Protein–RNA interactions for Protein: Q0EEE2

Ptchd3, Patched domain-containing protein 3, mousemouse

Predictions only

Length 906 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ptchd3Q0EEE2 Siglecf-206ENSMUST00000206299 2149 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
Ptchd3Q0EEE2 Hnrnpl-211ENSMUST00000174548 2679 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
Ptchd3Q0EEE2 Pdzd3-201ENSMUST00000034618 2193 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Ptchd3Q0EEE2 Samd10-201ENSMUST00000060173 2164 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Ptchd3Q0EEE2 Tbxa2r-201ENSMUST00000105325 1765 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Ptchd3Q0EEE2 Rasl11b-201ENSMUST00000051937 1812 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Ptchd3Q0EEE2 Fam98c-209ENSMUST00000164589 1293 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
Ptchd3Q0EEE2 Prpf19-201ENSMUST00000025642 2134 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Ptchd3Q0EEE2 Luc7l2-201ENSMUST00000057692 2702 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Ptchd3Q0EEE2 Smc6-201ENSMUST00000020931 5603 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Ptchd3Q0EEE2 Wdr41-202ENSMUST00000159647 2289 ntTSL 5 BASIC19.17■□□□□ 0.66
Ptchd3Q0EEE2 Wdr41-206ENSMUST00000167155 2289 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Ptchd3Q0EEE2 Gab1-201ENSMUST00000034150 4870 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Ptchd3Q0EEE2 Anapc5-208ENSMUST00000197719 2383 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
Ptchd3Q0EEE2 Nfkbil1-201ENSMUST00000048994 1447 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Ptchd3Q0EEE2 Prss50-201ENSMUST00000051097 1456 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Ptchd3Q0EEE2 Pus1-203ENSMUST00000086643 1868 ntAPPRIS P4 TSL 1 (best) BASIC19.16■□□□□ 0.66
Ptchd3Q0EEE2 Ank1-202ENSMUST00000084038 8147 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
Ptchd3Q0EEE2 Gm10232-201ENSMUST00000089221 720 ntBASIC19.16■□□□□ 0.66
Ptchd3Q0EEE2 Sptbn4-207ENSMUST00000172269 8737 ntAPPRIS ALT2 TSL 2 BASIC19.15■□□□□ 0.66
Ptchd3Q0EEE2 Gab2-201ENSMUST00000004622 6168 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
Ptchd3Q0EEE2 Dact3-201ENSMUST00000108493 2989 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Ptchd3Q0EEE2 Utp11-201ENSMUST00000030738 1603 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Ptchd3Q0EEE2 Lmtk3-204ENSMUST00000209617 5051 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
Ptchd3Q0EEE2 Fzd2-201ENSMUST00000057893 3663 ntAPPRIS P1 BASIC19.15■□□□□ 0.66
Ptchd3Q0EEE2 Qrich1-206ENSMUST00000193258 2291 ntTSL 2 BASIC19.15■□□□□ 0.66
Ptchd3Q0EEE2 Hopx-203ENSMUST00000120827 1217 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Ptchd3Q0EEE2 Pbx1-206ENSMUST00000176790 1828 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
Ptchd3Q0EEE2 1700034P13Rik-201ENSMUST00000181358 1343 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
Ptchd3Q0EEE2 Arfrp1-203ENSMUST00000127988 2447 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Ptchd3Q0EEE2 Foxj2-201ENSMUST00000003238 5283 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Ptchd3Q0EEE2 Tmem123-201ENSMUST00000052865 2907 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
Ptchd3Q0EEE2 Bend3-202ENSMUST00000167488 6337 ntAPPRIS P1 TSL 2 BASIC19.14■□□□□ 0.66
Ptchd3Q0EEE2 Pou2f2-210ENSMUST00000176408 1697 ntTSL 5 BASIC19.14■□□□□ 0.66
Ptchd3Q0EEE2 Gp1bb-202ENSMUST00000167388 1847 ntAPPRIS ALT2 TSL 2 BASIC19.14■□□□□ 0.65
Ptchd3Q0EEE2 Tmem238-201ENSMUST00000168578 1375 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Ptchd3Q0EEE2 Mgat4b-201ENSMUST00000041725 2429 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Ptchd3Q0EEE2 Tk2-205ENSMUST00000212275 1507 ntAPPRIS P1 TSL 2 BASIC19.14■□□□□ 0.65
Ptchd3Q0EEE2 Gramd1a-201ENSMUST00000001280 2713 ntAPPRIS P2 TSL 1 (best) BASIC19.14■□□□□ 0.65
Ptchd3Q0EEE2 Klc3-201ENSMUST00000047170 1901 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
Ptchd3Q0EEE2 Matn4-203ENSMUST00000109358 2056 ntTSL 5 BASIC19.13■□□□□ 0.65
Ptchd3Q0EEE2 Gjc2-201ENSMUST00000108790 2169 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Ptchd3Q0EEE2 Nudt19-201ENSMUST00000040962 2298 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Ptchd3Q0EEE2 Slc9a2-203ENSMUST00000192345 2507 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
Ptchd3Q0EEE2 Phf2os1-201ENSMUST00000123212 498 ntTSL 3 BASIC19.13■□□□□ 0.65
Ptchd3Q0EEE2 Gm9767-201ENSMUST00000041011 1193 ntAPPRIS P1 BASIC19.13■□□□□ 0.65
Ptchd3Q0EEE2 Xylt1-201ENSMUST00000032892 9020 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Ptchd3Q0EEE2 Sos2-206ENSMUST00000183277 4512 ntAPPRIS ALT2 TSL 5 BASIC19.13■□□□□ 0.65
Ptchd3Q0EEE2 Gfi1-203ENSMUST00000159164 2648 ntAPPRIS P3 TSL 1 (best) BASIC19.13■□□□□ 0.65
Ptchd3Q0EEE2 Agtpbp1-222ENSMUST00000171606 3037 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
Ptchd3Q0EEE2 Ralgps2-205ENSMUST00000185198 2229 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
Ptchd3Q0EEE2 Hoxc11-201ENSMUST00000001701 2021 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Ptchd3Q0EEE2 Kcnn4-202ENSMUST00000205428 1945 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Ptchd3Q0EEE2 Rp9-203ENSMUST00000215715 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
Ptchd3Q0EEE2 Psmg1-202ENSMUST00000117044 807 ntTSL 5 BASIC19.12■□□□□ 0.65
Ptchd3Q0EEE2 Nectin3-201ENSMUST00000023334 3062 ntAPPRIS P4 TSL 1 (best) BASIC19.12■□□□□ 0.65
Ptchd3Q0EEE2 Iars2-203ENSMUST00000110975 2801 ntTSL 5 BASIC19.12■□□□□ 0.65
Ptchd3Q0EEE2 Camk2b-201ENSMUST00000002817 1872 ntTSL 5 BASIC19.11■□□□□ 0.65
Ptchd3Q0EEE2 Rbm7-201ENSMUST00000170000 1773 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Ptchd3Q0EEE2 Spg7-209ENSMUST00000149248 2896 ntAPPRIS P2 TSL 1 (best) BASIC19.11■□□□□ 0.65
Ptchd3Q0EEE2 Pde7a-202ENSMUST00000099195 6298 ntAPPRIS ALT1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Ptchd3Q0EEE2 Zcchc24-201ENSMUST00000069180 4556 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Ptchd3Q0EEE2 Rapgef1-203ENSMUST00000102872 6402 ntAPPRIS P3 TSL 1 (best) BASIC19.11■□□□□ 0.65
Ptchd3Q0EEE2 H2-Q5-202ENSMUST00000172979 998 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
Ptchd3Q0EEE2 Sec24d-208ENSMUST00000200333 307 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
Ptchd3Q0EEE2 Prrt2-206ENSMUST00000202045 429 ntTSL 5 BASIC19.11■□□□□ 0.65
Ptchd3Q0EEE2 Cited4-201ENSMUST00000094814 1249 ntAPPRIS P1 BASIC19.11■□□□□ 0.65
Ptchd3Q0EEE2 Mtfmt-201ENSMUST00000074792 2042 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Ptchd3Q0EEE2 Nexmif-201ENSMUST00000056502 5211 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
Ptchd3Q0EEE2 Upf1-201ENSMUST00000075666 4618 ntAPPRIS P2 TSL 1 (best) BASIC19.11■□□□□ 0.65
Ptchd3Q0EEE2 Ubp1-201ENSMUST00000009885 3742 ntAPPRIS ALT1 TSL 5 BASIC19.11■□□□□ 0.65
Ptchd3Q0EEE2 Mprip-201ENSMUST00000066330 7765 ntAPPRIS ALT2 TSL 5 BASIC19.11■□□□□ 0.65
Ptchd3Q0EEE2 Slc35b2-201ENSMUST00000041353 2326 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
Ptchd3Q0EEE2 Enah-203ENSMUST00000111025 3385 ntAPPRIS ALT2 TSL 5 BASIC19.1■□□□□ 0.65
Ptchd3Q0EEE2 Cdkn2d-203ENSMUST00000215619 1423 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Ptchd3Q0EEE2 Adpgk-201ENSMUST00000026266 2464 ntAPPRIS ALT1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Ptchd3Q0EEE2 Dleu2-201ENSMUST00000180377 1165 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
Ptchd3Q0EEE2 Tlx2-201ENSMUST00000089641 1236 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Ptchd3Q0EEE2 Ntn5-202ENSMUST00000182750 1758 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Ptchd3Q0EEE2 Pank2-204ENSMUST00000150843 4266 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Ptchd3Q0EEE2 Gm35161-201ENSMUST00000221765 941 ntTSL 5 BASIC19.09■□□□□ 0.65
Ptchd3Q0EEE2 Clec3b-201ENSMUST00000026890 992 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Ptchd3Q0EEE2 Arl4c-203ENSMUST00000187810 2740 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Ptchd3Q0EEE2 Fgfrl1-202ENSMUST00000112560 2318 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
Ptchd3Q0EEE2 Mtmr9-201ENSMUST00000058679 2570 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Ptchd3Q0EEE2 Sucla2-201ENSMUST00000022706 1545 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Ptchd3Q0EEE2 Sept7-202ENSMUST00000165594 2516 ntAPPRIS P2 TSL 5 BASIC19.09■□□□□ 0.65
Ptchd3Q0EEE2 Tk2-201ENSMUST00000050211 2406 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Ptchd3Q0EEE2 Fam216a-201ENSMUST00000031419 1388 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
Ptchd3Q0EEE2 Fndc4-201ENSMUST00000041266 1375 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
Ptchd3Q0EEE2 Vwc2-201ENSMUST00000056344 1350 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
Ptchd3Q0EEE2 Gm10620-201ENSMUST00000098379 1332 ntBASIC19.08■□□□□ 0.65
Ptchd3Q0EEE2 Pknox2-201ENSMUST00000039674 3632 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
Ptchd3Q0EEE2 E2f1-202ENSMUST00000103145 2732 ntAPPRIS P3 TSL 1 (best) BASIC19.08■□□□□ 0.65
Ptchd3Q0EEE2 Txnrd2-201ENSMUST00000115604 1235 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
Ptchd3Q0EEE2 Gm15820-201ENSMUST00000201566 728 ntBASIC19.08■□□□□ 0.64
Ptchd3Q0EEE2 Bloc1s5-202ENSMUST00000224115 1020 ntBASIC19.08■□□□□ 0.64
Ptchd3Q0EEE2 Lfng-201ENSMUST00000031555 2305 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
Ptchd3Q0EEE2 Rcan3-201ENSMUST00000030606 5111 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
Ptchd3Q0EEE2 Csf2ra-201ENSMUST00000076046 1849 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Retrieved 100 of 76,532 protein–RNA pairs in 18.6 ms