Protein–RNA interactions for Protein: B1AR17

Chd3, Chromodomain helicase DNA-binding protein 3, mousemouse

Predictions only

Length 2,055 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd3B1AR17 Spock1-204ENSMUST00000186271 2005 ntAPPRIS P3 TSL 1 (best) BASIC19.63■□□□□ 0.73
Chd3B1AR17 Zfp69-201ENSMUST00000106280 2362 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
Chd3B1AR17 Fdxacb1-203ENSMUST00000176335 1817 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
Chd3B1AR17 Frat1-201ENSMUST00000087155 2614 ntAPPRIS P1 BASIC19.63■□□□□ 0.73
Chd3B1AR17 Zswim5-201ENSMUST00000044823 5582 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Chd3B1AR17 Srsf1-202ENSMUST00000107920 1209 ntTSL 5 BASIC19.63■□□□□ 0.73
Chd3B1AR17 Chrac1-202ENSMUST00000134353 538 ntAPPRIS ALT2 TSL 2 BASIC19.63■□□□□ 0.73
Chd3B1AR17 Plac9b-203ENSMUST00000184142 1040 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Chd3B1AR17 Mrpl40-201ENSMUST00000023391 1185 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Chd3B1AR17 Tfap2e-201ENSMUST00000048194 2085 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Chd3B1AR17 Ankrd28-201ENSMUST00000014640 6712 ntAPPRIS P2 TSL 1 (best) BASIC19.62■□□□□ 0.73
Chd3B1AR17 Zbtb7a-204ENSMUST00000121840 1676 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
Chd3B1AR17 Gm26682-201ENSMUST00000180850 1729 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
Chd3B1AR17 Slc25a41-201ENSMUST00000058661 1225 ntAPPRIS P3 TSL 1 (best) BASIC19.62■□□□□ 0.73
Chd3B1AR17 Acsl3-203ENSMUST00000134566 2492 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
Chd3B1AR17 Gm26617-201ENSMUST00000180381 4429 ntTSL 3 BASIC19.62■□□□□ 0.73
Chd3B1AR17 Hdhd2-206ENSMUST00000145634 1585 ntAPPRIS P1 TSL 5 BASIC19.61■□□□□ 0.73
Chd3B1AR17 Cdkn1c-201ENSMUST00000037287 1901 ntAPPRIS P3 TSL 1 (best) BASIC19.61■□□□□ 0.73
Chd3B1AR17 Tpst2-202ENSMUST00000071455 1741 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Chd3B1AR17 Zfp91-201ENSMUST00000038627 5531 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Chd3B1AR17 Pcgf6-201ENSMUST00000026032 2098 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Chd3B1AR17 Epb41l4b-203ENSMUST00000095076 6746 ntAPPRIS ALT2 TSL 5 BASIC19.61■□□□□ 0.73
Chd3B1AR17 Akr7a5-201ENSMUST00000073787 1288 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Chd3B1AR17 Ypel1-202ENSMUST00000090199 631 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
Chd3B1AR17 Gm37035-201ENSMUST00000194809 2148 ntBASIC19.61■□□□□ 0.73
Chd3B1AR17 Ccnjl-201ENSMUST00000050574 2672 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Chd3B1AR17 Tmem222-201ENSMUST00000105907 1484 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Chd3B1AR17 Wdsub1-202ENSMUST00000102751 1526 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
Chd3B1AR17 Cnrip1-201ENSMUST00000058159 1654 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Chd3B1AR17 Gm6277-202ENSMUST00000224036 2779 ntBASIC19.6■□□□□ 0.73
Chd3B1AR17 Fam58b-201ENSMUST00000059468 1224 ntAPPRIS P1 BASIC19.6■□□□□ 0.73
Chd3B1AR17 Tex264-202ENSMUST00000163441 1896 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Chd3B1AR17 Rem2-202ENSMUST00000164766 1884 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Chd3B1AR17 Grtp1-207ENSMUST00000211128 1416 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
Chd3B1AR17 Osbpl2-201ENSMUST00000040668 2805 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Chd3B1AR17 Noa1-201ENSMUST00000047860 2288 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Chd3B1AR17 Faap24-201ENSMUST00000032704 1857 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Chd3B1AR17 Stmn4-202ENSMUST00000118426 1281 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
Chd3B1AR17 Ankrd9-205ENSMUST00000142012 1226 ntAPPRIS ALT2 TSL 5 BASIC19.6■□□□□ 0.73
Chd3B1AR17 Cdkl3-210ENSMUST00000121591 2387 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
Chd3B1AR17 Iffo2-203ENSMUST00000174078 5716 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
Chd3B1AR17 Maf1-205ENSMUST00000160853 1651 ntAPPRIS P2 TSL 1 (best) BASIC19.59■□□□□ 0.73
Chd3B1AR17 Hsf1-201ENSMUST00000072838 2018 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
Chd3B1AR17 1700023F06Rik-202ENSMUST00000107026 1127 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
Chd3B1AR17 Dtymk-202ENSMUST00000112890 1055 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
Chd3B1AR17 Bsg-205ENSMUST00000179781 1261 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
Chd3B1AR17 Gm43060-201ENSMUST00000200621 289 ntBASIC19.59■□□□□ 0.73
Chd3B1AR17 Ubl3-202ENSMUST00000164904 2001 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Chd3B1AR17 Ccdc149-202ENSMUST00000198008 2470 ntTSL 5 BASIC19.59■□□□□ 0.73
Chd3B1AR17 Inpp5a-201ENSMUST00000026550 2774 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
Chd3B1AR17 Lhx2-201ENSMUST00000000253 2840 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Chd3B1AR17 Mast2-203ENSMUST00000106485 5705 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
Chd3B1AR17 Mast2-204ENSMUST00000106486 5723 ntAPPRIS P4 TSL 1 (best) BASIC19.59■□□□□ 0.73
Chd3B1AR17 Lacc1-201ENSMUST00000062789 2444 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
Chd3B1AR17 Ewsr1-205ENSMUST00000102930 2174 ntAPPRIS ALT2 TSL 5 BASIC19.58■□□□□ 0.73
Chd3B1AR17 Gpr137-204ENSMUST00000099782 1742 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
Chd3B1AR17 Slc35b2-207ENSMUST00000226086 850 ntBASIC19.58■□□□□ 0.73
Chd3B1AR17 Laptm4a-201ENSMUST00000020909 1773 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
Chd3B1AR17 Celf6-201ENSMUST00000034840 2765 ntAPPRIS P2 TSL 1 (best) BASIC19.58■□□□□ 0.72
Chd3B1AR17 Ankrd9-203ENSMUST00000135131 1563 ntAPPRIS P2 TSL 1 (best) BASIC19.58■□□□□ 0.72
Chd3B1AR17 Mir6236-201ENSMUST00000184437 123 ntBASIC19.58■□□□□ 0.72
Chd3B1AR17 Krtap5-3-201ENSMUST00000084414 1074 ntAPPRIS ALT2 TSL 5 BASIC19.58■□□□□ 0.72
Chd3B1AR17 Efcc1-201ENSMUST00000032132 2729 ntAPPRIS ALT2 TSL 5 BASIC19.58■□□□□ 0.72
Chd3B1AR17 Rbm38-201ENSMUST00000029014 1768 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Chd3B1AR17 Tinagl1-202ENSMUST00000105998 1976 ntAPPRIS P2 TSL 1 (best) BASIC19.57■□□□□ 0.72
Chd3B1AR17 Tead1-204ENSMUST00000106638 3047 ntAPPRIS ALT1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Chd3B1AR17 Sfmbt2-204ENSMUST00000114864 1901 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
Chd3B1AR17 Bfsp1-201ENSMUST00000028907 2372 ntAPPRIS P3 TSL 1 (best) BASIC19.57■□□□□ 0.72
Chd3B1AR17 Gm13063-201ENSMUST00000132247 669 ntTSL 3 BASIC19.57■□□□□ 0.72
Chd3B1AR17 Ldb1-202ENSMUST00000056931 2295 ntAPPRIS P2 TSL 1 (best) BASIC19.57■□□□□ 0.72
Chd3B1AR17 Kcnip1-201ENSMUST00000065970 1749 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Chd3B1AR17 Ppm1b-201ENSMUST00000080217 2753 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
Chd3B1AR17 Pgam5-201ENSMUST00000059229 2044 ntAPPRIS P3 TSL 1 (best) BASIC19.56■□□□□ 0.72
Chd3B1AR17 Gm11421-201ENSMUST00000122124 294 ntBASIC19.56■□□□□ 0.72
Chd3B1AR17 Ihh-201ENSMUST00000164097 2468 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Chd3B1AR17 Amigo1-201ENSMUST00000050909 5030 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Chd3B1AR17 Kctd9-201ENSMUST00000078053 3157 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
Chd3B1AR17 Irx5-202ENSMUST00000210246 2550 ntTSL 5 BASIC19.56■□□□□ 0.72
Chd3B1AR17 Etv4-212ENSMUST00000164750 2336 ntAPPRIS P3 TSL 1 (best) BASIC19.55■□□□□ 0.72
Chd3B1AR17 Smox-202ENSMUST00000110179 1320 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
Chd3B1AR17 Idh3a-205ENSMUST00000217484 2580 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
Chd3B1AR17 3830408C21Rik-205ENSMUST00000225426 1898 ntBASIC19.55■□□□□ 0.72
Chd3B1AR17 Deptor-203ENSMUST00000100660 1377 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
Chd3B1AR17 Cotl1-202ENSMUST00000168698 1520 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Chd3B1AR17 Ankrd33b-203ENSMUST00000110410 2070 ntAPPRIS P3 TSL 1 (best) BASIC19.55■□□□□ 0.72
Chd3B1AR17 Stoml2-201ENSMUST00000030169 1874 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Chd3B1AR17 Nsfl1c-202ENSMUST00000089140 1486 ntAPPRIS P3 TSL 5 BASIC19.55■□□□□ 0.72
Chd3B1AR17 Pianp-204ENSMUST00000160704 1116 ntAPPRIS P2 TSL 1 (best) BASIC19.55■□□□□ 0.72
Chd3B1AR17 Lmo1-202ENSMUST00000207178 912 ntAPPRIS ALT1 TSL 2 BASIC19.55■□□□□ 0.72
Chd3B1AR17 Raph1-202ENSMUST00000090293 2409 ntAPPRIS ALT2 TSL 5 BASIC19.55■□□□□ 0.72
Chd3B1AR17 3110053B16Rik-202ENSMUST00000140360 2004 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
Chd3B1AR17 Vapa-201ENSMUST00000024897 1640 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Chd3B1AR17 AC152827.1-201ENSMUST00000221143 2189 ntBASIC19.54■□□□□ 0.72
Chd3B1AR17 Pomgnt1-203ENSMUST00000106498 2719 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Chd3B1AR17 Ap1ar-201ENSMUST00000051737 2662 ntAPPRIS P1 TSL 3 BASIC19.54■□□□□ 0.72
Chd3B1AR17 Noc2l-201ENSMUST00000179543 2785 ntAPPRIS P2 TSL 1 (best) BASIC19.54■□□□□ 0.72
Chd3B1AR17 Krtap5-3-202ENSMUST00000187512 1652 ntAPPRIS P2 BASIC19.54■□□□□ 0.72
Chd3B1AR17 Rab7-205ENSMUST00000113600 2159 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Chd3B1AR17 Hccs-202ENSMUST00000112115 2473 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Chd3B1AR17 Gm27801-201ENSMUST00000184174 223 ntBASIC19.54■□□□□ 0.72
Retrieved 100 of 76,532 protein–RNA pairs in 17.7 ms