Protein–RNA interactions for Protein: A0A075B6B4

Trav6-4, T cell receptor alpha variable 6-4 (Fragment), mousemouse

Predictions only

Length 115 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav6-4A0A075B6B4 Slc12a8-204ENSMUST00000121925 2656 ntAPPRIS P2 TSL 5 BASIC15.24■□□□□ 0.03
Trav6-4A0A075B6B4 Twist2-201ENSMUST00000007949 1329 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Trav6-4A0A075B6B4 Gyg-201ENSMUST00000118015 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
Trav6-4A0A075B6B4 Nkain1-201ENSMUST00000105993 1202 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Trav6-4A0A075B6B4 Gm11586-201ENSMUST00000123060 566 ntTSL 2 BASIC15.24■□□□□ 0.03
Trav6-4A0A075B6B4 Kcnma1-215ENSMUST00000190339 890 ntTSL 5 BASIC15.24■□□□□ 0.03
Trav6-4A0A075B6B4 AC122379.1-201ENSMUST00000220658 355 ntTSL 3 BASIC15.24■□□□□ 0.03
Trav6-4A0A075B6B4 Kcnt1-203ENSMUST00000114172 5219 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
Trav6-4A0A075B6B4 Lmtk3-204ENSMUST00000209617 5051 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
Trav6-4A0A075B6B4 Vmn1r17-205ENSMUST00000228342 2230 ntAPPRIS P2 BASIC15.24■□□□□ 0.03
Trav6-4A0A075B6B4 Gm5475-201ENSMUST00000132119 2608 ntAPPRIS P5 TSL 1 (best) BASIC15.24■□□□□ 0.03
Trav6-4A0A075B6B4 Krt5-201ENSMUST00000023709 2190 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Trav6-4A0A075B6B4 Mmp15-201ENSMUST00000034243 5135 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Trav6-4A0A075B6B4 Larp4b-204ENSMUST00000188939 2658 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Trav6-4A0A075B6B4 Rusc2-201ENSMUST00000035645 5300 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Trav6-4A0A075B6B4 Crocc-202ENSMUST00000097816 6273 ntTSL 5 BASIC15.23■□□□□ 0.03
Trav6-4A0A075B6B4 Fbxw2-203ENSMUST00000113075 2260 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Trav6-4A0A075B6B4 Exoc3l2-201ENSMUST00000011407 2200 ntTSL 5 BASIC15.23■□□□□ 0.03
Trav6-4A0A075B6B4 Rhno1-203ENSMUST00000112152 2015 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Trav6-4A0A075B6B4 Spock1-204ENSMUST00000186271 2005 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
Trav6-4A0A075B6B4 Cdkl3-210ENSMUST00000121591 2387 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
Trav6-4A0A075B6B4 4933406I18Rik-202ENSMUST00000163996 904 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Trav6-4A0A075B6B4 Gm21956-201ENSMUST00000179946 522 ntBASIC15.23■□□□□ 0.03
Trav6-4A0A075B6B4 2810025M15Rik-201ENSMUST00000061537 1194 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Trav6-4A0A075B6B4 Dusp26-205ENSMUST00000170204 1627 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
Trav6-4A0A075B6B4 Hsf1-207ENSMUST00000228371 2102 ntBASIC15.23■□□□□ 0.03
Trav6-4A0A075B6B4 Stx3-202ENSMUST00000069285 2810 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Trav6-4A0A075B6B4 Prrt1-201ENSMUST00000015620 1940 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
Trav6-4A0A075B6B4 Evi5l-209ENSMUST00000177053 1542 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
Trav6-4A0A075B6B4 Dusp22-203ENSMUST00000110310 2319 ntTSL 2 BASIC15.22■□□□□ 0.03
Trav6-4A0A075B6B4 Mcmbp-202ENSMUST00000119081 2347 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Trav6-4A0A075B6B4 Glipr2-201ENSMUST00000030202 2320 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Trav6-4A0A075B6B4 Hpse-202ENSMUST00000112908 1958 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Trav6-4A0A075B6B4 Gm14486-201ENSMUST00000144704 644 ntTSL 3 BASIC15.22■□□□□ 0.03
Trav6-4A0A075B6B4 Ly6h-206ENSMUST00000156032 752 ntAPPRIS P3 TSL 3 BASIC15.22■□□□□ 0.03
Trav6-4A0A075B6B4 Ly6h-201ENSMUST00000023241 906 ntAPPRIS ALT1 TSL 2 BASIC15.22■□□□□ 0.03
Trav6-4A0A075B6B4 Gm27045-201ENSMUST00000182145 1402 ntBASIC15.22■□□□□ 0.03
Trav6-4A0A075B6B4 Arhgdia-202ENSMUST00000106197 1867 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Trav6-4A0A075B6B4 Xylt1-201ENSMUST00000032892 9020 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Trav6-4A0A075B6B4 Abhd13-202ENSMUST00000139793 5191 ntAPPRIS P1 TSL 2 BASIC15.22■□□□□ 0.03
Trav6-4A0A075B6B4 Bfsp1-201ENSMUST00000028907 2372 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
Trav6-4A0A075B6B4 Fgfrl1-202ENSMUST00000112560 2318 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Trav6-4A0A075B6B4 Syt6-205ENSMUST00000121834 1710 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Trav6-4A0A075B6B4 Irx5-202ENSMUST00000210246 2550 ntTSL 5 BASIC15.21■□□□□ 0.03
Trav6-4A0A075B6B4 Gnas-205ENSMUST00000109083 730 ntTSL 2 BASIC15.21■□□□□ 0.03
Trav6-4A0A075B6B4 Gm6569-201ENSMUST00000154520 811 ntAPPRIS P1 TSL 3 BASIC15.21■□□□□ 0.03
Trav6-4A0A075B6B4 1700064M15Rik-201ENSMUST00000185726 645 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Trav6-4A0A075B6B4 Gm5576-201ENSMUST00000075809 1236 ntBASIC15.21■□□□□ 0.03
Trav6-4A0A075B6B4 Pdcd2-205ENSMUST00000154293 1924 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
Trav6-4A0A075B6B4 Fmnl2-201ENSMUST00000049483 5461 ntTSL 5 BASIC15.21■□□□□ 0.02
Trav6-4A0A075B6B4 Slc35b2-201ENSMUST00000041353 2326 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
Trav6-4A0A075B6B4 Dedd-204ENSMUST00000111300 2563 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
Trav6-4A0A075B6B4 Ptpre-202ENSMUST00000209256 2593 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
Trav6-4A0A075B6B4 Dbnl-201ENSMUST00000020769 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.02
Trav6-4A0A075B6B4 Rhov-201ENSMUST00000037360 1703 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Trav6-4A0A075B6B4 Fdxacb1-203ENSMUST00000176335 1817 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Trav6-4A0A075B6B4 B630019K06Rik-201ENSMUST00000064196 2583 ntAPPRIS P1 BASIC15.2■□□□□ 0.02
Trav6-4A0A075B6B4 Gm12821-201ENSMUST00000120022 600 ntBASIC15.2■□□□□ 0.02
Trav6-4A0A075B6B4 Gm20548-204ENSMUST00000174528 791 ntTSL 3 BASIC15.2■□□□□ 0.02
Trav6-4A0A075B6B4 0610039K10Rik-202ENSMUST00000184724 952 ntBASIC15.2■□□□□ 0.02
Trav6-4A0A075B6B4 Snx16-203ENSMUST00000195822 1084 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Trav6-4A0A075B6B4 Spata33-201ENSMUST00000060133 491 ntAPPRIS P2 TSL 1 (best) BASIC15.2■□□□□ 0.02
Trav6-4A0A075B6B4 Proca1-201ENSMUST00000060539 960 ntAPPRIS ALT2 TSL 2 BASIC15.2■□□□□ 0.02
Trav6-4A0A075B6B4 Serpinh1-202ENSMUST00000169437 2274 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Trav6-4A0A075B6B4 Gm21964-202ENSMUST00000213641 1649 ntAPPRIS ALT2 TSL 5 BASIC15.2■□□□□ 0.02
Trav6-4A0A075B6B4 Ung-201ENSMUST00000031587 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
Trav6-4A0A075B6B4 Tial1-209ENSMUST00000141126 1344 ntTSL 5 BASIC15.19■□□□□ 0.02
Trav6-4A0A075B6B4 Ripply3-201ENSMUST00000023660 1531 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Trav6-4A0A075B6B4 Jkamp-202ENSMUST00000117449 1874 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
Trav6-4A0A075B6B4 Cacnb1-202ENSMUST00000092736 1880 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
Trav6-4A0A075B6B4 Cacnb1-203ENSMUST00000103144 2236 ntTSL 5 BASIC15.19■□□□□ 0.02
Trav6-4A0A075B6B4 Sec24b-201ENSMUST00000001079 5128 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Trav6-4A0A075B6B4 Gm7102-201ENSMUST00000180168 1624 ntAPPRIS P1 BASIC15.19■□□□□ 0.02
Trav6-4A0A075B6B4 Gm10941-201ENSMUST00000105408 708 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
Trav6-4A0A075B6B4 9530036O11Rik-201ENSMUST00000180878 876 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
Trav6-4A0A075B6B4 Cox5b-204ENSMUST00000193210 865 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Trav6-4A0A075B6B4 Whrn-204ENSMUST00000095037 2419 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
Trav6-4A0A075B6B4 Krt79-201ENSMUST00000023799 2097 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Trav6-4A0A075B6B4 Gmds-201ENSMUST00000041859 1713 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Trav6-4A0A075B6B4 Ksr1-202ENSMUST00000108264 2748 ntTSL 5 BASIC15.19■□□□□ 0.02
Trav6-4A0A075B6B4 Fam207a-201ENSMUST00000045454 2394 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Trav6-4A0A075B6B4 Selenoo-201ENSMUST00000082439 2383 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Trav6-4A0A075B6B4 Retreg2-201ENSMUST00000097694 2561 ntAPPRIS P3 TSL 1 (best) BASIC15.19■□□□□ 0.02
Trav6-4A0A075B6B4 Cpsf4-202ENSMUST00000160422 1756 ntAPPRIS ALT1 TSL 5 BASIC15.19■□□□□ 0.02
Trav6-4A0A075B6B4 Laptm4a-201ENSMUST00000020909 1773 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Trav6-4A0A075B6B4 Eif5a-210ENSMUST00000108613 1343 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Trav6-4A0A075B6B4 Ajap1-201ENSMUST00000105646 3048 ntAPPRIS P1 TSL 5 BASIC15.18■□□□□ 0.02
Trav6-4A0A075B6B4 K230010J24Rik-204ENSMUST00000187868 1810 ntAPPRIS P1 TSL 5 BASIC15.18■□□□□ 0.02
Trav6-4A0A075B6B4 Gm10382-201ENSMUST00000100700 1233 ntAPPRIS P1 BASIC15.18■□□□□ 0.02
Trav6-4A0A075B6B4 C1qtnf4-201ENSMUST00000111466 1290 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Trav6-4A0A075B6B4 H2-Q7-204ENSMUST00000116598 1134 ntTSL 5 BASIC15.18■□□□□ 0.02
Trav6-4A0A075B6B4 1700016H13Rik-203ENSMUST00000120108 797 ntAPPRIS P1 TSL 2 BASIC15.18■□□□□ 0.02
Trav6-4A0A075B6B4 Ubxn1-202ENSMUST00000166407 1032 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Trav6-4A0A075B6B4 Tusc3-202ENSMUST00000169034 1262 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
Trav6-4A0A075B6B4 Rps2-ps10-202ENSMUST00000170335 965 ntBASIC15.18■□□□□ 0.02
Trav6-4A0A075B6B4 Tmem196-202ENSMUST00000183694 845 ntTSL 3 BASIC15.18■□□□□ 0.02
Trav6-4A0A075B6B4 Gm43137-201ENSMUST00000198052 594 ntBASIC15.18■□□□□ 0.02
Trav6-4A0A075B6B4 Appbp2os-202ENSMUST00000206972 447 ntBASIC15.18■□□□□ 0.02
Trav6-4A0A075B6B4 Fam117b-201ENSMUST00000036540 5532 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Trav6-4A0A075B6B4 Skor2-201ENSMUST00000166956 3141 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Retrieved 100 of 76,532 protein–RNA pairs in 19.1 ms