Protein–RNA interactions for Protein: Q6P7W2

Shkbp1, SH3KBP1-binding protein 1, mousemouse

Predictions only

Length 704 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shkbp1Q6P7W2 Sdhaf1-201ENSMUST00000098586 2490 ntAPPRIS P1 BASIC20.89■□□□□ 0.94
Shkbp1Q6P7W2 Msl1-203ENSMUST00000107485 2091 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
Shkbp1Q6P7W2 Ddah2-201ENSMUST00000007255 1342 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Shkbp1Q6P7W2 Gm4553-201ENSMUST00000168049 714 ntAPPRIS ALT2 BASIC20.89■□□□□ 0.93
Shkbp1Q6P7W2 Gpx1-202ENSMUST00000191997 787 ntTSL 2 BASIC20.89■□□□□ 0.93
Shkbp1Q6P7W2 Gpx1-201ENSMUST00000082429 1072 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Shkbp1Q6P7W2 Setd4-202ENSMUST00000113951 1826 ntAPPRIS P1 TSL 5 BASIC20.89■□□□□ 0.93
Shkbp1Q6P7W2 Fah-201ENSMUST00000032865 1585 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Shkbp1Q6P7W2 Phf12-202ENSMUST00000108360 3047 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
Shkbp1Q6P7W2 Zfp639-202ENSMUST00000191783 1988 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Shkbp1Q6P7W2 Lzts2-202ENSMUST00000178087 2773 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Shkbp1Q6P7W2 Cck-203ENSMUST00000215228 783 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Shkbp1Q6P7W2 Gnb5-206ENSMUST00000215875 2105 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Shkbp1Q6P7W2 Krtap5-3-202ENSMUST00000187512 1652 ntAPPRIS P2 BASIC20.88■□□□□ 0.93
Shkbp1Q6P7W2 Klhl22-201ENSMUST00000117192 2754 ntTSL 5 BASIC20.88■□□□□ 0.93
Shkbp1Q6P7W2 Sult4a1-201ENSMUST00000082365 2383 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Shkbp1Q6P7W2 Pi4kb-207ENSMUST00000167008 1962 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
Shkbp1Q6P7W2 Cotl1-202ENSMUST00000168698 1520 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Shkbp1Q6P7W2 0610038B21Rik-202ENSMUST00000184762 1524 ntBASIC20.88■□□□□ 0.93
Shkbp1Q6P7W2 Gm26995-201ENSMUST00000182216 1306 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
Shkbp1Q6P7W2 6230400D17Rik-202ENSMUST00000224976 1019 ntBASIC20.87■□□□□ 0.93
Shkbp1Q6P7W2 Gm9988-201ENSMUST00000069786 435 ntBASIC20.87■□□□□ 0.93
Shkbp1Q6P7W2 Bcl11b-202ENSMUST00000109887 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
Shkbp1Q6P7W2 Cep78-201ENSMUST00000047704 2548 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Shkbp1Q6P7W2 Klc3-204ENSMUST00000108459 1849 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
Shkbp1Q6P7W2 Gm14281-201ENSMUST00000121700 1294 ntBASIC20.86■□□□□ 0.93
Shkbp1Q6P7W2 Ccdc85b-201ENSMUST00000179549 609 ntAPPRIS P1 BASIC20.86■□□□□ 0.93
Shkbp1Q6P7W2 Stum-202ENSMUST00000179826 601 ntAPPRIS ALT1 TSL 5 BASIC20.86■□□□□ 0.93
Shkbp1Q6P7W2 Neurl1b-203ENSMUST00000183077 1084 ntTSL 5 BASIC20.86■□□□□ 0.93
Shkbp1Q6P7W2 0610010K14Rik-202ENSMUST00000021181 779 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
Shkbp1Q6P7W2 Igfbp6-201ENSMUST00000023807 1112 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Shkbp1Q6P7W2 Arl10-201ENSMUST00000026988 1046 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Shkbp1Q6P7W2 Oxld1-201ENSMUST00000044007 813 ntAPPRIS P2 TSL 1 (best) BASIC20.86■□□□□ 0.93
Shkbp1Q6P7W2 Maf1-205ENSMUST00000160853 1651 ntAPPRIS P2 TSL 1 (best) BASIC20.86■□□□□ 0.93
Shkbp1Q6P7W2 Grap-201ENSMUST00000004959 1662 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Shkbp1Q6P7W2 5730488B01Rik-201ENSMUST00000192889 2311 ntBASIC20.86■□□□□ 0.93
Shkbp1Q6P7W2 Htra2-203ENSMUST00000113963 1629 ntTSL 5 BASIC20.86■□□□□ 0.93
Shkbp1Q6P7W2 Zdhhc4-201ENSMUST00000001900 1364 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Shkbp1Q6P7W2 Hpca-201ENSMUST00000030572 1525 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Shkbp1Q6P7W2 Nab1-201ENSMUST00000069792 3874 ntAPPRIS P2 TSL 1 (best) BASIC20.85■□□□□ 0.93
Shkbp1Q6P7W2 Mrpl52-204ENSMUST00000199195 463 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
Shkbp1Q6P7W2 Gm11175-202ENSMUST00000211380 408 ntTSL 3 BASIC20.85■□□□□ 0.93
Shkbp1Q6P7W2 Cmtm7-204ENSMUST00000216760 665 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
Shkbp1Q6P7W2 Faim-201ENSMUST00000035038 1019 ntAPPRIS P3 TSL 1 (best) BASIC20.85■□□□□ 0.93
Shkbp1Q6P7W2 Rasl10a-201ENSMUST00000037218 1110 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Shkbp1Q6P7W2 Hist1h2ao-201ENSMUST00000091745 480 ntAPPRIS P1 BASIC20.85■□□□□ 0.93
Shkbp1Q6P7W2 Fam60a-202ENSMUST00000081956 2737 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Shkbp1Q6P7W2 Gm26507-201ENSMUST00000181838 1410 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
Shkbp1Q6P7W2 Mapk11-201ENSMUST00000088823 2440 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Shkbp1Q6P7W2 Dmtn-209ENSMUST00000228295 2572 ntBASIC20.85■□□□□ 0.93
Shkbp1Q6P7W2 Rsrc1-202ENSMUST00000065047 2736 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
Shkbp1Q6P7W2 Rhob-201ENSMUST00000067384 2349 ntAPPRIS P1 BASIC20.84■□□□□ 0.93
Shkbp1Q6P7W2 Rhov-201ENSMUST00000037360 1703 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Shkbp1Q6P7W2 Sebox-202ENSMUST00000125670 1300 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
Shkbp1Q6P7W2 Rab28-203ENSMUST00000201422 1697 ntTSL 5 BASIC20.84■□□□□ 0.93
Shkbp1Q6P7W2 Trim9-208ENSMUST00000221370 2393 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
Shkbp1Q6P7W2 1810059C17Rik-201ENSMUST00000125173 487 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
Shkbp1Q6P7W2 Gm15298-201ENSMUST00000145916 1212 ntTSL 5 BASIC20.84■□□□□ 0.93
Shkbp1Q6P7W2 Dpyd-204ENSMUST00000149101 531 ntTSL 3 BASIC20.84■□□□□ 0.93
Shkbp1Q6P7W2 Gadd45b-201ENSMUST00000015456 1284 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Shkbp1Q6P7W2 Nars2-202ENSMUST00000107159 1777 ntTSL 5 BASIC20.84■□□□□ 0.93
Shkbp1Q6P7W2 Acss2-203ENSMUST00000103142 2145 ntTSL 5 BASIC20.84■□□□□ 0.93
Shkbp1Q6P7W2 Camsap1-212ENSMUST00000183461 5090 ntAPPRIS ALT2 TSL 5 BASIC20.84■□□□□ 0.93
Shkbp1Q6P7W2 Galr2-201ENSMUST00000055872 1940 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Shkbp1Q6P7W2 Gm29394-202ENSMUST00000176935 1326 ntAPPRIS P5 TSL 2 BASIC20.83■□□□□ 0.93
Shkbp1Q6P7W2 Kif1bp-201ENSMUST00000065887 2472 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
Shkbp1Q6P7W2 Rhbdd3-201ENSMUST00000036320 1790 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
Shkbp1Q6P7W2 Zfp467-201ENSMUST00000101443 599 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
Shkbp1Q6P7W2 Kctd17-206ENSMUST00000162517 901 ntAPPRIS P4 TSL 1 (best) BASIC20.83■□□□□ 0.93
Shkbp1Q6P7W2 Kctd17-209ENSMUST00000166142 826 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.93
Shkbp1Q6P7W2 1700081N11Rik-202ENSMUST00000221447 569 ntTSL 3 BASIC20.83■□□□□ 0.93
Shkbp1Q6P7W2 Cadm1-201ENSMUST00000034581 1254 ntAPPRIS ALT1 TSL 1 (best) BASIC20.83■□□□□ 0.93
Shkbp1Q6P7W2 Ypel1-201ENSMUST00000035682 3322 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
Shkbp1Q6P7W2 Hpse-202ENSMUST00000112908 1958 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.92
Shkbp1Q6P7W2 Slc9a7-201ENSMUST00000072451 2512 ntAPPRIS P2 TSL 1 (best) BASIC20.82■□□□□ 0.92
Shkbp1Q6P7W2 Nipsnap2-205ENSMUST00000186265 1600 ntAPPRIS P1 TSL 2 BASIC20.82■□□□□ 0.92
Shkbp1Q6P7W2 D030056L22Rik-201ENSMUST00000055792 1631 ntAPPRIS P2 TSL 1 (best) BASIC20.82■□□□□ 0.92
Shkbp1Q6P7W2 Zbtb7a-202ENSMUST00000117956 1863 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Shkbp1Q6P7W2 Hdhd2-206ENSMUST00000145634 1585 ntAPPRIS P1 TSL 5 BASIC20.82■□□□□ 0.92
Shkbp1Q6P7W2 Whrn-204ENSMUST00000095037 2419 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
Shkbp1Q6P7W2 Fam241b-209ENSMUST00000142821 1283 ntAPPRIS P1 TSL 5 BASIC20.82■□□□□ 0.92
Shkbp1Q6P7W2 Gm27801-201ENSMUST00000184174 223 ntBASIC20.82■□□□□ 0.92
Shkbp1Q6P7W2 Ccdc84-211ENSMUST00000217270 681 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
Shkbp1Q6P7W2 Cox7c-202ENSMUST00000078764 433 ntTSL 2 BASIC20.82■□□□□ 0.92
Shkbp1Q6P7W2 Gab2-202ENSMUST00000206791 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
Shkbp1Q6P7W2 Fgfrl1-202ENSMUST00000112560 2318 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
Shkbp1Q6P7W2 Gm10571-201ENSMUST00000097869 1638 ntBASIC20.82■□□□□ 0.92
Shkbp1Q6P7W2 Prdm13-201ENSMUST00000076206 2993 ntAPPRIS ALT2 TSL 2 BASIC20.82■□□□□ 0.92
Shkbp1Q6P7W2 Rem2-202ENSMUST00000164766 1884 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Shkbp1Q6P7W2 Plk5-202ENSMUST00000105351 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
Shkbp1Q6P7W2 Plk5-201ENSMUST00000039836 2112 ntAPPRIS P3 TSL 2 BASIC20.81■□□□□ 0.92
Shkbp1Q6P7W2 Mfap4-201ENSMUST00000040522 939 ntAPPRIS ALT2 TSL 2 BASIC20.81■□□□□ 0.92
Shkbp1Q6P7W2 Ubxn2a-203ENSMUST00000142867 2146 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Shkbp1Q6P7W2 Gm12504-201ENSMUST00000120860 2231 ntBASIC20.81■□□□□ 0.92
Shkbp1Q6P7W2 Spint1-202ENSMUST00000110816 1913 ntAPPRIS P1 TSL 5 BASIC20.8■□□□□ 0.92
Shkbp1Q6P7W2 Nfkbid-203ENSMUST00000108176 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
Shkbp1Q6P7W2 Ung-201ENSMUST00000031587 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
Shkbp1Q6P7W2 Gm7102-201ENSMUST00000180168 1624 ntAPPRIS P1 BASIC20.8■□□□□ 0.92
Shkbp1Q6P7W2 Gfra4-205ENSMUST00000110239 810 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
Shkbp1Q6P7W2 Zcrb1-208ENSMUST00000162160 850 ntAPPRIS ALT1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Retrieved 100 of 76,532 protein–RNA pairs in 25.1 ms