Protein–RNA interactions for Protein: Q811S7

Ubp1, Upstream-binding protein 1, mousemouse

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ubp1Q811S7 Lsr-203ENSMUST00000108116 2071 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
Ubp1Q811S7 Zfp639-202ENSMUST00000191783 1988 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Ubp1Q811S7 Ccnd3-201ENSMUST00000037333 1999 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Ubp1Q811S7 Gm21964-202ENSMUST00000213641 1649 ntAPPRIS ALT2 TSL 5 BASIC19.59■□□□□ 0.73
Ubp1Q811S7 Naa20-202ENSMUST00000110000 1142 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Ubp1Q811S7 Pnkd-204ENSMUST00000113805 740 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
Ubp1Q811S7 Mal2-201ENSMUST00000025356 2950 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Ubp1Q811S7 Spata33-201ENSMUST00000060133 491 ntAPPRIS P2 TSL 1 (best) BASIC19.59■□□□□ 0.73
Ubp1Q811S7 Cotl1-202ENSMUST00000168698 1520 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Ubp1Q811S7 Nectin1-201ENSMUST00000034510 5653 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Ubp1Q811S7 Mapkapk2-201ENSMUST00000016672 2854 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Ubp1Q811S7 Rcor1-201ENSMUST00000084968 5684 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.73
Ubp1Q811S7 Rbm38-201ENSMUST00000029014 1768 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
Ubp1Q811S7 Rgs19-201ENSMUST00000002532 1511 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
Ubp1Q811S7 Gm10382-201ENSMUST00000100700 1233 ntAPPRIS P1 BASIC19.58■□□□□ 0.72
Ubp1Q811S7 Gm6569-201ENSMUST00000154520 811 ntAPPRIS P1 TSL 3 BASIC19.58■□□□□ 0.72
Ubp1Q811S7 Mir6236-201ENSMUST00000184437 123 ntBASIC19.58■□□□□ 0.72
Ubp1Q811S7 Shisa5-202ENSMUST00000112059 1910 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.72
Ubp1Q811S7 Chadl-201ENSMUST00000072910 2548 ntAPPRIS P1 TSL 5 BASIC19.58■□□□□ 0.72
Ubp1Q811S7 Kansl1-204ENSMUST00000106972 5427 ntAPPRIS ALT2 TSL 5 BASIC19.58■□□□□ 0.72
Ubp1Q811S7 Sh3bp1-204ENSMUST00000109698 1923 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
Ubp1Q811S7 Olfm1-204ENSMUST00000113920 2513 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
Ubp1Q811S7 Ccdc149-202ENSMUST00000198008 2470 ntTSL 5 BASIC19.57■□□□□ 0.72
Ubp1Q811S7 0610039K10Rik-202ENSMUST00000184724 952 ntBASIC19.57■□□□□ 0.72
Ubp1Q811S7 Kcnma1-215ENSMUST00000190339 890 ntTSL 5 BASIC19.57■□□□□ 0.72
Ubp1Q811S7 Snx16-203ENSMUST00000195822 1084 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
Ubp1Q811S7 AC138214.1-201ENSMUST00000223838 420 ntAPPRIS P1 BASIC19.57■□□□□ 0.72
Ubp1Q811S7 Gpr137c-207ENSMUST00000227086 4997 ntAPPRIS ALT2 BASIC19.57■□□□□ 0.72
Ubp1Q811S7 Kcnn2-203ENSMUST00000169783 1625 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
Ubp1Q811S7 Gm9828-202ENSMUST00000126622 1446 ntTSL 3 BASIC19.57■□□□□ 0.72
Ubp1Q811S7 Lsm14a-201ENSMUST00000085585 2944 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Ubp1Q811S7 Spint2-201ENSMUST00000098604 1384 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Ubp1Q811S7 Zbtb7a-202ENSMUST00000117956 1863 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Ubp1Q811S7 Ugdh-201ENSMUST00000031103 2550 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Ubp1Q811S7 Spock1-204ENSMUST00000186271 2005 ntAPPRIS P3 TSL 1 (best) BASIC19.56■□□□□ 0.72
Ubp1Q811S7 AC152827.1-201ENSMUST00000221143 2189 ntBASIC19.56■□□□□ 0.72
Ubp1Q811S7 Best2-201ENSMUST00000059072 1971 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Ubp1Q811S7 Gm43137-201ENSMUST00000198052 594 ntBASIC19.56■□□□□ 0.72
Ubp1Q811S7 Appbp2os-202ENSMUST00000206972 447 ntBASIC19.56■□□□□ 0.72
Ubp1Q811S7 Gtpbp2-217ENSMUST00000172170 2587 ntTSL 5 BASIC19.56■□□□□ 0.72
Ubp1Q811S7 Mmp24-201ENSMUST00000029141 4306 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Ubp1Q811S7 Mfsd4a-202ENSMUST00000112365 1536 ntAPPRIS ALT2 TSL 5 BASIC19.56■□□□□ 0.72
Ubp1Q811S7 Tusc3-203ENSMUST00000209440 1535 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Ubp1Q811S7 1110004F10Rik-201ENSMUST00000032899 1479 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Ubp1Q811S7 Tead1-204ENSMUST00000106638 3047 ntAPPRIS ALT1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Ubp1Q811S7 Tomm40-201ENSMUST00000032555 1646 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Ubp1Q811S7 Stx3-202ENSMUST00000069285 2810 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Ubp1Q811S7 Gm11586-201ENSMUST00000123060 566 ntTSL 2 BASIC19.55■□□□□ 0.72
Ubp1Q811S7 Gm13429-202ENSMUST00000128242 692 ntTSL 3 BASIC19.55■□□□□ 0.72
Ubp1Q811S7 Gm14486-201ENSMUST00000144704 644 ntTSL 3 BASIC19.55■□□□□ 0.72
Ubp1Q811S7 Rps2-ps10-202ENSMUST00000170335 965 ntBASIC19.55■□□□□ 0.72
Ubp1Q811S7 Rhov-201ENSMUST00000037360 1703 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Ubp1Q811S7 Gpr137-204ENSMUST00000099782 1742 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
Ubp1Q811S7 Fam207a-201ENSMUST00000045454 2394 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Ubp1Q811S7 Sema6d-202ENSMUST00000076335 6276 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
Ubp1Q811S7 Mmadhc-201ENSMUST00000102769 1342 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Ubp1Q811S7 Slc30a4-201ENSMUST00000005952 5458 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Ubp1Q811S7 Mcam-201ENSMUST00000034650 2989 ntAPPRIS P2 TSL 1 (best) BASIC19.54■□□□□ 0.72
Ubp1Q811S7 Tuba1b-201ENSMUST00000077577 1743 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Ubp1Q811S7 Trim47-201ENSMUST00000021120 2204 ntAPPRIS P4 TSL 1 (best) BASIC19.54■□□□□ 0.72
Ubp1Q811S7 BC004004-202ENSMUST00000120346 1297 ntAPPRIS P1 TSL 5 BASIC19.54■□□□□ 0.72
Ubp1Q811S7 Ubxn1-202ENSMUST00000166407 1032 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Ubp1Q811S7 9530036O11Rik-201ENSMUST00000180878 876 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
Ubp1Q811S7 Sox12-202ENSMUST00000182625 4453 ntAPPRIS P1 BASIC19.54■□□□□ 0.72
Ubp1Q811S7 3830408C21Rik-205ENSMUST00000225426 1898 ntBASIC19.54■□□□□ 0.72
Ubp1Q811S7 Dalrd3-201ENSMUST00000019183 1746 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Ubp1Q811S7 Hpse-202ENSMUST00000112908 1958 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
Ubp1Q811S7 Tsen54-201ENSMUST00000021134 1979 ntAPPRIS P2 TSL 1 (best) BASIC19.53■□□□□ 0.72
Ubp1Q811S7 Tfap2e-201ENSMUST00000048194 2085 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Ubp1Q811S7 Stau2-217ENSMUST00000162751 3030 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Ubp1Q811S7 Stau2-201ENSMUST00000027052 2763 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
Ubp1Q811S7 Gm12821-201ENSMUST00000120022 600 ntBASIC19.53■□□□□ 0.72
Ubp1Q811S7 Gm27454-201ENSMUST00000185090 204 ntBASIC19.53■□□□□ 0.72
Ubp1Q811S7 Syt6-205ENSMUST00000121834 1710 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Ubp1Q811S7 Skor2-201ENSMUST00000166956 3141 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Ubp1Q811S7 Fbxw2-203ENSMUST00000113075 2260 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
Ubp1Q811S7 Neurl4-213ENSMUST00000177476 4952 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.72
Ubp1Q811S7 Cdan1-202ENSMUST00000110701 6384 ntAPPRIS P2 TSL 5 BASIC19.52■□□□□ 0.72
Ubp1Q811S7 Gmds-201ENSMUST00000041859 1713 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Ubp1Q811S7 Ttc39b-201ENSMUST00000030205 842 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
Ubp1Q811S7 Gyg-201ENSMUST00000118015 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.72
Ubp1Q811S7 Nrxn2-201ENSMUST00000077182 6059 ntAPPRIS ALT2 TSL 5 BASIC19.51■□□□□ 0.71
Ubp1Q811S7 Etv4-202ENSMUST00000107176 2377 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
Ubp1Q811S7 Etv4-201ENSMUST00000017868 2395 ntAPPRIS ALT1 TSL 5 BASIC19.51■□□□□ 0.71
Ubp1Q811S7 Evi5l-209ENSMUST00000177053 1542 ntAPPRIS P3 TSL 1 (best) BASIC19.51■□□□□ 0.71
Ubp1Q811S7 Tmem132b-201ENSMUST00000031446 7995 ntAPPRIS P1 TSL 5 BASIC19.51■□□□□ 0.71
Ubp1Q811S7 Bicdl2-201ENSMUST00000062967 1913 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Ubp1Q811S7 Ccng2-201ENSMUST00000031331 2810 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Ubp1Q811S7 Polr3gl-204ENSMUST00000145001 607 ntTSL 3 BASIC19.51■□□□□ 0.71
Ubp1Q811S7 Usf2-211ENSMUST00000172417 648 ntTSL 5 BASIC19.51■□□□□ 0.71
Ubp1Q811S7 Krtap5-2-201ENSMUST00000067978 937 ntAPPRIS ALT2 TSL 5 BASIC19.51■□□□□ 0.71
Ubp1Q811S7 Tysnd1-201ENSMUST00000020284 2286 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Ubp1Q811S7 Fbxw8-201ENSMUST00000049474 5000 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Ubp1Q811S7 Mtfmt-201ENSMUST00000074792 2042 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Ubp1Q811S7 Ankrd9-201ENSMUST00000043459 1706 ntAPPRIS P2 TSL 1 (best) BASIC19.51■□□□□ 0.71
Ubp1Q811S7 Dbnl-201ENSMUST00000020769 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
Ubp1Q811S7 Ppa1-201ENSMUST00000020286 1364 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Ubp1Q811S7 Ly6h-206ENSMUST00000156032 752 ntAPPRIS P3 TSL 3 BASIC19.5■□□□□ 0.71
Ubp1Q811S7 Sox8-202ENSMUST00000173447 928 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
Ubp1Q811S7 Ly6h-201ENSMUST00000023241 906 ntAPPRIS ALT1 TSL 2 BASIC19.5■□□□□ 0.71
Retrieved 100 of 76,532 protein–RNA pairs in 33.7 ms