Protein–RNA interactions for Protein: O55187

Cbx4, E3 SUMO-protein ligase CBX4, mousemouse

Predictions only

Length 551 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cbx4O55187 Whrn-204ENSMUST00000095037 2419 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
Cbx4O55187 Tmem120b-202ENSMUST00000111619 1256 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
Cbx4O55187 Smad6-201ENSMUST00000041029 2971 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Cbx4O55187 Kremen2-201ENSMUST00000046525 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Cbx4O55187 Gpr137-204ENSMUST00000099782 1742 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
Cbx4O55187 Ppp2r5a-201ENSMUST00000067976 3088 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Cbx4O55187 Uqcrc1-201ENSMUST00000026743 1653 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Cbx4O55187 Mtfmt-201ENSMUST00000074792 2042 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Cbx4O55187 Aif1l-201ENSMUST00000001920 3117 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Cbx4O55187 Smco4-203ENSMUST00000215907 994 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Cbx4O55187 Gtpbp2-217ENSMUST00000172170 2587 ntTSL 5 BASIC19.48■□□□□ 0.71
Cbx4O55187 Dalrd3-201ENSMUST00000019183 1746 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Cbx4O55187 Laptm4a-201ENSMUST00000020909 1773 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Cbx4O55187 4930439D14Rik-201ENSMUST00000186765 359 ntBASIC19.48■□□□□ 0.71
Cbx4O55187 Copz2-201ENSMUST00000018816 930 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Cbx4O55187 3110082J24Rik-202ENSMUST00000199573 767 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Cbx4O55187 Ube2d2a-202ENSMUST00000170693 2483 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Cbx4O55187 Map3k21-201ENSMUST00000034316 5693 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Cbx4O55187 Cpsf4-202ENSMUST00000160422 1756 ntAPPRIS ALT1 TSL 5 BASIC19.47■□□□□ 0.71
Cbx4O55187 Stau2-217ENSMUST00000162751 3030 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Cbx4O55187 Usp2-202ENSMUST00000065461 2057 ntAPPRIS P2 TSL 1 (best) BASIC19.47■□□□□ 0.71
Cbx4O55187 Rcor1-201ENSMUST00000084968 5684 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
Cbx4O55187 Trim47-201ENSMUST00000021120 2204 ntAPPRIS P4 TSL 1 (best) BASIC19.47■□□□□ 0.71
Cbx4O55187 Smim19-201ENSMUST00000033935 1402 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Cbx4O55187 Hpdl-201ENSMUST00000055436 1804 ntAPPRIS P1 BASIC19.46■□□□□ 0.71
Cbx4O55187 4930524B15Rik-201ENSMUST00000102829 2000 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Cbx4O55187 Zfp618-201ENSMUST00000030043 1582 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
Cbx4O55187 Pfdn4-204ENSMUST00000109148 736 ntTSL 3 BASIC19.46■□□□□ 0.71
Cbx4O55187 Sumf1-206ENSMUST00000172188 723 ntTSL 5 BASIC19.46■□□□□ 0.71
Cbx4O55187 Tusc2-203ENSMUST00000193418 410 ntTSL 3 BASIC19.46■□□□□ 0.71
Cbx4O55187 Bicdl2-201ENSMUST00000062967 1913 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Cbx4O55187 Ikbip-202ENSMUST00000020150 1328 ntAPPRIS P3 TSL 1 (best) BASIC19.46■□□□□ 0.71
Cbx4O55187 Nr0b1-201ENSMUST00000026036 1808 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Cbx4O55187 Sema6d-204ENSMUST00000078621 6372 ntTSL 5 BASIC19.45■□□□□ 0.7
Cbx4O55187 Noa1-201ENSMUST00000047860 2288 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Cbx4O55187 Ccng2-201ENSMUST00000031331 2810 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Cbx4O55187 Ccdc112-201ENSMUST00000072835 2801 ntAPPRIS P1 TSL 5 BASIC19.45■□□□□ 0.7
Cbx4O55187 Phc2-202ENSMUST00000106079 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
Cbx4O55187 Gab1-201ENSMUST00000034150 4870 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Cbx4O55187 Hsd17b3-202ENSMUST00000166224 1286 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
Cbx4O55187 Gm26558-201ENSMUST00000180559 861 ntAPPRIS P1 BASIC19.45■□□□□ 0.7
Cbx4O55187 Kmt5b-201ENSMUST00000005518 1283 ntAPPRIS ALT2 TSL 5 BASIC19.45■□□□□ 0.7
Cbx4O55187 Fam19a5-201ENSMUST00000068088 2575 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Cbx4O55187 Hoxc11-201ENSMUST00000001701 2021 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Cbx4O55187 Pds5a-209ENSMUST00000201948 8934 ntAPPRIS P1 TSL 5 BASIC19.45■□□□□ 0.7
Cbx4O55187 Tmem230-206ENSMUST00000180286 1531 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
Cbx4O55187 Aplp1-201ENSMUST00000006828 2343 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Cbx4O55187 Kansl1-204ENSMUST00000106972 5427 ntAPPRIS ALT2 TSL 5 BASIC19.44■□□□□ 0.7
Cbx4O55187 N4bp1-201ENSMUST00000034074 6469 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Cbx4O55187 Ttc9b-201ENSMUST00000008088 2052 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Cbx4O55187 Pomgnt1-203ENSMUST00000106498 2719 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Cbx4O55187 Gm12922-201ENSMUST00000120626 809 ntBASIC19.44■□□□□ 0.7
Cbx4O55187 Zfp335os-201ENSMUST00000129364 1127 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
Cbx4O55187 Tcte2-209ENSMUST00000143162 1221 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
Cbx4O55187 Dctn3-203ENSMUST00000171641 885 ntTSL 3 BASIC19.44■□□□□ 0.7
Cbx4O55187 C1ql4-201ENSMUST00000064462 874 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Cbx4O55187 Inpp5a-203ENSMUST00000106098 2826 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Cbx4O55187 Kctd20-204ENSMUST00000122163 2423 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
Cbx4O55187 Rell2-212ENSMUST00000177058 1762 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
Cbx4O55187 Fdxacb1-203ENSMUST00000176335 1817 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
Cbx4O55187 Klhl15-205ENSMUST00000113916 2363 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Cbx4O55187 Pink1-201ENSMUST00000030536 2375 ntAPPRIS P2 TSL 1 (best) BASIC19.43■□□□□ 0.7
Cbx4O55187 Rab28-203ENSMUST00000201422 1697 ntTSL 5 BASIC19.43■□□□□ 0.7
Cbx4O55187 Pbx1-202ENSMUST00000072863 1709 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
Cbx4O55187 Rab5c-201ENSMUST00000019317 1967 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
Cbx4O55187 Adrb1-201ENSMUST00000038949 2491 ntAPPRIS P1 BASIC19.43■□□□□ 0.7
Cbx4O55187 Gm34220-201ENSMUST00000223001 2709 ntBASIC19.43■□□□□ 0.7
Cbx4O55187 Stau2-201ENSMUST00000027052 2763 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
Cbx4O55187 Gm8770-201ENSMUST00000121113 1109 ntBASIC19.43■□□□□ 0.7
Cbx4O55187 Zfp963-202ENSMUST00000154063 640 ntTSL 3 BASIC19.43■□□□□ 0.7
Cbx4O55187 Hagh-201ENSMUST00000024974 1101 ntAPPRIS ALT1 TSL 5 BASIC19.43■□□□□ 0.7
Cbx4O55187 Alad-201ENSMUST00000030090 1206 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Cbx4O55187 Kdm3b-201ENSMUST00000043775 6363 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Cbx4O55187 Ostc-201ENSMUST00000043937 1067 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Cbx4O55187 Rasgrp2-206ENSMUST00000113472 2124 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
Cbx4O55187 Zbed3-202ENSMUST00000221807 1945 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Cbx4O55187 Man1a-203ENSMUST00000105470 2847 ntAPPRIS P1 TSL 5 BASIC19.43■□□□□ 0.7
Cbx4O55187 Sys1-202ENSMUST00000109352 2001 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
Cbx4O55187 Kifc3-201ENSMUST00000034240 3277 ntAPPRIS P4 TSL 1 (best) BASIC19.42■□□□□ 0.7
Cbx4O55187 Lacc1-201ENSMUST00000062789 2444 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Cbx4O55187 D830036C21Rik-202ENSMUST00000208263 1548 ntBASIC19.42■□□□□ 0.7
Cbx4O55187 Sae1-201ENSMUST00000094815 1875 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Cbx4O55187 Rxrb-201ENSMUST00000044858 2623 ntAPPRIS P4 TSL 1 (best) BASIC19.42■□□□□ 0.7
Cbx4O55187 Matr3-209ENSMUST00000188275 1951 ntTSL 5 BASIC19.42■□□□□ 0.7
Cbx4O55187 Ung-201ENSMUST00000031587 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
Cbx4O55187 Pgam5-201ENSMUST00000059229 2044 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
Cbx4O55187 Arhgap23-201ENSMUST00000093940 2409 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Cbx4O55187 Lig3-204ENSMUST00000131537 1782 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Cbx4O55187 Lig3-209ENSMUST00000173009 1785 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Cbx4O55187 Cacnb1-202ENSMUST00000092736 1880 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Cbx4O55187 Cradd-205ENSMUST00000220279 1613 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Cbx4O55187 Zbtb4-203ENSMUST00000108640 4067 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Cbx4O55187 Gm15202-201ENSMUST00000154188 393 ntTSL 3 BASIC19.41■□□□□ 0.7
Cbx4O55187 Nrg3-203ENSMUST00000173780 2137 ntAPPRIS ALT2 TSL 5 BASIC19.41■□□□□ 0.7
Cbx4O55187 Gm43759-201ENSMUST00000196925 1261 ntBASIC19.41■□□□□ 0.7
Cbx4O55187 Fuz-214ENSMUST00000209132 853 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Cbx4O55187 Golgb1-201ENSMUST00000023534 498 ntBASIC19.41■□□□□ 0.7
Cbx4O55187 Ldb1-202ENSMUST00000056931 2295 ntAPPRIS P2 TSL 1 (best) BASIC19.41■□□□□ 0.7
Cbx4O55187 Slc35a2-209ENSMUST00000208397 1374 ntAPPRIS ALT2 TSL 5 BASIC19.41■□□□□ 0.7
Cbx4O55187 Bag5-202ENSMUST00000160576 1852 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Retrieved 100 of 76,532 protein–RNA pairs in 18.9 ms