Protein–RNA interactions for Protein: D3Z4R1

Hfm1, Probable ATP-dependent DNA helicase HFM1, mousemouse

Predictions only

Length 1,434 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hfm1D3Z4R1 Fezf2-201ENSMUST00000022262 2188 ntAPPRIS P1 TSL 1 (best) BASIC28.38■■■□□ 2.13
Hfm1D3Z4R1 Rnf8-201ENSMUST00000024817 2077 ntAPPRIS P1 TSL 1 (best) BASIC28.38■■■□□ 2.13
Hfm1D3Z4R1 Tmem121-201ENSMUST00000058491 1574 ntAPPRIS P1 TSL 1 (best) BASIC28.38■■■□□ 2.13
Hfm1D3Z4R1 Cdkn1c-201ENSMUST00000037287 1901 ntAPPRIS P3 TSL 1 (best) BASIC28.37■■■□□ 2.13
Hfm1D3Z4R1 Strn3-202ENSMUST00000169503 2791 ntTSL 1 (best) BASIC28.37■■■□□ 2.13
Hfm1D3Z4R1 Gm16764-202ENSMUST00000148931 433 ntTSL 5 BASIC28.37■■■□□ 2.13
Hfm1D3Z4R1 AV026068-208ENSMUST00000189098 286 ntTSL 5 BASIC28.37■■■□□ 2.13
Hfm1D3Z4R1 1700018M17Rik-201ENSMUST00000052502 456 ntBASIC28.37■■■□□ 2.13
Hfm1D3Z4R1 BC107364-201ENSMUST00000093126 1159 ntAPPRIS P4 TSL 1 (best) BASIC28.37■■■□□ 2.13
Hfm1D3Z4R1 BC107364-202ENSMUST00000098841 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC28.37■■■□□ 2.13
Hfm1D3Z4R1 Ccdc84-201ENSMUST00000053286 1725 ntAPPRIS P1 TSL 1 (best) BASIC28.37■■■□□ 2.13
Hfm1D3Z4R1 1700123O20Rik-201ENSMUST00000038539 1843 ntAPPRIS P1 TSL 1 (best) BASIC28.37■■■□□ 2.13
Hfm1D3Z4R1 Foxj3-209ENSMUST00000162267 1391 ntAPPRIS ALT2 TSL 1 (best) BASIC28.37■■■□□ 2.13
Hfm1D3Z4R1 Ern1-203ENSMUST00000106800 654 ntTSL 3 BASIC28.36■■■□□ 2.13
Hfm1D3Z4R1 Aifm2-201ENSMUST00000067857 1442 ntAPPRIS P1 TSL 1 (best) BASIC28.36■■■□□ 2.13
Hfm1D3Z4R1 Lsm14b-201ENSMUST00000055485 2534 ntAPPRIS P1 TSL 1 (best) BASIC28.35■■■□□ 2.13
Hfm1D3Z4R1 Coro1a-209ENSMUST00000173108 1170 ntTSL 5 BASIC28.35■■■□□ 2.13
Hfm1D3Z4R1 Nudt14-201ENSMUST00000002881 734 ntTSL 2 BASIC28.35■■■□□ 2.13
Hfm1D3Z4R1 Krtap5-3-202ENSMUST00000187512 1652 ntAPPRIS P2 BASIC28.35■■■□□ 2.13
Hfm1D3Z4R1 Arhgef25-205ENSMUST00000218654 2475 ntTSL 5 BASIC28.35■■■□□ 2.13
Hfm1D3Z4R1 Trafd1-201ENSMUST00000042312 2503 ntAPPRIS P4 TSL 1 (best) BASIC28.35■■■□□ 2.13
Hfm1D3Z4R1 Gm53-201ENSMUST00000129907 1172 ntTSL 2 BASIC28.35■■■□□ 2.13
Hfm1D3Z4R1 Myl6-206ENSMUST00000218127 691 ntAPPRIS ALT1 TSL 2 BASIC28.35■■■□□ 2.13
Hfm1D3Z4R1 Elf2-204ENSMUST00000108053 2611 ntTSL 1 (best) BASIC28.34■■■□□ 2.13
Hfm1D3Z4R1 Jmjd7-201ENSMUST00000044675 1373 ntAPPRIS P1 TSL 1 (best) BASIC28.34■■■□□ 2.13
Hfm1D3Z4R1 Olfm1-201ENSMUST00000028177 2757 ntAPPRIS P1 TSL 1 (best) BASIC28.34■■■□□ 2.13
Hfm1D3Z4R1 Arrdc2-201ENSMUST00000002989 2355 ntAPPRIS P1 TSL 1 (best) BASIC28.34■■■□□ 2.13
Hfm1D3Z4R1 Smkr-ps-202ENSMUST00000141679 901 ntTSL 1 (best) BASIC28.34■■■□□ 2.13
Hfm1D3Z4R1 Dedd-203ENSMUST00000111299 2322 ntAPPRIS P1 TSL 1 (best) BASIC28.34■■■□□ 2.13
Hfm1D3Z4R1 Zbtb7a-203ENSMUST00000119606 1841 ntAPPRIS P1 TSL 1 (best) BASIC28.34■■■□□ 2.13
Hfm1D3Z4R1 Whrn-208ENSMUST00000119294 2632 ntTSL 1 (best) BASIC28.33■■■□□ 2.13
Hfm1D3Z4R1 Barhl1-203ENSMUST00000113849 2102 ntAPPRIS P1 TSL 1 (best) BASIC28.33■■■□□ 2.13
Hfm1D3Z4R1 Ramp1-203ENSMUST00000188475 711 ntTSL 3 BASIC28.33■■■□□ 2.13
Hfm1D3Z4R1 Gm40460-201ENSMUST00000211591 735 ntAPPRIS P1 BASIC28.33■■■□□ 2.13
Hfm1D3Z4R1 Gm20049-201ENSMUST00000219950 730 ntBASIC28.33■■■□□ 2.13
Hfm1D3Z4R1 Spsb3-203ENSMUST00000117890 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC28.33■■■□□ 2.13
Hfm1D3Z4R1 Maf1-211ENSMUST00000161527 1743 ntAPPRIS P2 TSL 5 BASIC28.32■■■□□ 2.12
Hfm1D3Z4R1 Ptbp3-204ENSMUST00000140925 606 ntTSL 3 BASIC28.32■■■□□ 2.12
Hfm1D3Z4R1 Gm5408-201ENSMUST00000197998 747 ntBASIC28.32■■■□□ 2.12
Hfm1D3Z4R1 Rbm38-201ENSMUST00000029014 1768 ntAPPRIS P1 TSL 1 (best) BASIC28.32■■■□□ 2.12
Hfm1D3Z4R1 Krt8-201ENSMUST00000023952 1805 ntAPPRIS P1 TSL 1 (best) BASIC28.32■■■□□ 2.12
Hfm1D3Z4R1 Cers5-201ENSMUST00000023762 2096 ntAPPRIS P2 TSL 1 (best) BASIC28.31■■■□□ 2.12
Hfm1D3Z4R1 Lypd3-201ENSMUST00000080718 1649 ntAPPRIS P1 TSL 1 (best) BASIC28.31■■■□□ 2.12
Hfm1D3Z4R1 Fance-202ENSMUST00000114801 1751 ntTSL 1 (best) BASIC28.31■■■□□ 2.12
Hfm1D3Z4R1 Tpsg1-204ENSMUST00000160920 867 ntTSL 3 BASIC28.31■■■□□ 2.12
Hfm1D3Z4R1 1700101I19Rik-202ENSMUST00000186712 510 ntBASIC28.31■■■□□ 2.12
Hfm1D3Z4R1 1700001C19Rik-201ENSMUST00000061885 1622 ntAPPRIS P3 TSL 1 (best) BASIC28.31■■■□□ 2.12
Hfm1D3Z4R1 Slc35e2-203ENSMUST00000118607 2166 ntAPPRIS P1 TSL 1 (best) BASIC28.3■■■□□ 2.12
Hfm1D3Z4R1 Ube2b-202ENSMUST00000109086 585 ntAPPRIS P1 TSL 2 BASIC28.3■■■□□ 2.12
Hfm1D3Z4R1 Gm12473-201ENSMUST00000137535 579 ntTSL 5 BASIC28.3■■■□□ 2.12
Hfm1D3Z4R1 Nnat-205ENSMUST00000153739 1146 ntAPPRIS ALT1 TSL 1 (best) BASIC28.3■■■□□ 2.12
Hfm1D3Z4R1 Nnat-206ENSMUST00000172487 404 ntTSL 5 BASIC28.3■■■□□ 2.12
Hfm1D3Z4R1 Nnat-210ENSMUST00000173839 1135 ntTSL 1 (best) BASIC28.3■■■□□ 2.12
Hfm1D3Z4R1 Uqcc2-201ENSMUST00000025045 500 ntAPPRIS P1 TSL 1 (best) BASIC28.3■■■□□ 2.12
Hfm1D3Z4R1 H2-Q7-201ENSMUST00000071951 1406 ntAPPRIS P2 TSL 1 (best) BASIC28.3■■■□□ 2.12
Hfm1D3Z4R1 Dedd2-202ENSMUST00000205271 1942 ntAPPRIS P1 TSL 5 BASIC28.3■■■□□ 2.12
Hfm1D3Z4R1 Ube2e3-201ENSMUST00000028398 2249 ntAPPRIS P1 TSL 1 (best) BASIC28.3■■■□□ 2.12
Hfm1D3Z4R1 Lrp2-202ENSMUST00000092551 2228 ntTSL 1 (best) BASIC28.3■■■□□ 2.12
Hfm1D3Z4R1 Vkorc1-202ENSMUST00000119922 387 ntTSL 3 BASIC28.29■■■□□ 2.12
Hfm1D3Z4R1 Ndufa12-204ENSMUST00000179990 566 ntTSL 1 (best) BASIC28.29■■■□□ 2.12
Hfm1D3Z4R1 Ube2b-201ENSMUST00000020657 1792 ntAPPRIS P1 TSL 1 (best) BASIC28.29■■■□□ 2.12
Hfm1D3Z4R1 Cldn5-201ENSMUST00000043577 1414 ntAPPRIS P1 BASIC28.29■■■□□ 2.12
Hfm1D3Z4R1 Tcap-201ENSMUST00000008021 948 ntAPPRIS P1 TSL 1 (best) BASIC28.29■■■□□ 2.12
Hfm1D3Z4R1 Brwd1-203ENSMUST00000113827 2382 ntTSL 1 (best) BASIC28.29■■■□□ 2.12
Hfm1D3Z4R1 Pi4kb-207ENSMUST00000167008 1962 ntTSL 1 (best) BASIC28.29■■■□□ 2.12
Hfm1D3Z4R1 Ccr10-201ENSMUST00000062759 1726 ntAPPRIS P1 TSL 1 (best) BASIC28.29■■■□□ 2.12
Hfm1D3Z4R1 Vps51-209ENSMUST00000160590 840 ntTSL 1 (best) BASIC28.28■■■□□ 2.12
Hfm1D3Z4R1 Foxi3-202ENSMUST00000163089 1278 ntAPPRIS ALT2 TSL 5 BASIC28.28■■■□□ 2.12
Hfm1D3Z4R1 Gm2990-201ENSMUST00000180662 1118 ntTSL 1 (best) BASIC28.28■■■□□ 2.12
Hfm1D3Z4R1 Foxi3-201ENSMUST00000069634 1206 ntAPPRIS P2 TSL 5 BASIC28.28■■■□□ 2.12
Hfm1D3Z4R1 AC122428.2-201ENSMUST00000216321 1832 ntBASIC28.28■■■□□ 2.12
Hfm1D3Z4R1 Nxph4-201ENSMUST00000095266 1675 ntAPPRIS P1 TSL 1 (best) BASIC28.28■■■□□ 2.12
Hfm1D3Z4R1 2610528J11Rik-202ENSMUST00000106367 736 ntAPPRIS P1 TSL 2 BASIC28.27■■■□□ 2.12
Hfm1D3Z4R1 Gm13168-201ENSMUST00000121771 632 ntBASIC28.27■■■□□ 2.12
Hfm1D3Z4R1 Gm3264-202ENSMUST00000166776 882 ntAPPRIS ALT2 TSL 5 BASIC28.27■■■□□ 2.12
Hfm1D3Z4R1 Gm45894-202ENSMUST00000212728 1097 ntTSL 1 (best) BASIC28.27■■■□□ 2.12
Hfm1D3Z4R1 Hikeshi-201ENSMUST00000075010 715 ntTSL 3 BASIC28.27■■■□□ 2.12
Hfm1D3Z4R1 Dgat2-201ENSMUST00000033001 2262 ntAPPRIS P1 TSL 1 (best) BASIC28.27■■■□□ 2.12
Hfm1D3Z4R1 AA543186-201ENSMUST00000180841 1696 ntTSL 1 (best) BASIC28.27■■■□□ 2.12
Hfm1D3Z4R1 Arhgap9-204ENSMUST00000219511 2217 ntAPPRIS ALT2 TSL 1 (best) BASIC28.27■■■□□ 2.12
Hfm1D3Z4R1 Dao-201ENSMUST00000086599 1525 ntTSL 1 (best) BASIC28.27■■■□□ 2.12
Hfm1D3Z4R1 Atp23-202ENSMUST00000168520 1043 ntAPPRIS P1 TSL 1 (best) BASIC28.26■■■□□ 2.12
Hfm1D3Z4R1 Gm10655-201ENSMUST00000098658 1397 ntBASIC28.26■■■□□ 2.11
Hfm1D3Z4R1 Ccdc9-201ENSMUST00000041010 2379 ntAPPRIS P3 TSL 1 (best) BASIC28.26■■■□□ 2.11
Hfm1D3Z4R1 Hnrnpab-201ENSMUST00000074669 2370 ntAPPRIS P3 TSL 1 (best) BASIC28.26■■■□□ 2.11
Hfm1D3Z4R1 Rab7-202ENSMUST00000113596 1657 ntAPPRIS P1 TSL 1 (best) BASIC28.26■■■□□ 2.11
Hfm1D3Z4R1 Josd2-204ENSMUST00000118628 864 ntAPPRIS P1 TSL 2 BASIC28.26■■■□□ 2.11
Hfm1D3Z4R1 Zfp560-202ENSMUST00000143992 608 ntTSL 1 (best) BASIC28.26■■■□□ 2.11
Hfm1D3Z4R1 Gm6211-202ENSMUST00000167849 925 ntBASIC28.26■■■□□ 2.11
Hfm1D3Z4R1 Gm38205-201ENSMUST00000192243 258 ntBASIC28.26■■■□□ 2.11
Hfm1D3Z4R1 Josd2-201ENSMUST00000035844 930 ntAPPRIS P1 TSL 1 (best) BASIC28.26■■■□□ 2.11
Hfm1D3Z4R1 Dalrd3-201ENSMUST00000019183 1746 ntAPPRIS P1 TSL 1 (best) BASIC28.25■■■□□ 2.11
Hfm1D3Z4R1 Gm21992-201ENSMUST00000172000 1434 ntAPPRIS P1 TSL 2 BASIC28.25■■■□□ 2.11
Hfm1D3Z4R1 Gm21992-206ENSMUST00000179909 1435 ntTSL 5 BASIC28.25■■■□□ 2.11
Hfm1D3Z4R1 Hhex-201ENSMUST00000025944 1802 ntAPPRIS P1 TSL 1 (best) BASIC28.25■■■□□ 2.11
Hfm1D3Z4R1 Rgs19-207ENSMUST00000108779 642 ntTSL 5 BASIC28.25■■■□□ 2.11
Hfm1D3Z4R1 Shisa5-202ENSMUST00000112059 1910 ntAPPRIS ALT2 TSL 1 (best) BASIC28.24■■■□□ 2.11
Hfm1D3Z4R1 1110004E09Rik-201ENSMUST00000023694 1143 ntAPPRIS P1 TSL 1 (best) BASIC28.24■■■□□ 2.11
Hfm1D3Z4R1 Gm6365-201ENSMUST00000054711 744 ntBASIC28.24■■■□□ 2.11
Hfm1D3Z4R1 Gyg-201ENSMUST00000118015 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC28.23■■■□□ 2.11
Retrieved 100 of 76,532 protein–RNA pairs in 36.9 ms