Protein–RNA interactions for Protein: Q63870

Col7a1, Collagen alpha-1(VII) chain, mousemouse

Predictions only

Length 2,944 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col7a1Q63870 Ndrg2-202ENSMUST00000111632 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC17■□□□□ 0.31
Col7a1Q63870 Ankrd39-202ENSMUST00000194894 664 ntTSL 1 (best) BASIC17■□□□□ 0.31
Col7a1Q63870 Pdcd2-201ENSMUST00000054450 1120 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Col7a1Q63870 Cdc20-201ENSMUST00000006565 1793 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Col7a1Q63870 Rfxap-201ENSMUST00000044373 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
Col7a1Q63870 Hgh1-201ENSMUST00000023213 1959 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Col7a1Q63870 Ptx3-201ENSMUST00000029421 1898 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Col7a1Q63870 1110004F10Rik-202ENSMUST00000106607 1153 ntTSL 1 (best) BASIC17■□□□□ 0.31
Col7a1Q63870 Lrrc24-201ENSMUST00000036247 1758 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
Col7a1Q63870 Gm5643-201ENSMUST00000117081 966 ntBASIC16.99■□□□□ 0.31
Col7a1Q63870 Ube2i-213ENSMUST00000174031 824 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Col7a1Q63870 Gm42477-201ENSMUST00000202427 469 ntTSL 3 BASIC16.99■□□□□ 0.31
Col7a1Q63870 1700017B05Rik-204ENSMUST00000215298 1023 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
Col7a1Q63870 a-201ENSMUST00000029123 731 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Col7a1Q63870 Slc7a6os-201ENSMUST00000035925 1246 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Col7a1Q63870 Hpca-204ENSMUST00000116444 1847 ntAPPRIS P1 TSL 5 BASIC16.99■□□□□ 0.31
Col7a1Q63870 Zdhhc4-201ENSMUST00000001900 1364 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Col7a1Q63870 Ccdc9-202ENSMUST00000118976 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
Col7a1Q63870 Sfr1-201ENSMUST00000099353 1583 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Col7a1Q63870 Prlh-201ENSMUST00000166281 276 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Col7a1Q63870 Gm19610-201ENSMUST00000202894 408 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
Col7a1Q63870 Fam50b-201ENSMUST00000039605 1229 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Col7a1Q63870 Stac3-201ENSMUST00000035839 1790 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Col7a1Q63870 Uqcrfs1-201ENSMUST00000042834 1363 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Col7a1Q63870 Gm21863-201ENSMUST00000179133 336 ntAPPRIS P1 BASIC16.98■□□□□ 0.31
Col7a1Q63870 C230096K16Rik-201ENSMUST00000198074 1722 ntBASIC16.98■□□□□ 0.31
Col7a1Q63870 Hnrnpab-202ENSMUST00000101249 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC16.98■□□□□ 0.31
Col7a1Q63870 Ramp2-202ENSMUST00000122006 899 ntTSL 2 BASIC16.98■□□□□ 0.31
Col7a1Q63870 Ccnd2-202ENSMUST00000201066 983 ntTSL 2 BASIC16.98■□□□□ 0.31
Col7a1Q63870 Snrpd3-203ENSMUST00000220229 442 ntTSL 3 BASIC16.98■□□□□ 0.31
Col7a1Q63870 Arhgef33-211ENSMUST00000225658 473 ntBASIC16.98■□□□□ 0.31
Col7a1Q63870 Mgst3-201ENSMUST00000028005 1097 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Col7a1Q63870 Snta1-201ENSMUST00000028991 2125 ntAPPRIS ALT2 TSL 1 (best) BASIC16.98■□□□□ 0.31
Col7a1Q63870 Dbndd1-202ENSMUST00000176286 1344 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
Col7a1Q63870 Arl4aos-201ENSMUST00000135883 748 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
Col7a1Q63870 2210408F21Rik-213ENSMUST00000153057 652 ntTSL 3 BASIC16.97■□□□□ 0.31
Col7a1Q63870 Dusp26-201ENSMUST00000036631 1938 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Col7a1Q63870 Ovol2-201ENSMUST00000037423 1539 ntAPPRIS P4 TSL 1 (best) BASIC16.97■□□□□ 0.31
Col7a1Q63870 Cacnb1-205ENSMUST00000107562 1745 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
Col7a1Q63870 Gm6211-202ENSMUST00000167849 925 ntBASIC16.97■□□□□ 0.31
Col7a1Q63870 Slc22a17-208ENSMUST00000228119 2348 ntAPPRIS P1 BASIC16.97■□□□□ 0.31
Col7a1Q63870 Tfeb-202ENSMUST00000086932 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
Col7a1Q63870 Casp6-201ENSMUST00000029626 1456 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Col7a1Q63870 1700030C10Rik-203ENSMUST00000189625 1735 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
Col7a1Q63870 E130208F15Rik-201ENSMUST00000098585 1733 ntAPPRIS P1 BASIC16.97■□□□□ 0.31
Col7a1Q63870 Lrrc59-201ENSMUST00000021239 2837 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Col7a1Q63870 Gm37055-201ENSMUST00000191866 133 ntBASIC16.97■□□□□ 0.31
Col7a1Q63870 Zfp579-201ENSMUST00000108572 2157 ntAPPRIS P1 TSL 2 BASIC16.96■□□□□ 0.31
Col7a1Q63870 Samd13-205ENSMUST00000197989 591 ntTSL 5 BASIC16.96■□□□□ 0.31
Col7a1Q63870 Lig3-204ENSMUST00000131537 1782 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
Col7a1Q63870 Lig3-209ENSMUST00000173009 1785 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
Col7a1Q63870 Smim1-205ENSMUST00000131325 842 ntTSL 5 BASIC16.96■□□□□ 0.3
Col7a1Q63870 Rprm-201ENSMUST00000100089 1460 ntAPPRIS P1 BASIC16.96■□□□□ 0.3
Col7a1Q63870 Gnb5-206ENSMUST00000215875 2105 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Col7a1Q63870 Qdpr-208ENSMUST00000197946 1206 ntTSL 5 BASIC16.95■□□□□ 0.3
Col7a1Q63870 Igfbp6-201ENSMUST00000023807 1112 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Col7a1Q63870 Birc5-201ENSMUST00000081387 947 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Col7a1Q63870 Npw-201ENSMUST00000095544 638 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
Col7a1Q63870 AI314180-201ENSMUST00000055822 1478 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
Col7a1Q63870 Ebf4-203ENSMUST00000110288 2982 ntAPPRIS ALT2 TSL 5 BASIC16.95■□□□□ 0.3
Col7a1Q63870 Rfng-201ENSMUST00000026156 2118 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Col7a1Q63870 P3h4-201ENSMUST00000066489 2178 ntAPPRIS P2 TSL 1 (best) BASIC16.95■□□□□ 0.3
Col7a1Q63870 Specc1-206ENSMUST00000201015 1789 ntAPPRIS ALT2 TSL 5 BASIC16.95■□□□□ 0.3
Col7a1Q63870 Tspan2os-201ENSMUST00000146624 590 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
Col7a1Q63870 Gm20403-201ENSMUST00000173803 372 ntAPPRIS P1 BASIC16.95■□□□□ 0.3
Col7a1Q63870 Gprc5b-204ENSMUST00000208394 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
Col7a1Q63870 E330009J07Rik-201ENSMUST00000039008 1949 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
Col7a1Q63870 Idnk-202ENSMUST00000109868 1462 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
Col7a1Q63870 Gm8909-202ENSMUST00000097335 1182 ntAPPRIS ALT2 TSL 5 BASIC16.94■□□□□ 0.3
Col7a1Q63870 Spsb3-203ENSMUST00000117890 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
Col7a1Q63870 4930519A11Rik-201ENSMUST00000181381 1523 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
Col7a1Q63870 Tmem230-202ENSMUST00000110163 1551 ntAPPRIS P1 TSL 3 BASIC16.94■□□□□ 0.3
Col7a1Q63870 Tomm40-201ENSMUST00000032555 1646 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Col7a1Q63870 Coa6-201ENSMUST00000059093 747 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Col7a1Q63870 AC153890.1-201ENSMUST00000220021 2469 ntBASIC16.94■□□□□ 0.3
Col7a1Q63870 Slc36a1-201ENSMUST00000020499 1950 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Col7a1Q63870 4930554C24Rik-202ENSMUST00000216019 1159 ntTSL 5 BASIC16.93■□□□□ 0.3
Col7a1Q63870 AC122465.1-201ENSMUST00000220813 1209 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
Col7a1Q63870 Tmem121-201ENSMUST00000058491 1574 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Col7a1Q63870 Mapk12-201ENSMUST00000088827 1889 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Col7a1Q63870 Klhl25-203ENSMUST00000205612 1343 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
Col7a1Q63870 Gm10655-201ENSMUST00000098658 1397 ntBASIC16.93■□□□□ 0.3
Col7a1Q63870 Nrn1-202ENSMUST00000122286 691 ntTSL 3 BASIC16.93■□□□□ 0.3
Col7a1Q63870 Exosc4-201ENSMUST00000059045 1796 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Col7a1Q63870 Macrod2-202ENSMUST00000078027 1669 ntAPPRIS P2 TSL 5 BASIC16.93■□□□□ 0.3
Col7a1Q63870 Arl4d-201ENSMUST00000039388 1382 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Col7a1Q63870 Nrl-203ENSMUST00000178694 1928 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Col7a1Q63870 Rpl26-202ENSMUST00000101014 657 ntAPPRIS ALT1 TSL 5 BASIC16.93■□□□□ 0.3
Col7a1Q63870 Smim12-201ENSMUST00000142029 1022 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Col7a1Q63870 Rab42-201ENSMUST00000040411 761 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Col7a1Q63870 Olfr322-201ENSMUST00000072030 984 ntAPPRIS P1 BASIC16.93■□□□□ 0.3
Col7a1Q63870 Odf1-201ENSMUST00000081966 1105 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Col7a1Q63870 Esx1-202ENSMUST00000113066 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
Col7a1Q63870 Serf1-204ENSMUST00000151821 570 ntTSL 2 BASIC16.92■□□□□ 0.3
Col7a1Q63870 Gm6420-201ENSMUST00000193885 723 ntBASIC16.92■□□□□ 0.3
Col7a1Q63870 Gm9987-201ENSMUST00000069768 567 ntBASIC16.92■□□□□ 0.3
Col7a1Q63870 Tinagl1-209ENSMUST00000175992 1847 ntAPPRIS ALT2 TSL 5 BASIC16.92■□□□□ 0.3
Col7a1Q63870 Gm2788-202ENSMUST00000147173 1390 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
Col7a1Q63870 2410022M11Rik-201ENSMUST00000186474 1911 ntBASIC16.92■□□□□ 0.3
Col7a1Q63870 Shb-201ENSMUST00000061986 2244 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Retrieved 100 of 76,532 protein–RNA pairs in 17.1 ms