Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Dcaf12-201ENSMUST00000030145 3442 ntAPPRIS P1 TSL 1 (best) BASIC8.65□□□□□ -1.02
Hmgb3O54879 Ebf1-201ENSMUST00000081265 5981 ntAPPRIS P3 TSL 1 (best) BASIC8.65□□□□□ -1.02
Hmgb3O54879 Il18bp-202ENSMUST00000209368 2596 ntAPPRIS ALT2 TSL 1 (best) BASIC8.65□□□□□ -1.02
Hmgb3O54879 AC124561.1-202ENSMUST00000228652 1929 ntBASIC8.65□□□□□ -1.02
Hmgb3O54879 Rpl15-203ENSMUST00000100799 802 ntAPPRIS P1 TSL 2 BASIC8.65□□□□□ -1.02
Hmgb3O54879 Ighv5-9-201ENSMUST00000103448 418 ntAPPRIS P1 BASIC8.65□□□□□ -1.02
Hmgb3O54879 Gm4294-201ENSMUST00000105169 614 ntBASIC8.65□□□□□ -1.02
Hmgb3O54879 Anapc15-204ENSMUST00000106973 650 ntAPPRIS P1 TSL 2 BASIC8.65□□□□□ -1.02
Hmgb3O54879 Pafah1b3-202ENSMUST00000108410 689 ntTSL 3 BASIC8.65□□□□□ -1.02
Hmgb3O54879 Map2k7-205ENSMUST00000110996 1188 ntTSL 1 (best) BASIC8.65□□□□□ -1.02
Hmgb3O54879 Gm16066-201ENSMUST00000118575 1086 ntTSL 3 BASIC8.65□□□□□ -1.02
Hmgb3O54879 Tmem219-203ENSMUST00000120007 1087 ntTSL 1 (best) BASIC8.65□□□□□ -1.02
Hmgb3O54879 Gm12216-202ENSMUST00000120776 826 ntAPPRIS ALT2 TSL 2 BASIC8.65□□□□□ -1.02
Hmgb3O54879 G630018N14Rik-201ENSMUST00000135656 1231 ntTSL 1 (best) BASIC8.65□□□□□ -1.02
Hmgb3O54879 Commd6-203ENSMUST00000168587 519 ntAPPRIS ALT2 TSL 1 (best) BASIC8.65□□□□□ -1.02
Hmgb3O54879 Krtap16-3-201ENSMUST00000179707 601 ntAPPRIS P1 BASIC8.65□□□□□ -1.02
Hmgb3O54879 Mir7051-201ENSMUST00000184167 73 ntBASIC8.65□□□□□ -1.02
Hmgb3O54879 Gm38266-201ENSMUST00000194931 421 ntBASIC8.65□□□□□ -1.02
Hmgb3O54879 Gm43433-201ENSMUST00000196573 481 ntBASIC8.65□□□□□ -1.02
Hmgb3O54879 Gm19710-201ENSMUST00000200257 640 ntTSL 1 (best) BASIC8.65□□□□□ -1.02
Hmgb3O54879 Gm44974-201ENSMUST00000206387 1279 ntBASIC8.65□□□□□ -1.02
Hmgb3O54879 Gm18062-201ENSMUST00000208020 547 ntBASIC8.65□□□□□ -1.02
Hmgb3O54879 Gm18055-201ENSMUST00000208254 547 ntBASIC8.65□□□□□ -1.02
Hmgb3O54879 Gm40437-201ENSMUST00000222338 767 ntTSL 5 BASIC8.65□□□□□ -1.02
Hmgb3O54879 AC134860.1-201ENSMUST00000224867 660 ntBASIC8.65□□□□□ -1.02
Hmgb3O54879 Rsph9-201ENSMUST00000024762 966 ntAPPRIS P1 TSL 1 (best) BASIC8.65□□□□□ -1.02
Hmgb3O54879 Mea1-201ENSMUST00000002845 840 ntAPPRIS P1 TSL 1 (best) BASIC8.65□□□□□ -1.02
Hmgb3O54879 Azgp1-201ENSMUST00000035390 1297 ntAPPRIS P1 TSL 1 (best) BASIC8.65□□□□□ -1.02
Hmgb3O54879 Rpl15-201ENSMUST00000079419 883 ntAPPRIS P1 TSL 2 BASIC8.65□□□□□ -1.02
Hmgb3O54879 Gm10020-201ENSMUST00000081993 612 ntBASIC8.65□□□□□ -1.02
Hmgb3O54879 Phc1-203ENSMUST00000112600 3127 ntAPPRIS ALT2 TSL 1 (best) BASIC8.65□□□□□ -1.02
Hmgb3O54879 Srgap2-201ENSMUST00000097588 8026 ntAPPRIS P1 TSL 5 BASIC8.65□□□□□ -1.02
Hmgb3O54879 5330439K02Rik-201ENSMUST00000180953 2312 ntTSL 1 (best) BASIC8.65□□□□□ -1.03
Hmgb3O54879 Cd300a-202ENSMUST00000106582 4645 ntAPPRIS P3 TSL 1 (best) BASIC8.65□□□□□ -1.03
Hmgb3O54879 Vangl1-208ENSMUST00000168312 1740 ntTSL 1 (best) BASIC8.65□□□□□ -1.03
Hmgb3O54879 Akap6-202ENSMUST00000219786 4564 ntAPPRIS ALT2 TSL 1 (best) BASIC8.65□□□□□ -1.03
Hmgb3O54879 Bpifb1-202ENSMUST00000081816 1699 ntAPPRIS P1 TSL 1 (best) BASIC8.65□□□□□ -1.03
Hmgb3O54879 Copb1-201ENSMUST00000033012 3346 ntAPPRIS P1 TSL 1 (best) BASIC8.65□□□□□ -1.03
Hmgb3O54879 Dhx35-202ENSMUST00000109478 3284 ntAPPRIS P1 TSL 5 BASIC8.65□□□□□ -1.03
Hmgb3O54879 Hdac7-207ENSMUST00000120683 3701 ntTSL 1 (best) BASIC8.65□□□□□ -1.03
Hmgb3O54879 Car12-201ENSMUST00000071889 3716 ntAPPRIS P3 TSL 1 (best) BASIC8.65□□□□□ -1.03
Hmgb3O54879 4930478P22Rik-203ENSMUST00000202026 2060 ntTSL 1 (best) BASIC8.65□□□□□ -1.03
Hmgb3O54879 Zscan29-202ENSMUST00000110661 5072 ntAPPRIS P2 TSL 5 BASIC8.64□□□□□ -1.03
Hmgb3O54879 Ggcx-201ENSMUST00000065906 2929 ntAPPRIS P1 TSL 1 (best) BASIC8.64□□□□□ -1.03
Hmgb3O54879 Fscn3-201ENSMUST00000031719 1902 ntAPPRIS P1 TSL 1 (best) BASIC8.64□□□□□ -1.03
Hmgb3O54879 Zfp474-201ENSMUST00000072666 1930 ntAPPRIS P1 TSL 1 (best) BASIC8.64□□□□□ -1.03
Hmgb3O54879 Tbpl1-202ENSMUST00000127698 2873 ntAPPRIS P1 TSL 1 (best) BASIC8.64□□□□□ -1.03
Hmgb3O54879 Tnfaip8-212ENSMUST00000179937 2385 ntTSL 1 (best) BASIC8.64□□□□□ -1.03
Hmgb3O54879 CT009489.1-201ENSMUST00000227740 1893 ntBASIC8.64□□□□□ -1.03
Hmgb3O54879 Pcdh15-229ENSMUST00000155701 2754 ntTSL 1 (best) BASIC8.64□□□□□ -1.03
Hmgb3O54879 Gsg1-203ENSMUST00000111910 1384 ntAPPRIS ALT2 TSL 5 BASIC8.64□□□□□ -1.03
Hmgb3O54879 Mir124a-1hg-201ENSMUST00000180610 4103 ntTSL 1 (best) BASIC8.64□□□□□ -1.03
Hmgb3O54879 Gm21759-201ENSMUST00000178345 1828 ntBASIC8.64□□□□□ -1.03
Hmgb3O54879 Ascc2-201ENSMUST00000070257 2650 ntAPPRIS P2 TSL 1 (best) BASIC8.64□□□□□ -1.03
Hmgb3O54879 Gm11426-201ENSMUST00000125600 2220 ntTSL 2 BASIC8.64□□□□□ -1.03
Hmgb3O54879 Dmrtc1b-203ENSMUST00000118842 1321 ntAPPRIS ALT2 TSL 1 (best) BASIC8.64□□□□□ -1.03
Hmgb3O54879 Picalm-201ENSMUST00000049537 3528 ntTSL 1 (best) BASIC8.64□□□□□ -1.03
Hmgb3O54879 Blm-202ENSMUST00000170315 4770 ntAPPRIS ALT2 TSL 1 (best) BASIC8.64□□□□□ -1.03
Hmgb3O54879 Klhl22-202ENSMUST00000120488 2596 ntAPPRIS P1 TSL 1 (best) BASIC8.64□□□□□ -1.03
Hmgb3O54879 Fam114a2-201ENSMUST00000020831 2557 ntAPPRIS P3 TSL 1 (best) BASIC8.64□□□□□ -1.03
Hmgb3O54879 Gm11596-201ENSMUST00000105058 1079 ntAPPRIS P1 BASIC8.64□□□□□ -1.03
Hmgb3O54879 Hist1h3d-201ENSMUST00000105105 1249 ntAPPRIS P1 BASIC8.64□□□□□ -1.03
Hmgb3O54879 Gm12501-201ENSMUST00000119163 529 ntBASIC8.64□□□□□ -1.03
Hmgb3O54879 Gm12337-201ENSMUST00000119634 400 ntBASIC8.64□□□□□ -1.03
Hmgb3O54879 Gm14285-201ENSMUST00000146049 380 ntTSL 1 (best) BASIC8.64□□□□□ -1.03
Hmgb3O54879 Gm11457-203ENSMUST00000146846 676 ntTSL 3 BASIC8.64□□□□□ -1.03
Hmgb3O54879 Gm25661-201ENSMUST00000157704 296 ntBASIC8.64□□□□□ -1.03
Hmgb3O54879 Gm24844-201ENSMUST00000158679 127 ntBASIC8.64□□□□□ -1.03
Hmgb3O54879 Gm10142-201ENSMUST00000179767 363 ntAPPRIS P1 BASIC8.64□□□□□ -1.03
Hmgb3O54879 Gm26838-201ENSMUST00000180485 911 ntTSL 1 (best) BASIC8.64□□□□□ -1.03
Hmgb3O54879 Gm37852-201ENSMUST00000193027 350 ntBASIC8.64□□□□□ -1.03
Hmgb3O54879 AY702102-202ENSMUST00000194651 1173 ntBASIC8.64□□□□□ -1.03
Hmgb3O54879 Gm42682-201ENSMUST00000198349 1265 ntBASIC8.64□□□□□ -1.03
Hmgb3O54879 Gm44364-201ENSMUST00000198368 141 ntBASIC8.64□□□□□ -1.03
Hmgb3O54879 Cox6b1-204ENSMUST00000208838 354 ntTSL 3 BASIC8.64□□□□□ -1.03
Hmgb3O54879 Gm45310-201ENSMUST00000210436 275 ntBASIC8.64□□□□□ -1.03
Hmgb3O54879 AC159890.1-201ENSMUST00000215382 684 ntTSL 5 BASIC8.64□□□□□ -1.03
Hmgb3O54879 AC125350.2-201ENSMUST00000224737 727 ntBASIC8.64□□□□□ -1.03
Hmgb3O54879 Nit2-201ENSMUST00000023432 1280 ntAPPRIS P1 TSL 1 (best) BASIC8.64□□□□□ -1.03
Hmgb3O54879 1700016D06Rik-201ENSMUST00000033906 1263 ntAPPRIS P1 TSL 1 (best) BASIC8.64□□□□□ -1.03
Hmgb3O54879 Wfdc6a-201ENSMUST00000099096 805 ntAPPRIS P1 TSL 1 (best) BASIC8.64□□□□□ -1.03
Hmgb3O54879 Scmh1-202ENSMUST00000064991 2548 ntAPPRIS ALT2 TSL 5 BASIC8.64□□□□□ -1.03
Hmgb3O54879 Copz1-201ENSMUST00000100162 1669 ntAPPRIS P1 TSL 1 (best) BASIC8.64□□□□□ -1.03
Hmgb3O54879 Arfgap3-202ENSMUST00000226124 2461 ntAPPRIS ALT2 BASIC8.64□□□□□ -1.03
Hmgb3O54879 Pclo-201ENSMUST00000030691 20084 ntAPPRIS P1 TSL 5 BASIC8.64□□□□□ -1.03
Hmgb3O54879 Slc36a2-201ENSMUST00000039305 2429 ntAPPRIS P1 TSL 1 (best) BASIC8.64□□□□□ -1.03
Hmgb3O54879 Pgbd5-206ENSMUST00000172566 2842 ntAPPRIS ALT2 TSL 1 (best) BASIC8.64□□□□□ -1.03
Hmgb3O54879 Zfp958-202ENSMUST00000202692 2364 ntAPPRIS P1 TSL 1 (best) BASIC8.64□□□□□ -1.03
Hmgb3O54879 Tnfrsf9-204ENSMUST00000105672 1999 ntAPPRIS ALT2 TSL 1 (best) BASIC8.64□□□□□ -1.03
Hmgb3O54879 AC156802.2-203ENSMUST00000226032 1906 ntBASIC8.64□□□□□ -1.03
Hmgb3O54879 Lexm-204ENSMUST00000189032 1549 ntAPPRIS P1 TSL 1 (best) BASIC8.64□□□□□ -1.03
Hmgb3O54879 Olfr464-205ENSMUST00000217112 2232 ntAPPRIS P1 TSL 5 BASIC8.64□□□□□ -1.03
Hmgb3O54879 Map4k4-217ENSMUST00000195636 4082 ntAPPRIS ALT2 TSL 5 BASIC8.64□□□□□ -1.03
Hmgb3O54879 Cpvl-202ENSMUST00000203101 1488 ntTSL 1 (best) BASIC8.64□□□□□ -1.03
Hmgb3O54879 Crcp-201ENSMUST00000026608 1492 ntAPPRIS P1 TSL 1 (best) BASIC8.64□□□□□ -1.03
Hmgb3O54879 Gm26670-201ENSMUST00000180429 3287 ntBASIC8.63□□□□□ -1.03
Hmgb3O54879 Gm39464-201ENSMUST00000214091 2169 ntTSL 5 BASIC8.63□□□□□ -1.03
Hmgb3O54879 Gm33914-201ENSMUST00000214108 2150 ntTSL 5 BASIC8.63□□□□□ -1.03
Hmgb3O54879 Speer4b-201ENSMUST00000053257 2193 ntAPPRIS P1 TSL 1 (best) BASIC8.63□□□□□ -1.03
Hmgb3O54879 Nod2-203ENSMUST00000118370 4653 ntAPPRIS P2 TSL 1 (best) BASIC8.63□□□□□ -1.03
Retrieved 100 of 76,532 protein–RNA pairs in 88.4 ms