Protein–RNA interactions for Protein: Q9CQ56

Use1, Vesicle transport protein USE1, mousemouse

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Use1Q9CQ56 Dydc1-203ENSMUST00000189865 995 ntAPPRIS P2 TSL 1 (best) BASIC9.95□□□□□ -0.82
Use1Q9CQ56 Tcstv1-202ENSMUST00000190512 875 ntAPPRIS P1 TSL 1 (best) BASIC9.95□□□□□ -0.82
Use1Q9CQ56 Gm44814-201ENSMUST00000207018 434 ntBASIC9.95□□□□□ -0.82
Use1Q9CQ56 AC153505.1-201ENSMUST00000218819 1071 ntBASIC9.95□□□□□ -0.82
Use1Q9CQ56 Gm18974-201ENSMUST00000221478 1031 ntBASIC9.95□□□□□ -0.82
Use1Q9CQ56 CT030166.5-201ENSMUST00000222249 420 ntBASIC9.95□□□□□ -0.82
Use1Q9CQ56 Mettl6-204ENSMUST00000227595 1027 ntBASIC9.95□□□□□ -0.82
Use1Q9CQ56 Nmi-201ENSMUST00000028314 1291 ntAPPRIS P1 TSL 1 (best) BASIC9.95□□□□□ -0.82
Use1Q9CQ56 Tmem210-201ENSMUST00000028340 516 ntAPPRIS P1 TSL 1 (best) BASIC9.95□□□□□ -0.82
Use1Q9CQ56 Lsm8-201ENSMUST00000056398 807 ntAPPRIS P1 TSL 1 (best) BASIC9.95□□□□□ -0.82
Use1Q9CQ56 Olfr963-201ENSMUST00000073433 936 ntAPPRIS P1 BASIC9.95□□□□□ -0.82
Use1Q9CQ56 H2-M9-202ENSMUST00000087167 1070 ntAPPRIS P1 TSL 1 (best) BASIC9.95□□□□□ -0.82
Use1Q9CQ56 Mrps23-201ENSMUST00000024486 1332 ntAPPRIS P1 TSL 1 (best) BASIC9.95□□□□□ -0.82
Use1Q9CQ56 Gm17213-201ENSMUST00000165161 1360 ntBASIC9.95□□□□□ -0.82
Use1Q9CQ56 Mymk-201ENSMUST00000009358 1382 ntAPPRIS P1 TSL 1 (best) BASIC9.95□□□□□ -0.82
Use1Q9CQ56 Anxa3-205ENSMUST00000198631 1523 ntTSL 1 (best) BASIC9.95□□□□□ -0.82
Use1Q9CQ56 Csf2rb2-201ENSMUST00000096356 4612 ntAPPRIS P1 TSL 1 (best) BASIC9.95□□□□□ -0.82
Use1Q9CQ56 Gm28635-201ENSMUST00000189772 4734 ntAPPRIS P1 TSL 5 BASIC9.95□□□□□ -0.82
Use1Q9CQ56 Map2-206ENSMUST00000114017 4981 ntAPPRIS P3 TSL 1 (best) BASIC9.95□□□□□ -0.82
Use1Q9CQ56 Kif13b-203ENSMUST00000224503 8865 ntAPPRIS ALT2 BASIC9.95□□□□□ -0.82
Use1Q9CQ56 Cped1-201ENSMUST00000115382 2002 ntAPPRIS ALT2 TSL 5 BASIC9.95□□□□□ -0.82
Use1Q9CQ56 Slc22a14-204ENSMUST00000170400 2110 ntAPPRIS P1 TSL 5 BASIC9.95□□□□□ -0.82
Use1Q9CQ56 Foxm1-202ENSMUST00000112148 2229 ntAPPRIS ALT2 TSL 5 BASIC9.95□□□□□ -0.82
Use1Q9CQ56 Cdkal1-202ENSMUST00000091674 2427 ntTSL 1 (best) BASIC9.95□□□□□ -0.82
Use1Q9CQ56 Gbp3-201ENSMUST00000029935 2681 ntAPPRIS P1 TSL 1 (best) BASIC9.95□□□□□ -0.82
Use1Q9CQ56 Kalrn-203ENSMUST00000114947 2922 ntTSL 5 BASIC9.95□□□□□ -0.82
Use1Q9CQ56 Picalm-201ENSMUST00000049537 3528 ntTSL 1 (best) BASIC9.95□□□□□ -0.82
Use1Q9CQ56 Dusp16-202ENSMUST00000129433 3993 ntAPPRIS ALT2 TSL 1 (best) BASIC9.95□□□□□ -0.82
Use1Q9CQ56 Bcl9-207ENSMUST00000166341 4652 ntAPPRIS P1 TSL 1 (best) BASIC9.95□□□□□ -0.82
Use1Q9CQ56 Ctnnd1-205ENSMUST00000111670 5047 ntTSL 1 (best) BASIC9.95□□□□□ -0.82
Use1Q9CQ56 Dnajc10-201ENSMUST00000028392 4042 ntAPPRIS P1 TSL 1 (best) BASIC9.94□□□□□ -0.82
Use1Q9CQ56 4932430I15Rik-201ENSMUST00000180431 3306 ntTSL 1 (best) BASIC9.94□□□□□ -0.82
Use1Q9CQ56 Ccdc15-202ENSMUST00000213633 3331 ntAPPRIS ALT2 TSL 5 BASIC9.94□□□□□ -0.82
Use1Q9CQ56 Gm17141-201ENSMUST00000167578 3148 ntTSL 1 (best) BASIC9.94□□□□□ -0.82
Use1Q9CQ56 Kcne4-201ENSMUST00000057262 2657 ntAPPRIS P1 TSL 1 (best) BASIC9.94□□□□□ -0.82
Use1Q9CQ56 Gm37567-201ENSMUST00000193241 2279 ntBASIC9.94□□□□□ -0.82
Use1Q9CQ56 Igsf6-201ENSMUST00000047194 2175 ntAPPRIS P1 TSL 1 (best) BASIC9.94□□□□□ -0.82
Use1Q9CQ56 Ppm1f-201ENSMUST00000027373 4922 ntAPPRIS P1 TSL 1 (best) BASIC9.94□□□□□ -0.82
Use1Q9CQ56 Ufsp2-201ENSMUST00000034051 1640 ntAPPRIS P1 TSL 1 (best) BASIC9.94□□□□□ -0.82
Use1Q9CQ56 Gm8016-201ENSMUST00000221830 1575 ntTSL 1 (best) BASIC9.94□□□□□ -0.82
Use1Q9CQ56 B4galt4-204ENSMUST00000114711 1481 ntTSL 1 (best) BASIC9.94□□□□□ -0.82
Use1Q9CQ56 Gm15604-201ENSMUST00000118350 1456 ntBASIC9.94□□□□□ -0.82
Use1Q9CQ56 Det1-202ENSMUST00000107431 1439 ntTSL 5 BASIC9.94□□□□□ -0.82
Use1Q9CQ56 Gm8122-201ENSMUST00000165988 1404 ntAPPRIS P1 TSL 5 BASIC9.94□□□□□ -0.82
Use1Q9CQ56 Gm44056-201ENSMUST00000204623 1427 ntBASIC9.94□□□□□ -0.82
Use1Q9CQ56 Arrb2-201ENSMUST00000079056 1443 ntTSL 1 (best) BASIC9.94□□□□□ -0.82
Use1Q9CQ56 Clasp2-203ENSMUST00000166734 4108 ntAPPRIS P3 TSL 5 BASIC9.94□□□□□ -0.82
Use1Q9CQ56 Plekhg5-201ENSMUST00000084115 4113 ntAPPRIS ALT2 TSL 2 BASIC9.94□□□□□ -0.82
Use1Q9CQ56 Pard3-201ENSMUST00000026921 4050 ntAPPRIS ALT2 TSL 1 (best) BASIC9.94□□□□□ -0.82
Use1Q9CQ56 Ddr1-203ENSMUST00000117301 3874 ntAPPRIS P3 TSL 1 (best) BASIC9.94□□□□□ -0.82
Use1Q9CQ56 Gm15285-201ENSMUST00000119271 473 ntBASIC9.94□□□□□ -0.82
Use1Q9CQ56 Mrps17-204ENSMUST00000119604 1208 ntAPPRIS P1 TSL 1 (best) BASIC9.94□□□□□ -0.82
Use1Q9CQ56 Smim1-204ENSMUST00000130175 477 ntAPPRIS P1 TSL 5 BASIC9.94□□□□□ -0.82
Use1Q9CQ56 Smim1-206ENSMUST00000132541 490 ntAPPRIS P1 TSL 3 BASIC9.94□□□□□ -0.82
Use1Q9CQ56 Gm4982-201ENSMUST00000160440 1098 ntBASIC9.94□□□□□ -0.82
Use1Q9CQ56 Gm20426-201ENSMUST00000173657 440 ntBASIC9.94□□□□□ -0.82
Use1Q9CQ56 Ly6c1-202ENSMUST00000179762 838 ntAPPRIS P3 TSL 1 (best) BASIC9.94□□□□□ -0.82
Use1Q9CQ56 Gm44696-201ENSMUST00000181943 1229 ntTSL 1 (best) BASIC9.94□□□□□ -0.82
Use1Q9CQ56 Gm19412-201ENSMUST00000185388 436 ntTSL 1 (best) BASIC9.94□□□□□ -0.82
Use1Q9CQ56 Gm38313-201ENSMUST00000191953 1266 ntBASIC9.94□□□□□ -0.82
Use1Q9CQ56 Gm17877-201ENSMUST00000192578 814 ntBASIC9.94□□□□□ -0.82
Use1Q9CQ56 Gm42816-201ENSMUST00000198433 325 ntBASIC9.94□□□□□ -0.82
Use1Q9CQ56 Bcl2l12-205ENSMUST00000207755 605 ntAPPRIS ALT2 TSL 2 BASIC9.94□□□□□ -0.82
Use1Q9CQ56 Gm44551-201ENSMUST00000208804 171 ntBASIC9.94□□□□□ -0.82
Use1Q9CQ56 Gm2875-201ENSMUST00000211333 360 ntBASIC9.94□□□□□ -0.82
Use1Q9CQ56 Gm30671-201ENSMUST00000214898 318 ntBASIC9.94□□□□□ -0.82
Use1Q9CQ56 Gm46328-201ENSMUST00000217924 976 ntTSL 5 BASIC9.94□□□□□ -0.82
Use1Q9CQ56 AC159376.1-201ENSMUST00000218504 630 ntBASIC9.94□□□□□ -0.82
Use1Q9CQ56 AC153512.3-201ENSMUST00000220426 662 ntTSL 3 BASIC9.94□□□□□ -0.82
Use1Q9CQ56 Crygb-201ENSMUST00000027090 634 ntAPPRIS P1 TSL 1 (best) BASIC9.94□□□□□ -0.82
Use1Q9CQ56 Olfr414-201ENSMUST00000053178 955 ntAPPRIS P1 BASIC9.94□□□□□ -0.82
Use1Q9CQ56 Olfr456-201ENSMUST00000057251 1052 ntAPPRIS P1 BASIC9.94□□□□□ -0.82
Use1Q9CQ56 Krtap4-2-201ENSMUST00000058987 974 ntAPPRIS P1 BASIC9.94□□□□□ -0.82
Use1Q9CQ56 Mlf1-201ENSMUST00000061322 1113 ntAPPRIS P4 TSL 1 (best) BASIC9.94□□□□□ -0.82
Use1Q9CQ56 Chmp3-202ENSMUST00000065364 998 ntAPPRIS P1 TSL 1 (best) BASIC9.94□□□□□ -0.82
Use1Q9CQ56 Sstr2-201ENSMUST00000067591 1041 ntTSL 2 BASIC9.94□□□□□ -0.82
Use1Q9CQ56 Tdpoz3-201ENSMUST00000081780 1098 ntAPPRIS P1 BASIC9.94□□□□□ -0.82
Use1Q9CQ56 Lst1-201ENSMUST00000097336 415 ntAPPRIS P1 TSL 1 (best) BASIC9.94□□□□□ -0.82
Use1Q9CQ56 Pif1-201ENSMUST00000047099 3685 ntAPPRIS P1 TSL 1 (best) BASIC9.94□□□□□ -0.82
Use1Q9CQ56 Clip3-201ENSMUST00000014065 3300 ntAPPRIS P1 TSL 1 (best) BASIC9.94□□□□□ -0.82
Use1Q9CQ56 A930003O13Rik-202ENSMUST00000197486 3098 ntBASIC9.94□□□□□ -0.82
Use1Q9CQ56 Slc19a1-208ENSMUST00000136925 2863 ntAPPRIS ALT2 TSL 1 (best) BASIC9.94□□□□□ -0.82
Use1Q9CQ56 Vamp5-203ENSMUST00000206154 2619 ntTSL 1 (best) BASIC9.94□□□□□ -0.82
Use1Q9CQ56 Gm21115-201ENSMUST00000187565 2578 ntBASIC9.94□□□□□ -0.82
Use1Q9CQ56 Gm37648-201ENSMUST00000192072 2563 ntBASIC9.94□□□□□ -0.82
Use1Q9CQ56 Trim34a-201ENSMUST00000060315 2590 ntAPPRIS P1 TSL 1 (best) BASIC9.94□□□□□ -0.82
Use1Q9CQ56 Tfdp1-204ENSMUST00000209885 2511 ntAPPRIS P3 TSL 1 (best) BASIC9.94□□□□□ -0.82
Use1Q9CQ56 Vipas39-202ENSMUST00000072744 2524 ntAPPRIS P1 TSL 1 (best) BASIC9.94□□□□□ -0.82
Use1Q9CQ56 Zfp775-203ENSMUST00000204095 4143 ntAPPRIS P1 TSL 2 BASIC9.94□□□□□ -0.82
Use1Q9CQ56 AC125351.1-201ENSMUST00000221438 2223 ntBASIC9.94□□□□□ -0.82
Use1Q9CQ56 Gm42833-201ENSMUST00000196019 2124 ntBASIC9.94□□□□□ -0.82
Use1Q9CQ56 Toe1-201ENSMUST00000030451 2090 ntAPPRIS P2 TSL 1 (best) BASIC9.94□□□□□ -0.82
Use1Q9CQ56 Bpifb9b-201ENSMUST00000088921 2067 ntAPPRIS P1 TSL 1 (best) BASIC9.94□□□□□ -0.82
Use1Q9CQ56 Ehmt1-205ENSMUST00000114432 4539 ntAPPRIS ALT2 TSL 5 BASIC9.94□□□□□ -0.82
Use1Q9CQ56 Tcn2-205ENSMUST00000109991 1943 ntAPPRIS P1 TSL 5 BASIC9.94□□□□□ -0.82
Use1Q9CQ56 Prnd-201ENSMUST00000110169 1918 ntAPPRIS P1 TSL 1 (best) BASIC9.94□□□□□ -0.82
Use1Q9CQ56 Gm7598-201ENSMUST00000130251 3123 ntTSL 1 (best) BASIC9.93□□□□□ -0.82
Use1Q9CQ56 Celsr3-201ENSMUST00000024238 11547 ntAPPRIS P2 TSL 1 (best) BASIC9.93□□□□□ -0.82
Use1Q9CQ56 Epn2-204ENSMUST00000108713 4207 ntAPPRIS ALT2 TSL 1 (best) BASIC9.93□□□□□ -0.82
Use1Q9CQ56 Atp6v0e2-201ENSMUST00000040361 1789 ntAPPRIS P1 TSL 1 (best) BASIC9.93□□□□□ -0.82
Retrieved 100 of 76,532 protein–RNA pairs in 52.2 ms