Protein–RNA interactions for Protein: P09027

Hoxd3, Homeobox protein Hox-D3, mousemouse

Predictions only

Length 433 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hoxd3P09027 Ccl27a-204ENSMUST00000108035 731 ntAPPRIS ALT2 TSL 1 (best) BASIC8.58□□□□□ -1.04
Hoxd3P09027 Ccl27a-205ENSMUST00000108036 841 ntAPPRIS ALT2 TSL 2 BASIC8.58□□□□□ -1.04
Hoxd3P09027 Gm12463-201ENSMUST00000118271 849 ntBASIC8.58□□□□□ -1.04
Hoxd3P09027 Gm6322-201ENSMUST00000118789 1004 ntBASIC8.58□□□□□ -1.04
Hoxd3P09027 Gm12986-201ENSMUST00000119037 967 ntBASIC8.58□□□□□ -1.04
Hoxd3P09027 Olfr1069-ps1-201ENSMUST00000120755 965 ntBASIC8.58□□□□□ -1.04
Hoxd3P09027 Sycp3-203ENSMUST00000125612 1169 ntAPPRIS ALT2 TSL 1 (best) BASIC8.58□□□□□ -1.04
Hoxd3P09027 Gm25343-201ENSMUST00000157460 107 ntBASIC8.58□□□□□ -1.04
Hoxd3P09027 Gm4982-201ENSMUST00000160440 1098 ntBASIC8.58□□□□□ -1.04
Hoxd3P09027 Gm17546-201ENSMUST00000168960 733 ntTSL 1 (best) BASIC8.58□□□□□ -1.04
Hoxd3P09027 Snord55-201ENSMUST00000174939 79 ntBASIC8.58□□□□□ -1.04
Hoxd3P09027 Ly6l-201ENSMUST00000177479 430 ntAPPRIS P1 TSL 5 BASIC8.58□□□□□ -1.04
Hoxd3P09027 9330179D12Rik-201ENSMUST00000180569 1105 ntTSL 1 (best) BASIC8.58□□□□□ -1.04
Hoxd3P09027 Gm7135-201ENSMUST00000187538 675 ntTSL 3 BASIC8.58□□□□□ -1.04
Hoxd3P09027 Gm2447-201ENSMUST00000191954 544 ntTSL 1 (best) BASIC8.58□□□□□ -1.04
Hoxd3P09027 Gm37708-201ENSMUST00000192337 895 ntBASIC8.58□□□□□ -1.04
Hoxd3P09027 C630004L07Rik-201ENSMUST00000193236 1275 ntBASIC8.58□□□□□ -1.04
Hoxd3P09027 4930557B06Rik-201ENSMUST00000200193 381 ntBASIC8.58□□□□□ -1.04
Hoxd3P09027 1700102F20Rik-201ENSMUST00000203859 670 ntBASIC8.58□□□□□ -1.04
Hoxd3P09027 Gm6423-201ENSMUST00000204315 934 ntBASIC8.58□□□□□ -1.04
Hoxd3P09027 Cldnd2-202ENSMUST00000206839 583 ntAPPRIS P1 TSL 2 BASIC8.58□□□□□ -1.04
Hoxd3P09027 4930431P19Rik-202ENSMUST00000207761 2959 ntBASIC8.58□□□□□ -1.04
Hoxd3P09027 Gm39078-201ENSMUST00000207973 704 ntTSL 5 BASIC8.58□□□□□ -1.04
Hoxd3P09027 Olfr697-202ENSMUST00000217734 1190 ntAPPRIS P1 TSL 5 BASIC8.58□□□□□ -1.04
Hoxd3P09027 Olfr692-202ENSMUST00000217827 1126 ntBASIC8.58□□□□□ -1.04
Hoxd3P09027 AC159376.1-201ENSMUST00000218504 630 ntBASIC8.58□□□□□ -1.04
Hoxd3P09027 AC123694.1-201ENSMUST00000219525 644 ntTSL 5 BASIC8.58□□□□□ -1.04
Hoxd3P09027 AC109214.2-201ENSMUST00000220089 358 ntBASIC8.58□□□□□ -1.04
Hoxd3P09027 AC154461.4-201ENSMUST00000224878 468 ntBASIC8.58□□□□□ -1.04
Hoxd3P09027 Higd2a-201ENSMUST00000026986 648 ntAPPRIS P1 TSL 1 (best) BASIC8.58□□□□□ -1.04
Hoxd3P09027 Olfr71-201ENSMUST00000055401 939 ntAPPRIS P1 BASIC8.58□□□□□ -1.04
Hoxd3P09027 Gm5142-201ENSMUST00000066558 626 ntAPPRIS P1 TSL 1 (best) BASIC8.58□□□□□ -1.04
Hoxd3P09027 Tdpoz3-201ENSMUST00000081780 1098 ntAPPRIS P1 BASIC8.58□□□□□ -1.04
Hoxd3P09027 Gm25580-201ENSMUST00000083409 327 ntBASIC8.58□□□□□ -1.04
Hoxd3P09027 Gm10334-201ENSMUST00000095999 876 ntAPPRIS P1 TSL 1 (best) BASIC8.58□□□□□ -1.04
Hoxd3P09027 Olfr692-201ENSMUST00000098152 1126 ntAPPRIS P1 BASIC8.58□□□□□ -1.04
Hoxd3P09027 Hvcn1-202ENSMUST00000100747 2805 ntAPPRIS P1 TSL 1 (best) BASIC8.58□□□□□ -1.04
Hoxd3P09027 Tns3-201ENSMUST00000020695 7483 ntAPPRIS P1 TSL 5 BASIC8.58□□□□□ -1.04
Hoxd3P09027 AC155245.1-201ENSMUST00000222266 1804 ntBASIC8.58□□□□□ -1.04
Hoxd3P09027 Edil3-202ENSMUST00000081769 5317 ntAPPRIS P1 TSL 1 (best) BASIC8.58□□□□□ -1.04
Hoxd3P09027 Dglucy-202ENSMUST00000110069 3058 ntAPPRIS P2 TSL 1 (best) BASIC8.58□□□□□ -1.04
Hoxd3P09027 Atp6v1h-205ENSMUST00000192847 1662 ntTSL 5 BASIC8.58□□□□□ -1.04
Hoxd3P09027 Bcat2-208ENSMUST00000211173 1684 ntTSL 1 (best) BASIC8.58□□□□□ -1.04
Hoxd3P09027 Gm33677-201ENSMUST00000220074 2765 ntTSL 1 (best) BASIC8.58□□□□□ -1.04
Hoxd3P09027 Slc25a12-206ENSMUST00000151937 6351 ntAPPRIS P1 TSL 1 (best) BASIC8.58□□□□□ -1.04
Hoxd3P09027 Hars2-206ENSMUST00000152954 3336 ntAPPRIS P1 TSL 1 (best) BASIC8.58□□□□□ -1.04
Hoxd3P09027 Scn8a-203ENSMUST00000108908 7030 ntAPPRIS ALT1 TSL 5 BASIC8.58□□□□□ -1.04
Hoxd3P09027 Gm21761-202ENSMUST00000187530 1374 ntAPPRIS P1 TSL 1 (best) BASIC8.58□□□□□ -1.04
Hoxd3P09027 Iqce-201ENSMUST00000041783 6037 ntAPPRIS P3 TSL 1 (best) BASIC8.58□□□□□ -1.04
Hoxd3P09027 Kat6b-204ENSMUST00000182405 6977 ntAPPRIS P2 TSL 1 (best) BASIC8.58□□□□□ -1.04
Hoxd3P09027 Gpatch2l-204ENSMUST00000221368 4355 ntAPPRIS P2 TSL 1 (best) BASIC8.58□□□□□ -1.04
Hoxd3P09027 Zfp85os-202ENSMUST00000143812 1784 ntTSL 1 (best) BASIC8.58□□□□□ -1.04
Hoxd3P09027 Knop1-206ENSMUST00000126792 3253 ntAPPRIS ALT2 TSL 1 (best) BASIC8.58□□□□□ -1.04
Hoxd3P09027 Pigc-201ENSMUST00000028021 2196 ntAPPRIS P1 TSL 1 (best) BASIC8.58□□□□□ -1.04
Hoxd3P09027 Gm13135-201ENSMUST00000117628 3121 ntBASIC8.58□□□□□ -1.04
Hoxd3P09027 Lpar1-203ENSMUST00000107571 3543 ntAPPRIS P3 TSL 5 BASIC8.58□□□□□ -1.04
Hoxd3P09027 Ttll10-206ENSMUST00000184348 2556 ntAPPRIS ALT2 TSL 5 BASIC8.58□□□□□ -1.04
Hoxd3P09027 Mindy1-201ENSMUST00000039537 2800 ntTSL 1 (best) BASIC8.58□□□□□ -1.04
Hoxd3P09027 Trim9-202ENSMUST00000110522 4405 ntTSL 1 (best) BASIC8.57□□□□□ -1.04
Hoxd3P09027 Gm3294-201ENSMUST00000164104 7367 ntTSL 3 BASIC8.57□□□□□ -1.04
Hoxd3P09027 Gm28971-201ENSMUST00000187506 1498 ntTSL 5 BASIC8.57□□□□□ -1.04
Hoxd3P09027 Gm28152-201ENSMUST00000188694 1498 ntTSL 5 BASIC8.57□□□□□ -1.04
Hoxd3P09027 Gm12248-202ENSMUST00000218429 1462 ntAPPRIS ALT2 TSL 5 BASIC8.57□□□□□ -1.04
Hoxd3P09027 Plin2-201ENSMUST00000000466 1888 ntAPPRIS P1 TSL 1 (best) BASIC8.57□□□□□ -1.04
Hoxd3P09027 Dclre1b-203ENSMUST00000106832 2299 ntTSL 1 (best) BASIC8.57□□□□□ -1.04
Hoxd3P09027 Kalrn-206ENSMUST00000114954 4677 ntTSL 1 (best) BASIC8.57□□□□□ -1.04
Hoxd3P09027 Sox9-201ENSMUST00000000579 4135 ntAPPRIS P1 TSL 1 (best) BASIC8.57□□□□□ -1.04
Hoxd3P09027 Acacb-202ENSMUST00000102582 8788 ntAPPRIS P1 TSL 5 BASIC8.57□□□□□ -1.04
Hoxd3P09027 Acsl1-202ENSMUST00000110371 2100 ntTSL 5 BASIC8.57□□□□□ -1.04
Hoxd3P09027 Prl3a1-201ENSMUST00000049463 1342 ntAPPRIS P1 TSL 1 (best) BASIC8.57□□□□□ -1.04
Hoxd3P09027 Son-204ENSMUST00000119368 7529 ntTSL 5 BASIC8.57□□□□□ -1.04
Hoxd3P09027 Inpp4a-203ENSMUST00000114933 3004 ntTSL 1 (best) BASIC8.57□□□□□ -1.04
Hoxd3P09027 Uba1-201ENSMUST00000001989 4071 ntAPPRIS P1 TSL 1 (best) BASIC8.57□□□□□ -1.04
Hoxd3P09027 Nwd1-201ENSMUST00000093427 7840 ntTSL 5 BASIC8.57□□□□□ -1.04
Hoxd3P09027 1700036A12Rik-202ENSMUST00000190053 1828 ntTSL 1 (best) BASIC8.57□□□□□ -1.04
Hoxd3P09027 Col5a2-201ENSMUST00000086430 6625 ntAPPRIS P1 TSL 1 (best) BASIC8.57□□□□□ -1.04
Hoxd3P09027 Gm18594-201ENSMUST00000175733 1403 ntBASIC8.57□□□□□ -1.04
Hoxd3P09027 Meikin-201ENSMUST00000094193 1433 ntAPPRIS P1 TSL 1 (best) BASIC8.57□□□□□ -1.04
Hoxd3P09027 Tfr2-206ENSMUST00000198783 2973 ntAPPRIS P1 TSL 1 (best) BASIC8.57□□□□□ -1.04
Hoxd3P09027 Gtf2ird2-201ENSMUST00000016086 3482 ntAPPRIS P1 TSL 1 (best) BASIC8.57□□□□□ -1.04
Hoxd3P09027 Cit-212ENSMUST00000141101 6794 ntTSL 5 BASIC8.57□□□□□ -1.04
Hoxd3P09027 Oprl1-204ENSMUST00000108767 1248 ntAPPRIS P3 TSL 1 (best) BASIC8.57□□□□□ -1.04
Hoxd3P09027 Crygc-202ENSMUST00000114064 612 ntAPPRIS ALT1 TSL 1 (best) BASIC8.57□□□□□ -1.04
Hoxd3P09027 Camk2a-205ENSMUST00000115297 499 ntTSL 2 BASIC8.57□□□□□ -1.04
Hoxd3P09027 Mageb8-ps-201ENSMUST00000117228 1033 ntBASIC8.57□□□□□ -1.04
Hoxd3P09027 Gm12179-201ENSMUST00000118344 1272 ntBASIC8.57□□□□□ -1.04
Hoxd3P09027 Anxa8-202ENSMUST00000120077 1208 ntTSL 1 (best) BASIC8.57□□□□□ -1.04
Hoxd3P09027 Gm6806-201ENSMUST00000120092 1006 ntBASIC8.57□□□□□ -1.04
Hoxd3P09027 Gm22275-201ENSMUST00000122470 310 ntBASIC8.57□□□□□ -1.04
Hoxd3P09027 Srrm3os-201ENSMUST00000131896 1271 ntTSL 1 (best) BASIC8.57□□□□□ -1.04
Hoxd3P09027 2210414B05Rik-201ENSMUST00000139600 872 ntTSL 1 (best) BASIC8.57□□□□□ -1.04
Hoxd3P09027 Tctex1d1-205ENSMUST00000140654 891 ntAPPRIS ALT2 TSL 2 BASIC8.57□□□□□ -1.04
Hoxd3P09027 Gm11417-201ENSMUST00000150536 920 ntTSL 2 BASIC8.57□□□□□ -1.04
Hoxd3P09027 Gm12472-201ENSMUST00000153232 1140 ntTSL 1 (best) BASIC8.57□□□□□ -1.04
Hoxd3P09027 Prr13-202ENSMUST00000164688 1020 ntAPPRIS P1 TSL 1 (best) BASIC8.57□□□□□ -1.04
Hoxd3P09027 Gm6205-201ENSMUST00000165424 1080 ntAPPRIS P1 TSL 5 BASIC8.57□□□□□ -1.04
Hoxd3P09027 Gm17042-201ENSMUST00000167075 1216 ntBASIC8.57□□□□□ -1.04
Hoxd3P09027 Gm3233-201ENSMUST00000168997 693 ntAPPRIS P1 BASIC8.57□□□□□ -1.04
Hoxd3P09027 Gm17192-201ENSMUST00000169031 511 ntBASIC8.57□□□□□ -1.04
Hoxd3P09027 Gm5930-202ENSMUST00000178002 489 ntTSL 5 BASIC8.57□□□□□ -1.04
Retrieved 100 of 76,532 protein–RNA pairs in 37.1 ms