Protein–RNA interactions for Protein: Q6PFF0

Scaf4, SR-related CTD-associated factor 4, mousemouse

Known RBP Predictions only

Length 1,209 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scaf4Q6PFF0 Slc16a10-201ENSMUST00000092566 5397 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Scaf4Q6PFF0 Myef2-209ENSMUST00000152367 2071 ntAPPRIS P4 TSL 1 (best) BASIC19.67■□□□□ 0.74
Scaf4Q6PFF0 Kif27-203ENSMUST00000225388 5121 ntAPPRIS P1 BASIC19.67■□□□□ 0.74
Scaf4Q6PFF0 Aatf-201ENSMUST00000018841 1822 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Scaf4Q6PFF0 Gfi1-203ENSMUST00000159164 2648 ntAPPRIS P3 TSL 1 (best) BASIC19.67■□□□□ 0.74
Scaf4Q6PFF0 Vegfb-202ENSMUST00000130048 1158 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
Scaf4Q6PFF0 Mir6538-201ENSMUST00000183713 110 ntBASIC19.67■□□□□ 0.74
Scaf4Q6PFF0 Nkx2-3-201ENSMUST00000057178 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Scaf4Q6PFF0 Eif5a-208ENSMUST00000108611 1353 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Scaf4Q6PFF0 Tsen54-202ENSMUST00000106481 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
Scaf4Q6PFF0 Zdhhc14-201ENSMUST00000089185 3115 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Scaf4Q6PFF0 Six3os1-206ENSMUST00000175921 2737 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
Scaf4Q6PFF0 Anapc5-205ENSMUST00000197074 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
Scaf4Q6PFF0 Anapc5-212ENSMUST00000199406 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
Scaf4Q6PFF0 Baiap2l2-201ENSMUST00000165408 2100 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Scaf4Q6PFF0 Kirrel-201ENSMUST00000041732 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
Scaf4Q6PFF0 Dleu2-209ENSMUST00000182957 352 ntTSL 2 BASIC19.66■□□□□ 0.74
Scaf4Q6PFF0 Gm45444-201ENSMUST00000211394 898 ntBASIC19.66■□□□□ 0.74
Scaf4Q6PFF0 AU022751-201ENSMUST00000101698 1838 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
Scaf4Q6PFF0 Tal1-204ENSMUST00000162489 2894 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Scaf4Q6PFF0 Dlg3-202ENSMUST00000087984 4956 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Scaf4Q6PFF0 Gyg-201ENSMUST00000118015 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
Scaf4Q6PFF0 Tmie-201ENSMUST00000050958 2802 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Scaf4Q6PFF0 Lefty1-201ENSMUST00000037361 1620 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Scaf4Q6PFF0 Pnldc1-201ENSMUST00000163394 1689 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Scaf4Q6PFF0 Meis3-201ENSMUST00000002495 1731 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Scaf4Q6PFF0 Dedd2-201ENSMUST00000058702 1828 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Scaf4Q6PFF0 Gm6802-201ENSMUST00000167843 1983 ntBASIC19.65■□□□□ 0.74
Scaf4Q6PFF0 Kcnn4-201ENSMUST00000171904 1990 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Scaf4Q6PFF0 Rtl10-201ENSMUST00000146673 865 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Scaf4Q6PFF0 Ybx2-205ENSMUST00000149194 1235 ntTSL 5 BASIC19.65■□□□□ 0.74
Scaf4Q6PFF0 Chml-203ENSMUST00000210367 1324 ntTSL 5 BASIC19.65■□□□□ 0.74
Scaf4Q6PFF0 Sept7-202ENSMUST00000165594 2516 ntAPPRIS P2 TSL 5 BASIC19.65■□□□□ 0.74
Scaf4Q6PFF0 Acot3-203ENSMUST00000223080 1545 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
Scaf4Q6PFF0 Zbtb7a-204ENSMUST00000121840 1676 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
Scaf4Q6PFF0 Mtus2-205ENSMUST00000110515 1792 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Scaf4Q6PFF0 Cers2-201ENSMUST00000015858 2216 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
Scaf4Q6PFF0 Gm16599-201ENSMUST00000148082 1182 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
Scaf4Q6PFF0 Ccdc84-212ENSMUST00000217351 888 ntTSL 3 BASIC19.64■□□□□ 0.73
Scaf4Q6PFF0 Prss50-201ENSMUST00000051097 1456 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Scaf4Q6PFF0 Gnb2-201ENSMUST00000031726 1860 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Scaf4Q6PFF0 Stk3-202ENSMUST00000067033 2471 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
Scaf4Q6PFF0 Rasgef1a-201ENSMUST00000164960 3284 ntAPPRIS ALT2 TSL 5 BASIC19.64■□□□□ 0.73
Scaf4Q6PFF0 Slc30a4-201ENSMUST00000005952 5458 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Scaf4Q6PFF0 Zfp653-201ENSMUST00000043922 2108 ntAPPRIS P3 TSL 1 (best) BASIC19.63■□□□□ 0.73
Scaf4Q6PFF0 Fdxacb1-203ENSMUST00000176335 1817 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
Scaf4Q6PFF0 Tmx4-202ENSMUST00000110119 596 ntTSL 2 BASIC19.63■□□□□ 0.73
Scaf4Q6PFF0 Gm17324-201ENSMUST00000165499 922 ntAPPRIS P1 BASIC19.63■□□□□ 0.73
Scaf4Q6PFF0 Krtap28-10-201ENSMUST00000188323 957 ntAPPRIS P1 BASIC19.63■□□□□ 0.73
Scaf4Q6PFF0 Slc35f4-202ENSMUST00000123534 2748 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
Scaf4Q6PFF0 Nfe2-201ENSMUST00000075192 1697 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Scaf4Q6PFF0 Ascl1-201ENSMUST00000020243 2481 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Scaf4Q6PFF0 Fam216a-201ENSMUST00000031419 1388 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Scaf4Q6PFF0 AC166358.2-201ENSMUST00000223403 734 ntTSL 5 BASIC19.62■□□□□ 0.73
Scaf4Q6PFF0 Fbxw8-201ENSMUST00000049474 5000 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Scaf4Q6PFF0 4930507D05Rik-201ENSMUST00000181110 1834 ntAPPRIS P1 BASIC19.62■□□□□ 0.73
Scaf4Q6PFF0 Cdk5r2-201ENSMUST00000160379 2799 ntAPPRIS P1 BASIC19.61■□□□□ 0.73
Scaf4Q6PFF0 Wdsub1-202ENSMUST00000102751 1526 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
Scaf4Q6PFF0 Mrgbp-201ENSMUST00000029085 1510 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Scaf4Q6PFF0 Becn1-217ENSMUST00000172233 1493 ntTSL 5 BASIC19.61■□□□□ 0.73
Scaf4Q6PFF0 Tmem132b-201ENSMUST00000031446 7995 ntAPPRIS P1 TSL 5 BASIC19.61■□□□□ 0.73
Scaf4Q6PFF0 Bloc1s5-202ENSMUST00000224115 1020 ntBASIC19.61■□□□□ 0.73
Scaf4Q6PFF0 Cbr3-201ENSMUST00000039620 1170 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Scaf4Q6PFF0 Brd1-201ENSMUST00000088911 4702 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
Scaf4Q6PFF0 Usf2-201ENSMUST00000058860 2419 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Scaf4Q6PFF0 Kdm3b-201ENSMUST00000043775 6363 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Scaf4Q6PFF0 Barx2-201ENSMUST00000116615 1968 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Scaf4Q6PFF0 Actrt3-201ENSMUST00000047630 1961 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Scaf4Q6PFF0 Nrxn2-201ENSMUST00000077182 6059 ntAPPRIS ALT2 TSL 5 BASIC19.6■□□□□ 0.73
Scaf4Q6PFF0 Zfp692-202ENSMUST00000153510 1887 ntAPPRIS P1 TSL 5 BASIC19.6■□□□□ 0.73
Scaf4Q6PFF0 Tmem238-201ENSMUST00000168578 1375 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Scaf4Q6PFF0 Ooep-201ENSMUST00000034900 2138 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Scaf4Q6PFF0 Trim3-203ENSMUST00000106791 2466 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
Scaf4Q6PFF0 Rab5a-201ENSMUST00000017975 2357 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Scaf4Q6PFF0 Fgf8-206ENSMUST00000111928 1056 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
Scaf4Q6PFF0 Gm10399-202ENSMUST00000202768 748 ntBASIC19.6■□□□□ 0.73
Scaf4Q6PFF0 Acvrl1-202ENSMUST00000117984 1852 ntAPPRIS P1 TSL 5 BASIC19.6■□□□□ 0.73
Scaf4Q6PFF0 Cacnb1-202ENSMUST00000092736 1880 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
Scaf4Q6PFF0 Pde1b-201ENSMUST00000023132 3218 ntAPPRIS P2 TSL 1 (best) BASIC19.6■□□□□ 0.73
Scaf4Q6PFF0 Prmt1-202ENSMUST00000107843 1508 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
Scaf4Q6PFF0 Flot2-203ENSMUST00000100784 2699 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
Scaf4Q6PFF0 Dalrd3-201ENSMUST00000019183 1746 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Scaf4Q6PFF0 Chtop-202ENSMUST00000049937 2012 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Scaf4Q6PFF0 Sac3d1-201ENSMUST00000113533 1374 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Scaf4Q6PFF0 Dexi-201ENSMUST00000038281 1389 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Scaf4Q6PFF0 Neurl4-213ENSMUST00000177476 4952 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
Scaf4Q6PFF0 Elf2-212ENSMUST00000194641 5919 ntAPPRIS P3 TSL 5 BASIC19.59■□□□□ 0.73
Scaf4Q6PFF0 Fam89b-203ENSMUST00000161368 1160 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
Scaf4Q6PFF0 Gm27151-202ENSMUST00000185015 1145 ntTSL 5 BASIC19.59■□□□□ 0.73
Scaf4Q6PFF0 Pgls-201ENSMUST00000034264 893 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Scaf4Q6PFF0 Cited4-201ENSMUST00000094814 1249 ntAPPRIS P1 BASIC19.59■□□□□ 0.73
Scaf4Q6PFF0 Slc3a2-201ENSMUST00000010239 1819 ntAPPRIS P3 TSL 1 (best) BASIC19.59■□□□□ 0.73
Scaf4Q6PFF0 Hunk-201ENSMUST00000065856 5009 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Scaf4Q6PFF0 Foxd1-201ENSMUST00000105098 5064 ntAPPRIS P1 BASIC19.59■□□□□ 0.73
Scaf4Q6PFF0 Bmpr1b-202ENSMUST00000098568 1910 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Scaf4Q6PFF0 Mtmr9-201ENSMUST00000058679 2570 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
Scaf4Q6PFF0 Ung-201ENSMUST00000031587 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.73
Scaf4Q6PFF0 Gm2415-202ENSMUST00000134688 401 ntTSL 2 BASIC19.58■□□□□ 0.72
Scaf4Q6PFF0 E4f1-205ENSMUST00000226941 2642 ntAPPRIS ALT2 BASIC19.58■□□□□ 0.72
Scaf4Q6PFF0 Gfra4-206ENSMUST00000110240 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.72
Retrieved 100 of 76,532 protein–RNA pairs in 13.8 ms