRIS P3 TSL 1 (best) BASIC24.03■■□□□ 1.44
Ube4aE9Q735 Sh3bp1-204ENSMUST00000109698 1923 ntTSL 1 (best) BASIC24.03■■□□□ 1.44
Ube4aE9Q735 Memo1-201ENSMUST00000078459 1513 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
Ube4aE9Q735 Olfr94-201ENSMUST00000055324 1304 ntAPPRIS P2 BASIC24.03■■□□□ 1.44
Ube4aE9Q735 Rnf32-204ENSMUST00000160246 1565 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
Ube4aE9Q735 Uncx-201ENSMUST00000172997 2498 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
Ube4aE9Q735 Phf12-202ENSMUST00000108360 3047 ntTSL 1 (best) BASIC24.02■■□□□ 1.44
Ube4aE9Q735 Polr2j-202ENSMUST00000111127 900 ntTSL 2 BASIC24.02■■□□□ 1.44
Ube4aE9Q735 Lmo1-201ENSMUST00000036992 1282 ntAPPRIS P3 TSL 1 (best) BASIC24.02■■□□□ 1.44
Ube4aE9Q735 E130116L18Rik-201ENSMUST00000066954 306 ntAPPRIS P1 BASIC24.02■■□□□ 1.44
Ube4aE9Q735 Ypel1-201ENSMUST00000035682 3322 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
Ube4aE9Q735 Pick1-204ENSMUST00000163571 2054 ntAPPRIS P1 TSL 5 BASIC24.02■■□□□ 1.44
Ube4aE9Q735 Pan3-201ENSMUST00000031651 5048 ntAPPRIS P2 TSL 5 BASIC24.02■■□□□ 1.44
Ube4aE9Q735 Kcnj12-202ENSMUST00000089184 2291 ntAPPRIS P3 TSL 1 (best) BASIC24.01■■□□□ 1.43
Ube4aE9Q735 Reep4-203ENSMUST00000226563 1444 ntBASIC24.01■■□□□ 1.43
Ube4aE9Q735 Eml4-201ENSMUST00000049503 5109 ntAPPRIS P3 TSL 1 (best) BASIC24.01■■□□□ 1.43
Ube4aE9Q735 Cmtm7-204ENSMUST00000216760 665 ntTSL 1 (best) BASIC24.01■■□□□ 1.43
Ube4aE9Q735 Rras-201ENSMUST00000044111 995 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
Ube4aE9Q735 Lsm2-201ENSMUST00000007266 873 ntTSL 1 (best) BASIC24.01■■□□□ 1.43
Ube4aE9Q735 Ppp4r2-201ENSMUST00000063854 4874 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
Ube4aE9Q735 Cnrip1-201ENSMUST00000058159 1654 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
Ube4aE9Q735 Fam60a-202ENSMUST00000081956 2737 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
Ube4aE9Q735 Thap11-201ENSMUST00000040445 1819 ntAPPRIS P1 BASIC24■■□□□ 1.43
Ube4aE9Q735 Gm26617-201ENSMUST00000180381 4429 ntTSL 3 BASIC24■■□□□ 1.43
Ube4aE9Q735 Cant1-205ENSMUST00000106289 1600 ntTSL 1 (best) BASIC24■■□□□ 1.43
Ube4aE9Q735 Impa2-201ENSMUST00000025403 1661 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
Ube4aE9Q735 Gm12660-201ENSMUST00000123764 664 ntTSL 3 BASIC24■■□□□ 1.43
Ube4aE9Q735 Erh-205ENSMUST00000218740 981 ntTSL 2 BASIC24■■□□□ 1.43
Ube4aE9Q735 Cadm1-201ENSMUST00000034581 1254 ntAPPRIS ALT1 TSL 1 (best) BASIC24■■□□□ 1.43
Ube4aE9Q735 Wasl-202ENSMUST00000041737 1298 ntTSL 1 (best) BASIC24■■□□□ 1.43
Ube4aE9Q735 Vkorc1l1-202ENSMUST00000073945 650 ntTSL 2 BASIC24■■□□□ 1.43
Ube4aE9Q735 A230052G05Rik-201ENSMUST00000050921 2302 ntBASIC24■■□□□ 1.43
Ube4aE9Q735 Tex264-202ENSMUST00000163441 1896 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
Ube4aE9Q735 Dda1-202ENSMUST00000124745 1933 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
Ube4aE9Q735 L3mbtl4-201ENSMUST00000093007 2445 ntAPPRIS P1 TSL 5 BASIC24■■□□□ 1.43
Ube4aE9Q735 Cep78-201ENSMUST00000047704 2548 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
Ube4aE9Q735 Ubl4a-206ENSMUST00000155676 2442 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
Ube4aE9Q735 1700017B05Rik-204ENSMUST00000215298 1023 ntAPPRIS ALT2 TSL 1 (best) BASIC23.99■■□□□ 1.43
Ube4aE9Q735 Oxld1-201ENSMUST00000044007 813 ntAPPRIS P2 TSL 1 (best) BASIC23.99■■□□□ 1.43
Ube4aE9Q735 Zfp467-202ENSMUST00000114556 2287 ntTSL 1 (best) BASIC23.99■■□□□ 1.43
Ube4aE9Q735 Clta-202ENSMUST00000107846 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC23.98■■□□□ 1.43
Ube4aE9Q735 Gm26682-201ENSMUST00000180850 1729 ntTSL 1 (best) BASIC23.98■■□□□ 1.43
Ube4aE9Q735 Slc35b2-201ENSMUST00000041353 2326 ntTSL 1 (best) BASIC23.98■■□□□ 1.43
Ube4aE9Q735 D830036C21Rik-201ENSMUST00000207444 453 ntTSL 3 BASIC23.98■■□□□ 1.43
Ube4aE9Q735 E530011L22Rik-202ENSMUST00000216791 2007 ntTSL 1 (best) BASIC23.98■■□□□ 1.43
Ube4aE9Q735 Nrarp-201ENSMUST00000104999 2582 ntAPPRIS P1 BASIC23.97■■□□□ 1.43
Ube4aE9Q735 Spsb3-204ENSMUST00000119829 1955 ntAPPRIS ALT2 TSL 2 BASIC23.97■■□□□ 1.43
Ube4aE9Q735 Speg-206ENSMUST00000122266 917 ntTSL 1 (best) BASIC23.97■■□□□ 1.43
Ube4aE9Q735 Hoxa11os-201ENSMUST00000134512 1839 ntTSL 1 (best) BASIC23.97■■□□□ 1.43
Ube4aE9Q735 Fam49b-202ENSMUST00000164532 1770 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
Ube4aE9Q735 Gm44899-202ENSMUST00000209433 511 ntTSL 5 BASIC23.97■■□□□ 1.43
Ube4aE9Q735 Hoxd1-201ENSMUST00000047793 1862 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
Ube4aE9Q735 Cystm1-201ENSMUST00000050584 831 ntAPPRIS ALT2 TSL 1 (best) BASIC23.97■■□□□ 1.43
Ube4aE9Q735 Ccdc84-201ENSMUST00000053286 1725 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
Ube4aE9Q735 Ptrh1-201ENSMUST00000066352 952 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
Ube4aE9Q735 Nab1-201ENSMUST00000069792 3874 ntAPPRIS P2 TSL 1 (best) BASIC23.97■■□□□ 1.43
Ube4aE9Q735 Rnaset2b-202ENSMUST00000179728 2448 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
Ube4aE9Q735 Reep6-207ENSMUST00000186864 2015 ntAPPRIS P3 TSL 1 (best) BASIC23.96■■□□□ 1.43
Ube4aE9Q735 Tinagl1-202ENSMUST00000105998 1976 ntAPPRIS P2 TSL 1 (best) BASIC23.96■■□□□ 1.43
Ube4aE9Q735 Gtpbp6-201ENSMUST00000077220 1617 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
Ube4aE9Q735 Derl2-207ENSMUST00000171041 1466 ntTSL 1 (best) BASIC23.96■■□□□ 1.43
Ube4aE9Q735 A930001C03Rik-204ENSMUST00000154407 1402 ntTSL 1 (best) BASIC23.96■■□□□ 1.43
Ube4aE9Q735 Gfra4-205ENSMUST00000110239 810 ntAPPRIS ALT2 TSL 1 (best) BASIC23.96■■□□□ 1.43
Ube4aE9Q735 Rab6b-202ENSMUST00000189134 716 ntTSL 3 BASIC23.96■■□□□ 1.43
Ube4aE9Q735 Specc1-215ENSMUST00000202744 674 ntTSL 3 BASIC23.96■■□□□ 1.43
Ube4aE9Q735 Gpr160-204ENSMUST00000108261 2213 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
Ube4aE9Q735 Ubl3-202ENSMUST00000164904 2001 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
Ube4aE9Q735 Ntf5-201ENSMUST00000058879 1963 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.42
Ube4aE9Q735 Tmem234-215ENSMUST00000173758 453 ntTSL 2 BASIC23.95■■□□□ 1.42
Ube4aE9Q735 Prmt1-210ENSMUST00000208829 621 ntTSL 5 BASIC23.95■■□□□ 1.42
Ube4aE9Q735 Fezf2-203ENSMUST00000224714 2429 ntAPPRIS P1 BASIC23.95■■□□□ 1.42
Ube4aE9Q735 Fbxw2-201ENSMUST00000028220 2030 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
Ube4aE9Q735 Dus1l-203ENSMUST00000106135 1863 ntAPPRIS ALT2 TSL 5 BASIC23.94■■□□□ 1.42
Ube4aE9Q735 Stoml2-201ENSMUST00000030169 1874 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
Ube4aE9Q735 Pomgnt1-203ENSMUST00000106498 2719 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
Ube4aE9Q735 1700105P06Rik-201ENSMUST00000186160 1772 ntBASIC23.94■■□□□ 1.42
Retrieved 100 of 76,532 protein–RNA pairs in 21.7 ms