Protein–RNA interactions for Protein: Q9R053

Scn11a, Sodium channel protein type 11 subunit alpha, mousemouse

Predictions only

Length 1,765 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn11aQ9R053 Sh3bp1-204ENSMUST00000109698 1923 ntTSL 1 (best) BASIC24.06■■□□□ 1.44
Scn11aQ9R053 Pick1-204ENSMUST00000163571 2054 ntAPPRIS P1 TSL 5 BASIC24.06■■□□□ 1.44
Scn11aQ9R053 Gm7102-201ENSMUST00000180168 1624 ntAPPRIS P1 BASIC24.06■■□□□ 1.44
Scn11aQ9R053 Fbxl3-204ENSMUST00000132004 2534 ntTSL 1 (best) BASIC24.06■■□□□ 1.44
Scn11aQ9R053 L3mbtl4-201ENSMUST00000093007 2445 ntAPPRIS P1 TSL 5 BASIC24.06■■□□□ 1.44
Scn11aQ9R053 Anapc1-202ENSMUST00000110332 1214 ntTSL 1 (best) BASIC24.06■■□□□ 1.44
Scn11aQ9R053 Gm27801-201ENSMUST00000184174 223 ntBASIC24.06■■□□□ 1.44
Scn11aQ9R053 B230217C12Rik-201ENSMUST00000054783 1189 ntAPPRIS P1 TSL 5 BASIC24.06■■□□□ 1.44
Scn11aQ9R053 Purg-201ENSMUST00000070340 1064 ntAPPRIS P1 BASIC24.06■■□□□ 1.44
Scn11aQ9R053 Hdhd2-206ENSMUST00000145634 1585 ntAPPRIS P1 TSL 5 BASIC24.05■■□□□ 1.44
Scn11aQ9R053 Cpeb3-205ENSMUST00000126781 2095 ntTSL 1 (best) BASIC24.05■■□□□ 1.44
Scn11aQ9R053 Grtp1-207ENSMUST00000211128 1416 ntTSL 1 (best) BASIC24.05■■□□□ 1.44
Scn11aQ9R053 Gm14281-201ENSMUST00000121700 1294 ntBASIC24.05■■□□□ 1.44
Scn11aQ9R053 Kcnd3os-201ENSMUST00000130683 1091 ntTSL 1 (best) BASIC24.05■■□□□ 1.44
Scn11aQ9R053 Ints11-201ENSMUST00000030901 2368 ntAPPRIS P1 TSL 1 (best) BASIC24.05■■□□□ 1.44
Scn11aQ9R053 Slc17a7-201ENSMUST00000085374 2915 ntAPPRIS P1 TSL 1 (best) BASIC24.05■■□□□ 1.44
Scn11aQ9R053 Rhbdd3-201ENSMUST00000036320 1790 ntTSL 1 (best) BASIC24.04■■□□□ 1.44
Scn11aQ9R053 Hoxd1-201ENSMUST00000047793 1862 ntAPPRIS P1 TSL 1 (best) BASIC24.04■■□□□ 1.44
Scn11aQ9R053 Stac3-201ENSMUST00000035839 1790 ntAPPRIS P1 TSL 1 (best) BASIC24.04■■□□□ 1.44
Scn11aQ9R053 Gab2-202ENSMUST00000206791 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC24.04■■□□□ 1.44
Scn11aQ9R053 Lrrc1-205ENSMUST00000183873 3121 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
Scn11aQ9R053 Gm38165-201ENSMUST00000191654 486 ntTSL 1 (best) BASIC24.03■■□□□ 1.44
Scn11aQ9R053 Gm45168-202ENSMUST00000206461 1069 ntTSL 5 BASIC24.03■■□□□ 1.44
Scn11aQ9R053 Wasl-202ENSMUST00000041737 1298 ntTSL 1 (best) BASIC24.03■■□□□ 1.44
Scn11aQ9R053 Rpl13-201ENSMUST00000000756 780 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
Scn11aQ9R053 Tial1-209ENSMUST00000141126 1344 ntTSL 5 BASIC24.03■■□□□ 1.44
Scn11aQ9R053 Thap11-201ENSMUST00000040445 1819 ntAPPRIS P1 BASIC24.03■■□□□ 1.44
Scn11aQ9R053 Gas5-217ENSMUST00000161005 430 ntTSL 5 BASIC24.03■■□□□ 1.44
Scn11aQ9R053 Rnf39-202ENSMUST00000173072 631 ntTSL 2 BASIC24.03■■□□□ 1.44
Scn11aQ9R053 Zfp428-201ENSMUST00000071361 1182 ntAPPRIS P3 TSL 1 (best) BASIC24.03■■□□□ 1.44
Scn11aQ9R053 Crb3-202ENSMUST00000097299 1206 ntAPPRIS P3 TSL 1 (best) BASIC24.03■■□□□ 1.44
Scn11aQ9R053 Cnrip1-201ENSMUST00000058159 1654 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
Scn11aQ9R053 AC167978.1-201ENSMUST00000182488 456 ntTSL 3 BASIC24.02■■□□□ 1.44
Scn11aQ9R053 E530011L22Rik-202ENSMUST00000216791 2007 ntTSL 1 (best) BASIC24.02■■□□□ 1.44
Scn11aQ9R053 Hoxa11os-201ENSMUST00000134512 1839 ntTSL 1 (best) BASIC24.02■■□□□ 1.44
Scn11aQ9R053 Hnrnpab-203ENSMUST00000109103 1437 ntAPPRIS ALT2 TSL 1 (best) BASIC24.02■■□□□ 1.44
Scn11aQ9R053 1700030C10Rik-201ENSMUST00000110971 1471 ntBASIC24.02■■□□□ 1.44
Scn11aQ9R053 Dvl3-201ENSMUST00000003318 2498 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
Scn11aQ9R053 Prmt1-205ENSMUST00000207659 945 ntTSL 5 BASIC24.01■■□□□ 1.43
Scn11aQ9R053 Gm30085-201ENSMUST00000209694 594 ntTSL 3 BASIC24.01■■□□□ 1.43
Scn11aQ9R053 Prmt1-201ENSMUST00000045325 1071 ntTSL 5 BASIC24.01■■□□□ 1.43
Scn11aQ9R053 Tmem147-201ENSMUST00000006478 870 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
Scn11aQ9R053 A230052G05Rik-201ENSMUST00000050921 2302 ntBASIC24.01■■□□□ 1.43
Scn11aQ9R053 Maf1-205ENSMUST00000160853 1651 ntAPPRIS P2 TSL 1 (best) BASIC24.01■■□□□ 1.43
Scn11aQ9R053 Rem2-202ENSMUST00000164766 1884 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
Scn11aQ9R053 Gpx4-202ENSMUST00000105372 959 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
Scn11aQ9R053 Cpsf4-202ENSMUST00000160422 1756 ntAPPRIS ALT1 TSL 5 BASIC24■■□□□ 1.43
Scn11aQ9R053 Slbp-201ENSMUST00000057551 1906 ntAPPRIS P3 TSL 1 (best) BASIC24■■□□□ 1.43
Scn11aQ9R053 Ntf5-201ENSMUST00000058879 1963 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
Scn11aQ9R053 Gm15270-201ENSMUST00000125158 870 ntTSL 3 BASIC24■■□□□ 1.43
Scn11aQ9R053 Crnde-206ENSMUST00000179421 773 ntTSL 3 BASIC24■■□□□ 1.43
Scn11aQ9R053 Gamt-201ENSMUST00000020359 979 ntTSL 1 (best) BASIC24■■□□□ 1.43
Scn11aQ9R053 Gm45894-201ENSMUST00000211940 651 ntTSL 2 BASIC24■■□□□ 1.43
Scn11aQ9R053 Zbtb11os1-201ENSMUST00000186480 1350 ntBASIC24■■□□□ 1.43
Scn11aQ9R053 Krtap5-3-202ENSMUST00000187512 1652 ntAPPRIS P2 BASIC24■■□□□ 1.43
Scn11aQ9R053 Cep78-201ENSMUST00000047704 2548 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
Scn11aQ9R053 5730488B01Rik-201ENSMUST00000192889 2311 ntBASIC23.99■■□□□ 1.43
Scn11aQ9R053 Gm10153-201ENSMUST00000084415 522 ntTSL 5 BASIC23.99■■□□□ 1.43
Scn11aQ9R053 Prdm13-201ENSMUST00000076206 2993 ntAPPRIS ALT2 TSL 2 BASIC23.99■■□□□ 1.43
Scn11aQ9R053 Nrarp-201ENSMUST00000104999 2582 ntAPPRIS P1 BASIC23.99■■□□□ 1.43
Scn11aQ9R053 Fezf2-203ENSMUST00000224714 2429 ntAPPRIS P1 BASIC23.99■■□□□ 1.43
Scn11aQ9R053 D030056L22Rik-201ENSMUST00000055792 1631 ntAPPRIS P2 TSL 1 (best) BASIC23.99■■□□□ 1.43
Scn11aQ9R053 Cox18-202ENSMUST00000118816 1307 ntAPPRIS ALT2 TSL 1 (best) BASIC23.98■■□□□ 1.43
Scn11aQ9R053 Gm16076-201ENSMUST00000140116 480 ntTSL 3 BASIC23.98■■□□□ 1.43
Scn11aQ9R053 Nespas-201ENSMUST00000143738 1083 ntBASIC23.98■■□□□ 1.43
Scn11aQ9R053 Ccdc84-211ENSMUST00000217270 681 ntTSL 1 (best) BASIC23.98■■□□□ 1.43
Scn11aQ9R053 Cdkl3-202ENSMUST00000063321 2008 ntAPPRIS ALT2 TSL 1 (best) BASIC23.98■■□□□ 1.43
Scn11aQ9R053 Stoml2-201ENSMUST00000030169 1874 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
Scn11aQ9R053 Fdxacb1-203ENSMUST00000176335 1817 ntTSL 1 (best) BASIC23.98■■□□□ 1.43
Scn11aQ9R053 Ndufaf1-201ENSMUST00000028768 1451 ntAPPRIS P2 TSL 1 (best) BASIC23.98■■□□□ 1.43
Scn11aQ9R053 Pbx2-201ENSMUST00000038149 3068 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
Scn11aQ9R053 Vax2os-202ENSMUST00000150233 595 ntTSL 3 BASIC23.98■■□□□ 1.43
Scn11aQ9R053 Prmt1-210ENSMUST00000208829 621 ntTSL 5 BASIC23.98■■□□□ 1.43
Scn11aQ9R053 H2-Ke6-201ENSMUST00000045467 965 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
Scn11aQ9R053 Mpzl1-202ENSMUST00000111435 2285 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
Scn11aQ9R053 Spock1-204ENSMUST00000186271 2005 ntAPPRIS P3 TSL 1 (best) BASIC23.97■■□□□ 1.43
Scn11aQ9R053 Pcgf6-201ENSMUST00000026032 2098 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
Scn11aQ9R053 Mtfmt-201ENSMUST00000074792 2042 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
Scn11aQ9R053 Carm1-201ENSMUST00000034703 3220 ntAPPRIS P3 TSL 1 (best) BASIC23.97■■□□□ 1.43
Scn11aQ9R053 Gm10571-201ENSMUST00000097869 1638 ntBASIC23.96■■□□□ 1.43
Scn11aQ9R053 Gm11691-201ENSMUST00000130963 658 ntTSL 2 BASIC23.96■■□□□ 1.43
Scn11aQ9R053 Rab6b-202ENSMUST00000189134 716 ntTSL 3 BASIC23.96■■□□□ 1.43
Scn11aQ9R053 Dtymk-201ENSMUST00000027503 1003 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
Scn11aQ9R053 Ercc6l2-208ENSMUST00000144763 1820 ntTSL 1 (best) BASIC23.96■■□□□ 1.43
Scn11aQ9R053 Zfp639-202ENSMUST00000191783 1988 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
Scn11aQ9R053 Ihh-201ENSMUST00000164097 2468 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
Scn11aQ9R053 AC137127.1-201ENSMUST00000213466 1078 ntBASIC23.96■■□□□ 1.43
Scn11aQ9R053 Mrps33-201ENSMUST00000031978 1107 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
Scn11aQ9R053 Ugdh-201ENSMUST00000031103 2550 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.43
Scn11aQ9R053 Slc35b2-201ENSMUST00000041353 2326 ntTSL 1 (best) BASIC23.95■■□□□ 1.43
Scn11aQ9R053 Gm26682-201ENSMUST00000180850 1729 ntTSL 1 (best) BASIC23.95■■□□□ 1.42
Scn11aQ9R053 Tead2-201ENSMUST00000033060 2140 ntAPPRIS P3 TSL 1 (best) BASIC23.95■■□□□ 1.42
Scn11aQ9R053 Gfra4-205ENSMUST00000110239 810 ntAPPRIS ALT2 TSL 1 (best) BASIC23.95■■□□□ 1.42
Scn11aQ9R053 Zfp629-207ENSMUST00000134446 670 ntTSL 1 (best) BASIC23.95■■□□□ 1.42
Scn11aQ9R053 Pgam5-201ENSMUST00000059229 2044 ntAPPRIS P3 TSL 1 (best) BASIC23.95■■□□□ 1.42
Scn11aQ9R053 Whrn-204ENSMUST00000095037 2419 ntTSL 1 (best) BASIC23.94■■□□□ 1.42
Scn11aQ9R053 Cirbp-202ENSMUST00000105365 1321 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
Scn11aQ9R053 Gm12216-203ENSMUST00000121435 655 ntAPPRIS ALT2 TSL 5 BASIC23.94■■□□□ 1.42
Scn11aQ9R053 Tfg-202ENSMUST00000121554 716 ntAPPRIS ALT2 TSL 5 BASIC23.94■■□□□ 1.42
Scn11aQ9R053 CT030146.1-201ENSMUST00000220919 217 ntBASIC23.94■■□□□ 1.42
Retrieved 100 of 76,532 protein–RNA pairs in 17.5 ms