Protein–RNA interactions for Protein: Q8C6K9

Col6a6, Collagen alpha-6(VI) chain, mousemouse

Predictions only

Length 2,265 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col6a6Q8C6K9 Lemd3-201ENSMUST00000119093 4370 ntAPPRIS ALT2 TSL 2 BASIC18.07■□□□□ 0.48
Col6a6Q8C6K9 Dedd2-202ENSMUST00000205271 1942 ntAPPRIS P1 TSL 5 BASIC18.07■□□□□ 0.48
Col6a6Q8C6K9 Ski-201ENSMUST00000030917 5522 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Col6a6Q8C6K9 0610010K14Rik-202ENSMUST00000021181 779 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
Col6a6Q8C6K9 Gm9988-201ENSMUST00000069786 435 ntBASIC18.07■□□□□ 0.48
Col6a6Q8C6K9 Polr3gl-201ENSMUST00000091924 1427 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Col6a6Q8C6K9 6330403K07Rik-201ENSMUST00000156068 1494 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
Col6a6Q8C6K9 Tgfbr3l-201ENSMUST00000110993 1075 ntAPPRIS P1 TSL 5 BASIC18.06■□□□□ 0.48
Col6a6Q8C6K9 Gm12473-201ENSMUST00000137535 579 ntTSL 5 BASIC18.06■□□□□ 0.48
Col6a6Q8C6K9 Dedd-203ENSMUST00000111299 2322 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Col6a6Q8C6K9 Uap1-202ENSMUST00000111350 2311 ntAPPRIS ALT1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Col6a6Q8C6K9 A930001C03Rik-204ENSMUST00000154407 1402 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
Col6a6Q8C6K9 Tmem222-201ENSMUST00000105907 1484 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Col6a6Q8C6K9 Cant1-205ENSMUST00000106289 1600 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
Col6a6Q8C6K9 Tssk2-201ENSMUST00000055374 1387 ntAPPRIS P1 BASIC18.06■□□□□ 0.48
Col6a6Q8C6K9 Morf4l1-201ENSMUST00000085248 1882 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
Col6a6Q8C6K9 Ly6h-204ENSMUST00000127095 1336 ntAPPRIS P3 TSL 1 (best) BASIC18.06■□□□□ 0.48
Col6a6Q8C6K9 Fam3c-203ENSMUST00000163963 1617 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
Col6a6Q8C6K9 Ccsap-202ENSMUST00000122421 2673 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Col6a6Q8C6K9 Prmt1-202ENSMUST00000107843 1508 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
Col6a6Q8C6K9 Pex16-201ENSMUST00000028650 1392 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Col6a6Q8C6K9 Fezf2-201ENSMUST00000022262 2188 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Col6a6Q8C6K9 Lsm14b-201ENSMUST00000055485 2534 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Col6a6Q8C6K9 Fam228b-205ENSMUST00000218575 1281 ntAPPRIS ALT2 TSL 2 BASIC18.05■□□□□ 0.48
Col6a6Q8C6K9 D030056L22Rik-201ENSMUST00000055792 1631 ntAPPRIS P2 TSL 1 (best) BASIC18.05■□□□□ 0.48
Col6a6Q8C6K9 Zfp639-202ENSMUST00000191783 1988 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Col6a6Q8C6K9 Hoxa11os-201ENSMUST00000134512 1839 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
Col6a6Q8C6K9 Fbxo24-201ENSMUST00000031732 2161 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Col6a6Q8C6K9 Gm26796-201ENSMUST00000181092 2276 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
Col6a6Q8C6K9 Ern1-203ENSMUST00000106800 654 ntTSL 3 BASIC18.05■□□□□ 0.48
Col6a6Q8C6K9 Zcrb1-208ENSMUST00000162160 850 ntAPPRIS ALT1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Col6a6Q8C6K9 Snrpc-201ENSMUST00000071006 870 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Col6a6Q8C6K9 Gm10653-202ENSMUST00000139570 835 ntBASIC18.04■□□□□ 0.48
Col6a6Q8C6K9 Gm7514-201ENSMUST00000209475 934 ntBASIC18.04■□□□□ 0.48
Col6a6Q8C6K9 Cep78-201ENSMUST00000047704 2548 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Col6a6Q8C6K9 Eda-204ENSMUST00000113777 1056 ntTSL 5 BASIC18.03■□□□□ 0.48
Col6a6Q8C6K9 Eda-201ENSMUST00000071453 1152 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
Col6a6Q8C6K9 Diablo-203ENSMUST00000111587 1576 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Col6a6Q8C6K9 Pth1r-201ENSMUST00000006005 2307 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Col6a6Q8C6K9 Nsfl1c-202ENSMUST00000089140 1486 ntAPPRIS P3 TSL 5 BASIC18.03■□□□□ 0.48
Col6a6Q8C6K9 Hgfac-206ENSMUST00000202573 434 ntTSL 5 BASIC18.03■□□□□ 0.48
Col6a6Q8C6K9 Eif1-201ENSMUST00000049385 1322 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Col6a6Q8C6K9 1810010K12Rik-201ENSMUST00000070378 1324 ntBASIC18.03■□□□□ 0.48
Col6a6Q8C6K9 Dnpep-201ENSMUST00000066668 2488 ntAPPRIS P3 TSL 1 (best) BASIC18.03■□□□□ 0.48
Col6a6Q8C6K9 AC121965.1-201ENSMUST00000221422 861 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
Col6a6Q8C6K9 Mettl26-205ENSMUST00000169308 1026 ntTSL 2 BASIC18.02■□□□□ 0.47
Col6a6Q8C6K9 Gm22240-201ENSMUST00000175225 82 ntBASIC18.02■□□□□ 0.47
Col6a6Q8C6K9 Med30-201ENSMUST00000037115 1007 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
Col6a6Q8C6K9 2310034G01Rik-201ENSMUST00000189008 1373 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.47
Col6a6Q8C6K9 Metrn-202ENSMUST00000165838 1363 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Col6a6Q8C6K9 Strn3-202ENSMUST00000169503 2791 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
Col6a6Q8C6K9 Heca-201ENSMUST00000037879 5098 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Col6a6Q8C6K9 Art5-204ENSMUST00000106937 1713 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Col6a6Q8C6K9 Trim27-207ENSMUST00000223065 2046 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
Col6a6Q8C6K9 2510002D24Rik-202ENSMUST00000123146 361 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
Col6a6Q8C6K9 Mir5133-201ENSMUST00000174955 77 ntBASIC18.01■□□□□ 0.47
Col6a6Q8C6K9 C430014B12Rik-202ENSMUST00000186858 657 ntTSL 2 BASIC18.01■□□□□ 0.47
Col6a6Q8C6K9 Mindy2-202ENSMUST00000213380 2521 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
Col6a6Q8C6K9 4930412O13Rik-201ENSMUST00000026889 1187 ntAPPRIS P5 TSL 1 (best) BASIC18.01■□□□□ 0.47
Col6a6Q8C6K9 Mrps33-201ENSMUST00000031978 1107 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Col6a6Q8C6K9 Ezh2-203ENSMUST00000114616 2670 ntAPPRIS ALT1 TSL 5 BASIC18■□□□□ 0.47
Col6a6Q8C6K9 Snap91-203ENSMUST00000074501 2577 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
Col6a6Q8C6K9 Fgfbp3-201ENSMUST00000057337 1772 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Col6a6Q8C6K9 Mbp-208ENSMUST00000114676 1685 ntTSL 1 (best) BASIC18■□□□□ 0.47
Col6a6Q8C6K9 Pts-208ENSMUST00000215416 439 ntTSL 2 BASIC18■□□□□ 0.47
Col6a6Q8C6K9 Gm10065-201ENSMUST00000076238 345 ntAPPRIS P1 BASIC18■□□□□ 0.47
Col6a6Q8C6K9 Prdm11-205ENSMUST00000178666 1870 ntTSL 5 BASIC18■□□□□ 0.47
Col6a6Q8C6K9 Taf4-204ENSMUST00000227325 4380 ntAPPRIS ALT2 BASIC18■□□□□ 0.47
Col6a6Q8C6K9 Barhl1-202ENSMUST00000113847 2160 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Col6a6Q8C6K9 2310068J16Rik-201ENSMUST00000188271 1124 ntBASIC18■□□□□ 0.47
Col6a6Q8C6K9 AC137127.1-201ENSMUST00000213466 1078 ntBASIC18■□□□□ 0.47
Col6a6Q8C6K9 Ppp4r2-201ENSMUST00000063854 4874 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Col6a6Q8C6K9 Rnf8-201ENSMUST00000024817 2077 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Col6a6Q8C6K9 Ddah2-201ENSMUST00000007255 1342 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Col6a6Q8C6K9 Psmb5-201ENSMUST00000022803 899 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Col6a6Q8C6K9 Magi2-201ENSMUST00000088516 4843 ntAPPRIS P2 TSL 5 BASIC17.99■□□□□ 0.47
Col6a6Q8C6K9 Rbfox3-204ENSMUST00000106278 1542 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
Col6a6Q8C6K9 Rmdn2-208ENSMUST00000225357 2118 ntAPPRIS P1 BASIC17.99■□□□□ 0.47
Col6a6Q8C6K9 Ankrd9-201ENSMUST00000043459 1706 ntAPPRIS P2 TSL 1 (best) BASIC17.99■□□□□ 0.47
Col6a6Q8C6K9 Hist1h4c-201ENSMUST00000102967 820 ntAPPRIS P1 BASIC17.98■□□□□ 0.47
Col6a6Q8C6K9 Atraid-201ENSMUST00000013766 966 ntAPPRIS P2 TSL 1 (best) BASIC17.98■□□□□ 0.47
Col6a6Q8C6K9 Nfkbid-203ENSMUST00000108176 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
Col6a6Q8C6K9 Hnrnpab-203ENSMUST00000109103 1437 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
Col6a6Q8C6K9 Gm43859-201ENSMUST00000200075 1412 ntBASIC17.98■□□□□ 0.47
Col6a6Q8C6K9 Wnt2-201ENSMUST00000010941 2255 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Col6a6Q8C6K9 Slc35e2-203ENSMUST00000118607 2166 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Col6a6Q8C6K9 Klhl25-203ENSMUST00000205612 1343 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
Col6a6Q8C6K9 1700101I19Rik-202ENSMUST00000186712 510 ntBASIC17.98■□□□□ 0.47
Col6a6Q8C6K9 Gm42555-201ENSMUST00000199304 1039 ntBASIC17.98■□□□□ 0.47
Col6a6Q8C6K9 Maf1-201ENSMUST00000023212 1686 ntAPPRIS P2 TSL 1 (best) BASIC17.98■□□□□ 0.47
Col6a6Q8C6K9 Magi2-205ENSMUST00000197354 4785 ntAPPRIS ALT2 TSL 5 BASIC17.98■□□□□ 0.47
Col6a6Q8C6K9 Neurl4-211ENSMUST00000177138 4886 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
Col6a6Q8C6K9 Ppt2-204ENSMUST00000168391 1342 ntAPPRIS P1 TSL 5 BASIC17.97■□□□□ 0.47
Col6a6Q8C6K9 Whrn-204ENSMUST00000095037 2419 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
Col6a6Q8C6K9 Gm39115-201ENSMUST00000211350 699 ntAPPRIS P1 BASIC17.97■□□□□ 0.47
Col6a6Q8C6K9 Fgf22-203ENSMUST00000219981 1070 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
Col6a6Q8C6K9 Lrrc1-205ENSMUST00000183873 3121 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Col6a6Q8C6K9 Tusc3-203ENSMUST00000209440 1535 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Col6a6Q8C6K9 Ugp2-201ENSMUST00000060895 2044 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
Col6a6Q8C6K9 1700123O20Rik-201ENSMUST00000038539 1843 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Retrieved 100 of 76,532 protein–RNA pairs in 17.7 ms