Protein–RNA interactions for Protein: P39428

Traf1, TNF receptor-associated factor 1, mousemouse

Predictions only

Length 409 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Traf1P39428 Atp1a3-205ENSMUST00000196684 3642 ntTSL 5 BASIC12.23□□□□□ -0.45
Traf1P39428 Prss57-201ENSMUST00000020573 2693 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Traf1P39428 Arhgap15os-201ENSMUST00000139948 1761 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Traf1P39428 Gm12530-201ENSMUST00000152074 1759 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Traf1P39428 Triobp-204ENSMUST00000109690 7023 ntAPPRIS P4 TSL 1 (best) BASIC12.23□□□□□ -0.45
Traf1P39428 Bckdk-207ENSMUST00000206745 1702 ntTSL 5 BASIC12.23□□□□□ -0.45
Traf1P39428 Kat6b-201ENSMUST00000069648 7649 ntAPPRIS ALT2 TSL 5 BASIC12.23□□□□□ -0.45
Traf1P39428 Slc10a1-201ENSMUST00000095572 1674 ntAPPRIS P2 TSL 1 (best) BASIC12.22□□□□□ -0.45
Traf1P39428 Immt-206ENSMUST00000166975 2469 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
Traf1P39428 Cfap54-201ENSMUST00000020200 2473 ntAPPRIS ALT2 TSL 5 BASIC12.22□□□□□ -0.45
Traf1P39428 Cyp2j13-202ENSMUST00000097973 1648 ntTSL 5 BASIC12.22□□□□□ -0.45
Traf1P39428 Celf3-215ENSMUST00000200342 3173 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
Traf1P39428 Pcdh18-201ENSMUST00000035931 5168 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Traf1P39428 Papln-202ENSMUST00000121733 4373 ntAPPRIS ALT2 TSL 1 (best) BASIC12.22□□□□□ -0.45
Traf1P39428 Ms4a7-203ENSMUST00000067532 1334 ntAPPRIS P3 TSL 1 (best) BASIC12.22□□□□□ -0.45
Traf1P39428 Gm5395-201ENSMUST00000121650 915 ntBASIC12.22□□□□□ -0.45
Traf1P39428 4930533B01Rik-201ENSMUST00000123377 1029 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
Traf1P39428 Gm9574-201ENSMUST00000173127 845 ntBASIC12.22□□□□□ -0.45
Traf1P39428 Gm7928-201ENSMUST00000181249 701 ntBASIC12.22□□□□□ -0.45
Traf1P39428 Gm7069-201ENSMUST00000182418 1008 ntBASIC12.22□□□□□ -0.45
Traf1P39428 Zcwpw2-203ENSMUST00000187803 372 ntBASIC12.22□□□□□ -0.45
Traf1P39428 Gm5254-201ENSMUST00000188353 977 ntBASIC12.22□□□□□ -0.45
Traf1P39428 1700012J22Rik-201ENSMUST00000193492 830 ntBASIC12.22□□□□□ -0.45
Traf1P39428 Ccdc114-205ENSMUST00000211367 1078 ntAPPRIS ALT2 TSL 1 (best) BASIC12.22□□□□□ -0.45
Traf1P39428 CT030035.1-201ENSMUST00000223964 935 ntBASIC12.22□□□□□ -0.45
Traf1P39428 CT025603.1-201ENSMUST00000224040 448 ntBASIC12.22□□□□□ -0.45
Traf1P39428 Bloc1s1-201ENSMUST00000026405 550 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Traf1P39428 Rab7-201ENSMUST00000095048 1275 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Traf1P39428 Sh3d21-201ENSMUST00000094760 1859 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
Traf1P39428 Ncdn-201ENSMUST00000030637 3681 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Traf1P39428 Inpp4a-202ENSMUST00000058307 2963 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
Traf1P39428 Asb6-201ENSMUST00000041726 4147 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Traf1P39428 Il6st-201ENSMUST00000070731 5207 ntAPPRIS P2 TSL 5 BASIC12.22□□□□□ -0.45
Traf1P39428 AC131081.1-201ENSMUST00000219535 1736 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
Traf1P39428 Mfap3l-204ENSMUST00000161702 2215 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Traf1P39428 Pde4c-202ENSMUST00000110095 3290 ntAPPRIS P2 TSL 1 (best) BASIC12.22□□□□□ -0.45
Traf1P39428 Nod1-201ENSMUST00000060655 4315 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Traf1P39428 4930566F21Rik-201ENSMUST00000201177 1535 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
Traf1P39428 Rbfox2-203ENSMUST00000166610 6573 ntAPPRIS P2 TSL 1 (best) BASIC12.21□□□□□ -0.45
Traf1P39428 Olfr478-202ENSMUST00000210173 2477 ntAPPRIS P1 TSL 3 BASIC12.21□□□□□ -0.45
Traf1P39428 Arfgap3-202ENSMUST00000226124 2461 ntAPPRIS ALT2 BASIC12.21□□□□□ -0.45
Traf1P39428 Gm13169-201ENSMUST00000122090 1459 ntBASIC12.21□□□□□ -0.45
Traf1P39428 Olfr272-202ENSMUST00000107667 1936 ntAPPRIS P1 TSL 3 BASIC12.21□□□□□ -0.45
Traf1P39428 Poc1a-209ENSMUST00000216228 1431 ntTSL 5 BASIC12.21□□□□□ -0.45
Traf1P39428 Gm42602-201ENSMUST00000200288 3224 ntBASIC12.21□□□□□ -0.45
Traf1P39428 Gm44745-201ENSMUST00000206563 2723 ntBASIC12.21□□□□□ -0.45
Traf1P39428 Ifit1bl1-202ENSMUST00000168254 2215 ntAPPRIS ALT2 TSL 2 BASIC12.21□□□□□ -0.45
Traf1P39428 Gm26586-201ENSMUST00000181918 1745 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
Traf1P39428 Gm12799-201ENSMUST00000118151 2560 ntBASIC12.21□□□□□ -0.45
Traf1P39428 Vrtn-203ENSMUST00000167227 3440 ntAPPRIS P1 TSL 3 BASIC12.21□□□□□ -0.45
Traf1P39428 Psmb3-201ENSMUST00000103147 766 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Traf1P39428 Gm24279-201ENSMUST00000104236 131 ntBASIC12.21□□□□□ -0.45
Traf1P39428 Msrb1-202ENSMUST00000115262 886 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Traf1P39428 Ywhaq-ps3-201ENSMUST00000120944 738 ntBASIC12.21□□□□□ -0.45
Traf1P39428 Gm16178-201ENSMUST00000129408 677 ntTSL 2 BASIC12.21□□□□□ -0.45
Traf1P39428 Gm5860-201ENSMUST00000137810 1028 ntTSL 2 BASIC12.21□□□□□ -0.45
Traf1P39428 Ntng1-211ENSMUST00000156177 4652 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
Traf1P39428 Gm3115-202ENSMUST00000177660 618 ntAPPRIS ALT2 TSL 5 BASIC12.21□□□□□ -0.45
Traf1P39428 Gm6337-203ENSMUST00000177662 618 ntAPPRIS ALT2 TSL 5 BASIC12.21□□□□□ -0.45
Traf1P39428 Gm3727-202ENSMUST00000178251 618 ntAPPRIS ALT2 TSL 5 BASIC12.21□□□□□ -0.45
Traf1P39428 Gm4812-201ENSMUST00000182847 993 ntBASIC12.21□□□□□ -0.45
Traf1P39428 Pcdh7-207ENSMUST00000199310 659 ntTSL 2 BASIC12.21□□□□□ -0.45
Traf1P39428 5830411K02Rik-201ENSMUST00000200000 997 ntBASIC12.21□□□□□ -0.45
Traf1P39428 Gm44304-201ENSMUST00000200509 145 ntBASIC12.21□□□□□ -0.45
Traf1P39428 E230034D01Rik-201ENSMUST00000214440 1212 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
Traf1P39428 CT010505.2-201ENSMUST00000227918 998 ntBASIC12.21□□□□□ -0.45
Traf1P39428 Dmtf1-201ENSMUST00000071921 3806 ntAPPRIS P2 TSL 1 (best) BASIC12.21□□□□□ -0.45
Traf1P39428 Gphb5-201ENSMUST00000051079 1612 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
Traf1P39428 Myh1-201ENSMUST00000018637 5938 ntAPPRIS P1 TSL 5 BASIC12.21□□□□□ -0.46
Traf1P39428 Ccr6-202ENSMUST00000164411 1553 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
Traf1P39428 Zfp830-201ENSMUST00000056677 1591 ntAPPRIS P1 BASIC12.21□□□□□ -0.46
Traf1P39428 Pik3cd-202ENSMUST00000105688 4335 ntAPPRIS ALT1 TSL 1 (best) BASIC12.21□□□□□ -0.46
Traf1P39428 Slc45a4-202ENSMUST00000076224 4240 ntAPPRIS P2 TSL 1 (best) BASIC12.21□□□□□ -0.46
Traf1P39428 Ap5s1-203ENSMUST00000110208 1521 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
Traf1P39428 D930048N14Rik-202ENSMUST00000117859 3410 ntAPPRIS ALT2 TSL 1 (best) BASIC12.21□□□□□ -0.46
Traf1P39428 Phactr1-213ENSMUST00000148891 5307 ntTSL 1 (best) BASIC12.21□□□□□ -0.46
Traf1P39428 Fam78b-202ENSMUST00000126198 2951 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
Traf1P39428 Scn10a-202ENSMUST00000213392 6692 ntAPPRIS ALT2 TSL 1 (best) BASIC12.21□□□□□ -0.46
Traf1P39428 Prrg3-201ENSMUST00000048790 5931 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
Traf1P39428 Txnrd1-201ENSMUST00000020484 3325 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
Traf1P39428 1700018A04Rik-204ENSMUST00000221561 2569 ntTSL 1 (best) BASIC12.21□□□□□ -0.46
Traf1P39428 Itgal-205ENSMUST00000170971 3662 ntAPPRIS ALT2 TSL 5 BASIC12.21□□□□□ -0.46
Traf1P39428 Ehmt1-203ENSMUST00000102938 4680 ntAPPRIS ALT2 TSL 1 (best) BASIC12.2□□□□□ -0.46
Traf1P39428 Kcnab2-207ENSMUST00000160884 3922 ntAPPRIS P3 TSL 1 (best) BASIC12.2□□□□□ -0.46
Traf1P39428 Raver1-201ENSMUST00000115487 3470 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Traf1P39428 Uhrf1-202ENSMUST00000113035 3402 ntAPPRIS ALT2 TSL 1 (best) BASIC12.2□□□□□ -0.46
Traf1P39428 Mier1-204ENSMUST00000106857 4752 ntAPPRIS ALT2 TSL 1 (best) BASIC12.2□□□□□ -0.46
Traf1P39428 Slc9a8-202ENSMUST00000073873 4429 ntAPPRIS ALT2 TSL 5 BASIC12.2□□□□□ -0.46
Traf1P39428 Bcl9l-203ENSMUST00000218183 6771 ntAPPRIS P2 TSL 5 BASIC12.2□□□□□ -0.46
Traf1P39428 Cutal-203ENSMUST00000113068 2278 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Traf1P39428 4930432L08Rik-201ENSMUST00000132154 1608 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
Traf1P39428 Odf2l-202ENSMUST00000098538 2564 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
Traf1P39428 Gm5909-201ENSMUST00000119768 1281 ntBASIC12.2□□□□□ -0.46
Traf1P39428 Gm11544-201ENSMUST00000120215 382 ntBASIC12.2□□□□□ -0.46
Traf1P39428 Gm17231-201ENSMUST00000163186 645 ntTSL 3 BASIC12.2□□□□□ -0.46
Traf1P39428 Ppy-202ENSMUST00000170554 487 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Traf1P39428 Tcstv1-201ENSMUST00000178510 1280 ntAPPRIS P1 BASIC12.2□□□□□ -0.46
Traf1P39428 Gm29200-201ENSMUST00000188118 1085 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
Traf1P39428 Gm45893-201ENSMUST00000211899 247 ntBASIC12.2□□□□□ -0.46
Traf1P39428 Gm6331-201ENSMUST00000217890 450 ntBASIC12.2□□□□□ -0.46
Retrieved 100 of 76,532 protein–RNA pairs in 247.6 ms