Protein–RNA interactions for Protein: P39428

Traf1, TNF receptor-associated factor 1, mousemouse

Predictions only

Length 409 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Traf1P39428 Trim45-201ENSMUST00000037409 4612 ntAPPRIS P3 TSL 1 (best) BASIC12.34□□□□□ -0.43
Traf1P39428 Dclk2-209ENSMUST00000195561 3486 ntAPPRIS ALT2 TSL 1 (best) BASIC12.34□□□□□ -0.43
Traf1P39428 Lpin3-204ENSMUST00000109457 3215 ntAPPRIS ALT2 TSL 1 (best) BASIC12.34□□□□□ -0.43
Traf1P39428 Slc45a1-202ENSMUST00000117997 2955 ntAPPRIS ALT2 TSL 1 (best) BASIC12.34□□□□□ -0.43
Traf1P39428 Oprm1-212ENSMUST00000105603 2053 ntTSL 5 BASIC12.34□□□□□ -0.43
Traf1P39428 Tnfrsf9-201ENSMUST00000030808 2099 ntAPPRIS P3 TSL 1 (best) BASIC12.34□□□□□ -0.43
Traf1P39428 Stk4-201ENSMUST00000018353 5232 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Traf1P39428 Kcnn3-201ENSMUST00000000811 2884 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Traf1P39428 Rbm8a-201ENSMUST00000048915 2608 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
Traf1P39428 Ptpn23-201ENSMUST00000040021 5346 ntAPPRIS P1 TSL 5 BASIC12.34□□□□□ -0.43
Traf1P39428 Flicr-201ENSMUST00000144719 3455 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
Traf1P39428 Ift88-201ENSMUST00000122063 3088 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Traf1P39428 Gpr179-201ENSMUST00000093942 9219 ntAPPRIS P1 TSL 5 BASIC12.34□□□□□ -0.43
Traf1P39428 Gm42449-201ENSMUST00000200349 2258 ntBASIC12.34□□□□□ -0.43
Traf1P39428 Gm6768-201ENSMUST00000022467 1878 ntBASIC12.34□□□□□ -0.43
Traf1P39428 AC149588.2-201ENSMUST00000228182 1859 ntBASIC12.34□□□□□ -0.43
Traf1P39428 Mkx-201ENSMUST00000079788 3202 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.43
Traf1P39428 Zmat1-201ENSMUST00000064659 3501 ntAPPRIS P2 TSL 1 (best) BASIC12.33□□□□□ -0.43
Traf1P39428 L3mbtl1-201ENSMUST00000035751 2724 ntAPPRIS P1 TSL 5 BASIC12.33□□□□□ -0.44
Traf1P39428 Clp1-201ENSMUST00000028475 1912 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Traf1P39428 Nos3-201ENSMUST00000030834 4132 ntAPPRIS P2 TSL 1 (best) BASIC12.33□□□□□ -0.44
Traf1P39428 Syn2-202ENSMUST00000169345 3854 ntAPPRIS ALT2 TSL 1 (best) BASIC12.33□□□□□ -0.44
Traf1P39428 Slc12a7-201ENSMUST00000017900 5142 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Traf1P39428 Rin1-201ENSMUST00000025818 4184 ntAPPRIS ALT2 TSL 1 (best) BASIC12.33□□□□□ -0.44
Traf1P39428 Lrrc4-201ENSMUST00000062304 3615 ntAPPRIS P1 BASIC12.33□□□□□ -0.44
Traf1P39428 Nectin4-201ENSMUST00000006578 3636 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Traf1P39428 Slc25a17-201ENSMUST00000023040 1667 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Traf1P39428 Ribc2-201ENSMUST00000023067 1652 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Traf1P39428 4632411P08Rik-201ENSMUST00000181005 3237 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
Traf1P39428 Limch1-201ENSMUST00000038188 5903 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
Traf1P39428 Gm23595-201ENSMUST00000104306 130 ntBASIC12.33□□□□□ -0.44
Traf1P39428 Gm17151-201ENSMUST00000105760 367 ntTSL 3 BASIC12.33□□□□□ -0.44
Traf1P39428 Mapk8-202ENSMUST00000111942 927 ntTSL 5 BASIC12.33□□□□□ -0.44
Traf1P39428 Lemd1-201ENSMUST00000112357 964 ntAPPRIS P3 TSL 1 (best) BASIC12.33□□□□□ -0.44
Traf1P39428 Paip2-202ENSMUST00000115734 815 ntAPPRIS P1 TSL 5 BASIC12.33□□□□□ -0.44
Traf1P39428 Gm11919-201ENSMUST00000117609 721 ntBASIC12.33□□□□□ -0.44
Traf1P39428 Gm15031-201ENSMUST00000121341 210 ntBASIC12.33□□□□□ -0.44
Traf1P39428 Gm13857-201ENSMUST00000139645 173 ntBASIC12.33□□□□□ -0.44
Traf1P39428 Dnajc4-202ENSMUST00000179118 840 ntAPPRIS P2 TSL 1 (best) BASIC12.33□□□□□ -0.44
Traf1P39428 Mmp7-201ENSMUST00000018767 1068 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Traf1P39428 Gm38349-201ENSMUST00000195732 462 ntBASIC12.33□□□□□ -0.44
Traf1P39428 Pla2g1b-201ENSMUST00000031495 557 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Traf1P39428 Olfr60-201ENSMUST00000075470 936 ntAPPRIS P1 BASIC12.33□□□□□ -0.44
Traf1P39428 Ccdc136-201ENSMUST00000096084 3826 ntAPPRIS ALT2 TSL 5 BASIC12.33□□□□□ -0.44
Traf1P39428 Trim46-203ENSMUST00000107464 3252 ntTSL 5 BASIC12.33□□□□□ -0.44
Traf1P39428 Ttc1-201ENSMUST00000048578 1438 ntAPPRIS P2 TSL 1 (best) BASIC12.33□□□□□ -0.44
Traf1P39428 Wdr78-203ENSMUST00000106868 4045 ntAPPRIS P1 TSL 5 BASIC12.33□□□□□ -0.44
Traf1P39428 Tesk2-201ENSMUST00000045542 3033 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Traf1P39428 Lhx9-205ENSMUST00000112030 4633 ntTSL 5 BASIC12.33□□□□□ -0.44
Traf1P39428 Lysmd4-202ENSMUST00000179106 3319 ntAPPRIS ALT2 TSL 2 BASIC12.33□□□□□ -0.44
Traf1P39428 Zfp36-201ENSMUST00000051241 2790 ntAPPRIS P2 TSL 1 (best) BASIC12.33□□□□□ -0.44
Traf1P39428 Babam2-204ENSMUST00000114515 1497 ntTSL 5 BASIC12.33□□□□□ -0.44
Traf1P39428 Syt14-201ENSMUST00000016344 1904 ntAPPRIS ALT2 TSL 1 (best) BASIC12.33□□□□□ -0.44
Traf1P39428 Ccin-201ENSMUST00000095107 1941 ntAPPRIS P1 BASIC12.33□□□□□ -0.44
Traf1P39428 Nf2-202ENSMUST00000056290 2394 ntAPPRIS ALT1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Traf1P39428 Marveld2-204ENSMUST00000225754 3111 ntAPPRIS P1 BASIC12.33□□□□□ -0.44
Traf1P39428 Chdh-202ENSMUST00000118917 3406 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Traf1P39428 Ccdc136-207ENSMUST00000154619 3356 ntAPPRIS ALT2 TSL 5 BASIC12.32□□□□□ -0.44
Traf1P39428 Mknk2-201ENSMUST00000003433 3065 ntAPPRIS ALT2 TSL 1 (best) BASIC12.32□□□□□ -0.44
Traf1P39428 Prx-201ENSMUST00000065487 4497 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
Traf1P39428 Irf9-202ENSMUST00000130697 2459 ntAPPRIS P3 TSL 1 (best) BASIC12.32□□□□□ -0.44
Traf1P39428 Gm35021-201ENSMUST00000210105 2329 ntTSL 5 BASIC12.32□□□□□ -0.44
Traf1P39428 Ift88os-201ENSMUST00000149702 2016 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
Traf1P39428 Oas1d-201ENSMUST00000044224 2021 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Traf1P39428 4921524J17Rik-201ENSMUST00000047749 1587 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Traf1P39428 Ppat-202ENSMUST00000140076 3981 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Traf1P39428 Nppa-201ENSMUST00000103230 865 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Traf1P39428 Lime1-202ENSMUST00000108804 960 ntTSL 3 BASIC12.32□□□□□ -0.44
Traf1P39428 Gm8019-201ENSMUST00000119317 587 ntBASIC12.32□□□□□ -0.44
Traf1P39428 Gm13031-201ENSMUST00000140501 924 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
Traf1P39428 6820431F20Rik-201ENSMUST00000150051 936 ntBASIC12.32□□□□□ -0.44
Traf1P39428 Cnfn-202ENSMUST00000167591 698 ntAPPRIS ALT2 TSL 1 (best) BASIC12.32□□□□□ -0.44
Traf1P39428 Gm17019-201ENSMUST00000167908 1162 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Traf1P39428 Gm27441-201ENSMUST00000185000 105 ntBASIC12.32□□□□□ -0.44
Traf1P39428 1700001J11Rik-201ENSMUST00000185917 759 ntBASIC12.32□□□□□ -0.44
Traf1P39428 Gm8384-201ENSMUST00000190905 704 ntBASIC12.32□□□□□ -0.44
Traf1P39428 Ms4a7-202ENSMUST00000056035 882 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
Traf1P39428 Rhox8-201ENSMUST00000071885 1204 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Traf1P39428 8030423F21Rik-201ENSMUST00000064097 2851 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
Traf1P39428 Armcx2-202ENSMUST00000113193 3666 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Traf1P39428 Ptp4a3-203ENSMUST00000165541 3539 ntAPPRIS P1 TSL 5 BASIC12.32□□□□□ -0.44
Traf1P39428 Trim16-202ENSMUST00000072639 1929 ntTSL 2 BASIC12.32□□□□□ -0.44
Traf1P39428 Ece1-201ENSMUST00000102518 4816 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Traf1P39428 Gm3372-201ENSMUST00000198806 1792 ntBASIC12.32□□□□□ -0.44
Traf1P39428 Ces2h-201ENSMUST00000172032 2445 ntAPPRIS P1 TSL 5 BASIC12.32□□□□□ -0.44
Traf1P39428 Fnbp1l-201ENSMUST00000162409 5198 ntTSL 5 BASIC12.32□□□□□ -0.44
Traf1P39428 Src-204ENSMUST00000109531 3586 ntAPPRIS P1 TSL 5 BASIC12.32□□□□□ -0.44
Traf1P39428 D630003M21Rik-201ENSMUST00000046944 3910 ntAPPRIS P3 TSL 1 (best) BASIC12.32□□□□□ -0.44
Traf1P39428 Olfr1121-202ENSMUST00000213792 1996 ntAPPRIS P1 TSL 5 BASIC12.32□□□□□ -0.44
Traf1P39428 Acvrl1-201ENSMUST00000000542 3640 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Traf1P39428 Micu1-212ENSMUST00000179709 1814 ntAPPRIS P3 TSL 1 (best) BASIC12.32□□□□□ -0.44
Traf1P39428 Hottip-201ENSMUST00000141300 2346 ntTSL 2 BASIC12.32□□□□□ -0.44
Traf1P39428 Zkscan6-201ENSMUST00000018491 2302 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Traf1P39428 Gm17980-201ENSMUST00000217977 2349 ntBASIC12.32□□□□□ -0.44
Traf1P39428 Lrrc8a-201ENSMUST00000095078 4301 ntAPPRIS P1 TSL 5 BASIC12.32□□□□□ -0.44
Traf1P39428 Zfp518b-203ENSMUST00000179555 6816 ntAPPRIS P1 TSL 2 BASIC12.32□□□□□ -0.44
Traf1P39428 Dclk3-201ENSMUST00000111879 3005 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Traf1P39428 Hcn1-201ENSMUST00000006991 14141 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Traf1P39428 Gm38344-201ENSMUST00000195306 1353 ntBASIC12.31□□□□□ -0.44
Traf1P39428 Lingo1-206ENSMUST00000210032 3627 ntTSL 5 BASIC12.31□□□□□ -0.44
Retrieved 100 of 76,532 protein–RNA pairs in 34.9 ms