Protein–RNA interactions for Protein: P53783

Sox1, Transcription factor SOX-1, mousemouse

Predictions only

Length 391 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox1P53783 Accsl-201ENSMUST00000099690 2224 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Sox1P53783 Tfe3-204ENSMUST00000115677 2943 ntTSL 1 (best) BASIC10.91□□□□□ -0.66
Sox1P53783 Gm10432-202ENSMUST00000223300 4791 ntTSL 1 (best) BASIC10.91□□□□□ -0.66
Sox1P53783 Pomgnt1-205ENSMUST00000121052 2693 ntAPPRIS P1 TSL 5 BASIC10.91□□□□□ -0.66
Sox1P53783 Dopey2-207ENSMUST00000227156 7340 ntBASIC10.91□□□□□ -0.66
Sox1P53783 H3f3b-201ENSMUST00000016703 1993 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Sox1P53783 Prps1-201ENSMUST00000033809 1965 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Sox1P53783 Vegfa-204ENSMUST00000113520 654 ntAPPRIS ALT2 TSL 5 BASIC10.91□□□□□ -0.66
Sox1P53783 A730090N16Rik-201ENSMUST00000160137 627 ntTSL 1 (best) BASIC10.91□□□□□ -0.66
Sox1P53783 Gm6467-201ENSMUST00000171547 609 ntBASIC10.91□□□□□ -0.66
Sox1P53783 Mir7011-201ENSMUST00000183768 73 ntBASIC10.91□□□□□ -0.66
Sox1P53783 Ly6c1-206ENSMUST00000188845 784 ntAPPRIS ALT2 TSL 3 BASIC10.91□□□□□ -0.66
Sox1P53783 BC002189-201ENSMUST00000195674 598 ntBASIC10.91□□□□□ -0.66
Sox1P53783 Gm42617-201ENSMUST00000197640 1229 ntBASIC10.91□□□□□ -0.66
Sox1P53783 Gm17768-201ENSMUST00000201257 378 ntTSL 5 BASIC10.91□□□□□ -0.66
Sox1P53783 Gm7664-201ENSMUST00000221988 745 ntBASIC10.91□□□□□ -0.66
Sox1P53783 AC108416.3-201ENSMUST00000226148 557 ntBASIC10.91□□□□□ -0.66
Sox1P53783 Ang2-202ENSMUST00000228835 896 ntAPPRIS P1 BASIC10.91□□□□□ -0.66
Sox1P53783 Cerk-203ENSMUST00000156546 2162 ntTSL 1 (best) BASIC10.91□□□□□ -0.66
Sox1P53783 Papss1-201ENSMUST00000029666 2600 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Sox1P53783 Galntl5-202ENSMUST00000114965 1458 ntAPPRIS ALT2 TSL 1 (best) BASIC10.91□□□□□ -0.66
Sox1P53783 Bpi-201ENSMUST00000065039 1926 ntAPPRIS P2 TSL 1 (best) BASIC10.91□□□□□ -0.66
Sox1P53783 4833422C13Rik-202ENSMUST00000160385 2828 ntTSL 1 (best) BASIC10.91□□□□□ -0.66
Sox1P53783 Gm45719-201ENSMUST00000207954 1662 ntBASIC10.91□□□□□ -0.66
Sox1P53783 Ctps2-205ENSMUST00000112302 3223 ntTSL 1 (best) BASIC10.91□□□□□ -0.66
Sox1P53783 Wwp2-204ENSMUST00000212205 2758 ntTSL 1 (best) BASIC10.91□□□□□ -0.66
Sox1P53783 Gm44547-201ENSMUST00000207793 1446 ntBASIC10.91□□□□□ -0.66
Sox1P53783 Gm39168-201ENSMUST00000210181 1423 ntTSL 1 (best) BASIC10.91□□□□□ -0.66
Sox1P53783 Tmem29-201ENSMUST00000059256 1402 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Sox1P53783 Pla2g7-201ENSMUST00000024706 2097 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Sox1P53783 Fam160b2-201ENSMUST00000022690 4033 ntAPPRIS P1 TSL 5 BASIC10.91□□□□□ -0.66
Sox1P53783 Hgs-202ENSMUST00000106203 2901 ntAPPRIS ALT2 TSL 5 BASIC10.91□□□□□ -0.66
Sox1P53783 Nrros-208ENSMUST00000143682 3577 ntAPPRIS ALT2 TSL 1 (best) BASIC10.91□□□□□ -0.66
Sox1P53783 Gm20498-203ENSMUST00000166664 2284 ntAPPRIS P1 TSL 2 BASIC10.91□□□□□ -0.66
Sox1P53783 Lhx6-201ENSMUST00000112960 3345 ntAPPRIS P1 TSL 2 BASIC10.91□□□□□ -0.66
Sox1P53783 Adck2-204ENSMUST00000140364 3542 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Sox1P53783 Rcor3-201ENSMUST00000073279 3748 ntTSL 1 (best) BASIC10.91□□□□□ -0.66
Sox1P53783 D030068K23Rik-203ENSMUST00000181098 1399 ntTSL 1 (best) BASIC10.9□□□□□ -0.66
Sox1P53783 Sdcbp2-201ENSMUST00000028950 1399 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
Sox1P53783 Frmpd2-203ENSMUST00000208577 5192 ntAPPRIS P1 TSL 5 BASIC10.9□□□□□ -0.66
Sox1P53783 Gm43242-201ENSMUST00000199507 1776 ntBASIC10.9□□□□□ -0.66
Sox1P53783 Vrk1-204ENSMUST00000220629 1777 ntAPPRIS ALT2 TSL 1 (best) BASIC10.9□□□□□ -0.66
Sox1P53783 Samhd1-203ENSMUST00000109549 3245 ntAPPRIS ALT2 TSL 1 (best) BASIC10.9□□□□□ -0.66
Sox1P53783 Th-202ENSMUST00000105929 1950 ntTSL 1 (best) BASIC10.9□□□□□ -0.66
Sox1P53783 Ptprh-202ENSMUST00000166650 3642 ntAPPRIS P1 TSL 5 BASIC10.9□□□□□ -0.66
Sox1P53783 Trpm1-217ENSMUST00000206263 5493 ntAPPRIS ALT2 TSL 5 BASIC10.9□□□□□ -0.66
Sox1P53783 Cyp27b1-201ENSMUST00000165764 2380 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
Sox1P53783 Myocd-201ENSMUST00000101042 2585 ntTSL 1 (best) BASIC10.9□□□□□ -0.66
Sox1P53783 Xaf1-204ENSMUST00000146233 2597 ntAPPRIS P1 TSL 5 BASIC10.9□□□□□ -0.66
Sox1P53783 Capn3-205ENSMUST00000110719 2778 ntTSL 5 BASIC10.9□□□□□ -0.66
Sox1P53783 Chd5-201ENSMUST00000005175 9122 ntAPPRIS ALT2 TSL 5 BASIC10.9□□□□□ -0.66
Sox1P53783 Maml3-202ENSMUST00000121440 8288 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
Sox1P53783 Slamf9-201ENSMUST00000027830 1313 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
Sox1P53783 Milr1-202ENSMUST00000106794 1514 ntAPPRIS ALT2 TSL 1 (best) BASIC10.9□□□□□ -0.66
Sox1P53783 Gab3-202ENSMUST00000114104 1705 ntAPPRIS ALT2 TSL 5 BASIC10.9□□□□□ -0.66
Sox1P53783 Zic4-204ENSMUST00000172646 2535 ntAPPRIS P1 TSL 5 BASIC10.9□□□□□ -0.66
Sox1P53783 Hkdc1-201ENSMUST00000020277 3517 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
Sox1P53783 Ly6e-210ENSMUST00000188866 2068 ntAPPRIS P1 TSL 3 BASIC10.9□□□□□ -0.66
Sox1P53783 Rab10os-203ENSMUST00000178074 4006 ntTSL 1 (best) BASIC10.9□□□□□ -0.66
Sox1P53783 Igkv12-41-201ENSMUST00000103369 347 ntAPPRIS P1 BASIC10.9□□□□□ -0.66
Sox1P53783 Gm14539-201ENSMUST00000117527 174 ntBASIC10.9□□□□□ -0.66
Sox1P53783 Gm12011-201ENSMUST00000119734 618 ntBASIC10.9□□□□□ -0.66
Sox1P53783 Gm14048-201ENSMUST00000121864 1268 ntBASIC10.9□□□□□ -0.66
Sox1P53783 Speer4f2-201ENSMUST00000166086 1278 ntAPPRIS P1 TSL 5 BASIC10.9□□□□□ -0.66
Sox1P53783 Rergl-201ENSMUST00000170650 958 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
Sox1P53783 Gm6633-201ENSMUST00000173851 270 ntBASIC10.9□□□□□ -0.66
Sox1P53783 Gm29200-201ENSMUST00000188118 1085 ntTSL 1 (best) BASIC10.9□□□□□ -0.66
Sox1P53783 4930449E01Rik-202ENSMUST00000188698 532 ntTSL 3 BASIC10.9□□□□□ -0.66
Sox1P53783 Platr10-202ENSMUST00000191479 818 ntBASIC10.9□□□□□ -0.66
Sox1P53783 Gm37612-201ENSMUST00000193626 582 ntTSL 5 BASIC10.9□□□□□ -0.66
Sox1P53783 Gm38216-201ENSMUST00000194872 1214 ntBASIC10.9□□□□□ -0.66
Sox1P53783 Gm43787-201ENSMUST00000197792 1037 ntBASIC10.9□□□□□ -0.66
Sox1P53783 Gm32567-201ENSMUST00000211244 682 ntTSL 5 BASIC10.9□□□□□ -0.66
Sox1P53783 AC156801.1-201ENSMUST00000216158 493 ntTSL 5 BASIC10.9□□□□□ -0.66
Sox1P53783 Ccdc153-206ENSMUST00000216632 800 ntAPPRIS ALT2 TSL 2 BASIC10.9□□□□□ -0.66
Sox1P53783 AC105950.2-201ENSMUST00000220938 368 ntBASIC10.9□□□□□ -0.66
Sox1P53783 1700066J03Rik-202ENSMUST00000224280 516 ntBASIC10.9□□□□□ -0.66
Sox1P53783 AC140426.1-201ENSMUST00000227933 459 ntBASIC10.9□□□□□ -0.66
Sox1P53783 AC116390.1-201ENSMUST00000227975 670 ntBASIC10.9□□□□□ -0.66
Sox1P53783 AC123533.3-201ENSMUST00000228056 454 ntBASIC10.9□□□□□ -0.66
Sox1P53783 Iqcf5-201ENSMUST00000085113 551 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
Sox1P53783 Bicra-204ENSMUST00000210781 5975 ntAPPRIS P1 TSL 5 BASIC10.9□□□□□ -0.66
Sox1P53783 Atp1b2-201ENSMUST00000047889 2842 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
Sox1P53783 Tiprl-201ENSMUST00000043235 4380 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
Sox1P53783 Pdcd4-202ENSMUST00000074371 2418 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
Sox1P53783 Paip2b-201ENSMUST00000058383 3982 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
Sox1P53783 Ces1d-201ENSMUST00000034172 2004 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
Sox1P53783 Lig1-210ENSMUST00000165964 3166 ntAPPRIS P1 TSL 5 BASIC10.9□□□□□ -0.66
Sox1P53783 Faap100-201ENSMUST00000026448 3193 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
Sox1P53783 C330021F23Rik-202ENSMUST00000136592 1621 ntAPPRIS P2 TSL 1 (best) BASIC10.9□□□□□ -0.66
Sox1P53783 Zfp853-203ENSMUST00000212715 3133 ntAPPRIS ALT2 TSL 5 BASIC10.9□□□□□ -0.66
Sox1P53783 Cep128-210ENSMUST00000141429 4807 ntAPPRIS P2 TSL 1 (best) BASIC10.9□□□□□ -0.66
Sox1P53783 Crat-201ENSMUST00000028207 3833 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.67
Sox1P53783 Entpd5-206ENSMUST00000122194 2145 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.67
Sox1P53783 Slc45a4-201ENSMUST00000054266 4664 ntAPPRIS ALT2 TSL 5 BASIC10.9□□□□□ -0.67
Sox1P53783 Spata20-201ENSMUST00000041705 2627 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
Sox1P53783 Slc37a4-201ENSMUST00000165839 2086 ntAPPRIS P2 TSL 1 (best) BASIC10.89□□□□□ -0.67
Sox1P53783 Rab3d-203ENSMUST00000122211 3886 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
Sox1P53783 4930512J16Rik-201ENSMUST00000203704 1859 ntTSL 1 (best) BASIC10.89□□□□□ -0.67
Sox1P53783 Thrap3-201ENSMUST00000080919 4378 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
Retrieved 100 of 76,532 protein–RNA pairs in 30.7 ms