Protein–RNA interactions for Protein: Q3UWA4

Trim40, Tripartite motif-containing protein 40, mousemouse

Predictions only

Length 246 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim40Q3UWA4 Gm12366-201ENSMUST00000121722 873 ntBASIC18.62■□□□□ 0.57
Trim40Q3UWA4 Rps2-206ENSMUST00000146867 962 ntTSL 5 BASIC18.62■□□□□ 0.57
Trim40Q3UWA4 Arhgap39-204ENSMUST00000176219 542 ntTSL 5 BASIC18.62■□□□□ 0.57
Trim40Q3UWA4 Serp2-201ENSMUST00000064517 748 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Trim40Q3UWA4 Rps2-ps10-201ENSMUST00000076842 879 ntBASIC18.62■□□□□ 0.57
Trim40Q3UWA4 Gm5786-201ENSMUST00000085368 882 ntBASIC18.62■□□□□ 0.57
Trim40Q3UWA4 Tmem250-ps-201ENSMUST00000133808 2483 ntTSL 2 BASIC18.62■□□□□ 0.57
Trim40Q3UWA4 Mprip-201ENSMUST00000066330 7765 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
Trim40Q3UWA4 Auh-203ENSMUST00000119311 2627 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
Trim40Q3UWA4 Abhd13-202ENSMUST00000139793 5191 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
Trim40Q3UWA4 Rhbdd3-201ENSMUST00000036320 1790 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
Trim40Q3UWA4 Ubl7-208ENSMUST00000216841 1426 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
Trim40Q3UWA4 Fam50b-202ENSMUST00000221037 1345 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Trim40Q3UWA4 Klhl15-202ENSMUST00000113908 1235 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
Trim40Q3UWA4 Gm10420-201ENSMUST00000121713 882 ntBASIC18.61■□□□□ 0.57
Trim40Q3UWA4 Mir6538-201ENSMUST00000183713 110 ntBASIC18.61■□□□□ 0.57
Trim40Q3UWA4 4933429H19Rik-202ENSMUST00000187361 995 ntBASIC18.61■□□□□ 0.57
Trim40Q3UWA4 1700020L24Rik-201ENSMUST00000037378 949 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Trim40Q3UWA4 Mrpl23-201ENSMUST00000038675 692 ntAPPRIS P2 TSL 1 (best) BASIC18.61■□□□□ 0.57
Trim40Q3UWA4 Fam105a-202ENSMUST00000226145 2950 ntAPPRIS P1 BASIC18.61■□□□□ 0.57
Trim40Q3UWA4 Cbln2-202ENSMUST00000122079 2549 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Trim40Q3UWA4 Dtx4-201ENSMUST00000045521 5765 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Trim40Q3UWA4 Foxf1-201ENSMUST00000181504 2415 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Trim40Q3UWA4 Otud5-203ENSMUST00000115666 2471 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
Trim40Q3UWA4 Zc3h6-201ENSMUST00000110319 1484 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
Trim40Q3UWA4 Enah-203ENSMUST00000111025 3385 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
Trim40Q3UWA4 Gas1-202ENSMUST00000223933 1155 ntAPPRIS P2 BASIC18.6■□□□□ 0.57
Trim40Q3UWA4 H1fx-201ENSMUST00000056403 1217 ntAPPRIS P1 BASIC18.6■□□□□ 0.57
Trim40Q3UWA4 Gpatch3-201ENSMUST00000030662 2004 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Trim40Q3UWA4 Dusp26-201ENSMUST00000036631 1938 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Trim40Q3UWA4 Phospho1-201ENSMUST00000054173 1910 ntAPPRIS P1 TSL 2 BASIC18.6■□□□□ 0.57
Trim40Q3UWA4 Fgfrl1-202ENSMUST00000112560 2318 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
Trim40Q3UWA4 Lpcat2-205ENSMUST00000210099 2179 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
Trim40Q3UWA4 Bcas2-201ENSMUST00000005830 1467 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Trim40Q3UWA4 Gls-202ENSMUST00000114510 5596 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
Trim40Q3UWA4 Nfkbil1-201ENSMUST00000048994 1447 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Trim40Q3UWA4 Egln1-201ENSMUST00000034469 3594 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Trim40Q3UWA4 Ints6-201ENSMUST00000053959 4993 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Trim40Q3UWA4 Slc35b2-201ENSMUST00000041353 2326 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
Trim40Q3UWA4 D130020L05Rik-203ENSMUST00000221044 803 ntTSL 2 BASIC18.59■□□□□ 0.57
Trim40Q3UWA4 Gm5602-201ENSMUST00000146366 1763 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
Trim40Q3UWA4 Rab28-203ENSMUST00000201422 1697 ntTSL 5 BASIC18.59■□□□□ 0.57
Trim40Q3UWA4 Hpca-209ENSMUST00000164649 1626 ntAPPRIS P1 TSL 2 BASIC18.59■□□□□ 0.57
Trim40Q3UWA4 Cep170b-202ENSMUST00000101018 6641 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Trim40Q3UWA4 Dlg1-202ENSMUST00000064477 4663 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
Trim40Q3UWA4 Nphp3-201ENSMUST00000035167 5899 ntAPPRIS P2 TSL 1 (best) BASIC18.59■□□□□ 0.57
Trim40Q3UWA4 Cnpy3-201ENSMUST00000059844 1908 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Trim40Q3UWA4 Ebf3-201ENSMUST00000033378 4838 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.57
Trim40Q3UWA4 Def6-201ENSMUST00000002327 2277 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
Trim40Q3UWA4 Ehmt2-203ENSMUST00000097342 3934 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.57
Trim40Q3UWA4 Ank1-207ENSMUST00000118733 8201 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.57
Trim40Q3UWA4 Clk3-201ENSMUST00000065330 2496 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
Trim40Q3UWA4 Nt5m-201ENSMUST00000102695 1306 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
Trim40Q3UWA4 AA543186-201ENSMUST00000180841 1696 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
Trim40Q3UWA4 Gm43573-201ENSMUST00000196445 570 ntTSL 5 BASIC18.58■□□□□ 0.56
Trim40Q3UWA4 Cpne2-201ENSMUST00000048653 2342 ntAPPRIS P2 TSL 1 (best) BASIC18.58■□□□□ 0.56
Trim40Q3UWA4 Hhipl1-201ENSMUST00000021685 5174 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Trim40Q3UWA4 Clint1-202ENSMUST00000109261 3365 ntAPPRIS ALT2 TSL 5 BASIC18.58■□□□□ 0.56
Trim40Q3UWA4 Csf2ra-201ENSMUST00000076046 1849 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Trim40Q3UWA4 E4f1-205ENSMUST00000226941 2642 ntAPPRIS ALT2 BASIC18.57■□□□□ 0.56
Trim40Q3UWA4 Rnf146-203ENSMUST00000160372 1948 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Trim40Q3UWA4 Chtop-204ENSMUST00000107342 2411 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
Trim40Q3UWA4 Mbd3-203ENSMUST00000105348 1222 ntTSL 5 BASIC18.57■□□□□ 0.56
Trim40Q3UWA4 Eif2ak4-207ENSMUST00000110877 2134 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
Trim40Q3UWA4 Smagp-201ENSMUST00000066068 1132 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Trim40Q3UWA4 Cdk4-201ENSMUST00000006911 2053 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Trim40Q3UWA4 Laptm4a-201ENSMUST00000020909 1773 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Trim40Q3UWA4 Gm8098-201ENSMUST00000146985 1499 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
Trim40Q3UWA4 Lamp1-201ENSMUST00000033824 2229 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Trim40Q3UWA4 Zfyve9-202ENSMUST00000106657 6459 ntAPPRIS P2 TSL 5 BASIC18.56■□□□□ 0.56
Trim40Q3UWA4 Stk11-201ENSMUST00000003152 2566 ntAPPRIS P3 TSL 1 (best) BASIC18.56■□□□□ 0.56
Trim40Q3UWA4 Podxl-201ENSMUST00000026698 5379 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Trim40Q3UWA4 Uck1-201ENSMUST00000002625 2005 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Trim40Q3UWA4 Becn1-216ENSMUST00000170502 725 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
Trim40Q3UWA4 Ppp1r21-201ENSMUST00000038551 3141 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Trim40Q3UWA4 Azi2-205ENSMUST00000133580 2156 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Trim40Q3UWA4 Atf1-201ENSMUST00000023769 2365 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Trim40Q3UWA4 Spata6-213ENSMUST00000153746 1444 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
Trim40Q3UWA4 Stx2-201ENSMUST00000031378 2939 ntAPPRIS P3 TSL 1 (best) BASIC18.56■□□□□ 0.56
Trim40Q3UWA4 Cacul1-203ENSMUST00000166712 5700 ntAPPRIS ALT2 TSL 5 BASIC18.55■□□□□ 0.56
Trim40Q3UWA4 Matr3-209ENSMUST00000188275 1951 ntTSL 5 BASIC18.55■□□□□ 0.56
Trim40Q3UWA4 Gatad2a-202ENSMUST00000116463 3363 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
Trim40Q3UWA4 Klf1-201ENSMUST00000067060 1530 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Trim40Q3UWA4 Eif4e2-204ENSMUST00000113231 1119 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
Trim40Q3UWA4 Aldoa-214ENSMUST00000207534 741 ntAPPRIS P1 TSL 5 BASIC18.55■□□□□ 0.56
Trim40Q3UWA4 AC161180.1-201ENSMUST00000223439 933 ntAPPRIS P1 BASIC18.55■□□□□ 0.56
Trim40Q3UWA4 Sh2b3-203ENSMUST00000118580 2393 ntAPPRIS ALT2 TSL 2 BASIC18.55■□□□□ 0.56
Trim40Q3UWA4 2310022A10Rik-205ENSMUST00000187960 1989 ntAPPRIS ALT2 TSL 5 BASIC18.55■□□□□ 0.56
Trim40Q3UWA4 Mtus2-205ENSMUST00000110515 1792 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Trim40Q3UWA4 Zmym3-202ENSMUST00000117637 1593 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
Trim40Q3UWA4 Smtnl2-201ENSMUST00000050226 2624 ntAPPRIS P2 TSL 1 (best) BASIC18.54■□□□□ 0.56
Trim40Q3UWA4 Wdsub1-201ENSMUST00000028368 2072 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Trim40Q3UWA4 Tsen54-202ENSMUST00000106481 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
Trim40Q3UWA4 Dleu7-201ENSMUST00000063169 1314 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Trim40Q3UWA4 Paxip1-201ENSMUST00000002291 5850 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Trim40Q3UWA4 Chpt1-203ENSMUST00000117440 4863 ntAPPRIS ALT2 TSL 5 BASIC18.54■□□□□ 0.56
Trim40Q3UWA4 Ppp2r3d-202ENSMUST00000180270 450 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
Trim40Q3UWA4 Sds-204ENSMUST00000201684 1288 ntAPPRIS P1 TSL 5 BASIC18.54■□□□□ 0.56
Trim40Q3UWA4 Tmem44-204ENSMUST00000140402 2405 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Trim40Q3UWA4 Rtca-201ENSMUST00000000348 1594 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Retrieved 100 of 76,532 protein–RNA pairs in 29 ms