Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Madd-202ENSMUST00000066473 5974 ntAPPRIS ALT2 TSL 5 BASIC11.36□□□□□ -0.59
Upf3bQ3ULL6 Ap1b1-201ENSMUST00000009234 4085 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
Upf3bQ3ULL6 Gm3409-202ENSMUST00000110599 1154 ntAPPRIS P2 TSL 5 BASIC11.36□□□□□ -0.59
Upf3bQ3ULL6 Camk2a-204ENSMUST00000115295 979 ntTSL 1 (best) BASIC11.36□□□□□ -0.59
Upf3bQ3ULL6 Fthl17-ps2-201ENSMUST00000122268 528 ntBASIC11.36□□□□□ -0.59
Upf3bQ3ULL6 Tctex1d1-205ENSMUST00000140654 891 ntAPPRIS ALT2 TSL 2 BASIC11.36□□□□□ -0.59
Upf3bQ3ULL6 Platr12-201ENSMUST00000141027 462 ntTSL 3 BASIC11.36□□□□□ -0.59
Upf3bQ3ULL6 Coa3-202ENSMUST00000168089 291 ntTSL 3 BASIC11.36□□□□□ -0.59
Upf3bQ3ULL6 Gm3415-202ENSMUST00000179214 1154 ntAPPRIS P2 TSL 5 BASIC11.36□□□□□ -0.59
Upf3bQ3ULL6 Gm6771-201ENSMUST00000182716 1001 ntBASIC11.36□□□□□ -0.59
Upf3bQ3ULL6 A930005H10Rik-204ENSMUST00000185681 625 ntTSL 1 (best) BASIC11.36□□□□□ -0.59
Upf3bQ3ULL6 A930005H10Rik-206ENSMUST00000188260 739 ntTSL 2 BASIC11.36□□□□□ -0.59
Upf3bQ3ULL6 Gm8918-201ENSMUST00000190587 1087 ntBASIC11.36□□□□□ -0.59
Upf3bQ3ULL6 Gm34379-201ENSMUST00000195036 290 ntBASIC11.36□□□□□ -0.59
Upf3bQ3ULL6 Gm42780-201ENSMUST00000197083 734 ntBASIC11.36□□□□□ -0.59
Upf3bQ3ULL6 Gm3409-203ENSMUST00000199142 1167 ntAPPRIS ALT2 TSL 5 BASIC11.36□□□□□ -0.59
Upf3bQ3ULL6 Gm3402-203ENSMUST00000200228 1154 ntAPPRIS P2 TSL 5 BASIC11.36□□□□□ -0.59
Upf3bQ3ULL6 Gm43460-201ENSMUST00000202491 1057 ntBASIC11.36□□□□□ -0.59
Upf3bQ3ULL6 Gm31941-201ENSMUST00000209689 350 ntBASIC11.36□□□□□ -0.59
Upf3bQ3ULL6 Gm11634-202ENSMUST00000209862 573 ntAPPRIS P5 TSL 5 BASIC11.36□□□□□ -0.59
Upf3bQ3ULL6 Gm7319-201ENSMUST00000210047 778 ntBASIC11.36□□□□□ -0.59
Upf3bQ3ULL6 Gm6390-201ENSMUST00000215034 589 ntBASIC11.36□□□□□ -0.59
Upf3bQ3ULL6 CT030011.1-201ENSMUST00000221959 264 ntTSL 5 BASIC11.36□□□□□ -0.59
Upf3bQ3ULL6 CT010480.2-201ENSMUST00000225424 737 ntBASIC11.36□□□□□ -0.59
Upf3bQ3ULL6 Ctrl-201ENSMUST00000034368 879 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
Upf3bQ3ULL6 Rpl3l-201ENSMUST00000045186 1033 ntTSL 1 (best) BASIC11.36□□□□□ -0.59
Upf3bQ3ULL6 Ttc24-202ENSMUST00000064550 671 ntTSL 1 (best) BASIC11.36□□□□□ -0.59
Upf3bQ3ULL6 Slc6a18-201ENSMUST00000022105 2839 ntTSL 1 (best) BASIC11.36□□□□□ -0.59
Upf3bQ3ULL6 Myo15b-201ENSMUST00000040703 2825 ntTSL 1 (best) BASIC11.36□□□□□ -0.59
Upf3bQ3ULL6 Spata2-201ENSMUST00000057627 4012 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
Upf3bQ3ULL6 5730403I07Rik-201ENSMUST00000183878 2033 ntTSL 1 (best) BASIC11.36□□□□□ -0.59
Upf3bQ3ULL6 Mthfr-201ENSMUST00000069604 6072 ntAPPRIS ALT2 TSL 1 (best) BASIC11.36□□□□□ -0.59
Upf3bQ3ULL6 Slc1a2-201ENSMUST00000005220 2127 ntTSL 1 (best) BASIC11.36□□□□□ -0.59
Upf3bQ3ULL6 Myadm-202ENSMUST00000164553 2799 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
Upf3bQ3ULL6 Mpp1-202ENSMUST00000114091 1558 ntTSL 2 BASIC11.36□□□□□ -0.59
Upf3bQ3ULL6 Myh4-201ENSMUST00000018632 6016 ntAPPRIS P1 TSL 5 BASIC11.36□□□□□ -0.59
Upf3bQ3ULL6 Celf2-224ENSMUST00000182879 2223 ntTSL 1 (best) BASIC11.36□□□□□ -0.59
Upf3bQ3ULL6 Tiam1-204ENSMUST00000114124 7406 ntAPPRIS P1 TSL 5 BASIC11.36□□□□□ -0.59
Upf3bQ3ULL6 Maob-201ENSMUST00000040820 2411 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
Upf3bQ3ULL6 Zfp964-203ENSMUST00000204285 4333 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
Upf3bQ3ULL6 Sh3gl2-204ENSMUST00000107189 3231 ntTSL 1 (best) BASIC11.35□□□□□ -0.59
Upf3bQ3ULL6 Ano4-202ENSMUST00000181976 1410 ntTSL 1 (best) BASIC11.35□□□□□ -0.59
Upf3bQ3ULL6 Gm1661-201ENSMUST00000077500 1422 ntAPPRIS P3 TSL 1 (best) BASIC11.35□□□□□ -0.59
Upf3bQ3ULL6 Odf2l-202ENSMUST00000098538 2564 ntTSL 1 (best) BASIC11.35□□□□□ -0.59
Upf3bQ3ULL6 Dcaf11-206ENSMUST00000128490 2660 ntAPPRIS P2 TSL 2 BASIC11.35□□□□□ -0.59
Upf3bQ3ULL6 Arhgap24-204ENSMUST00000112852 2783 ntTSL 1 (best) BASIC11.35□□□□□ -0.59
Upf3bQ3ULL6 Pde6b-201ENSMUST00000031456 2799 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
Upf3bQ3ULL6 Atf7ip2-201ENSMUST00000044005 2778 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
Upf3bQ3ULL6 Gm44913-201ENSMUST00000208060 2990 ntBASIC11.35□□□□□ -0.59
Upf3bQ3ULL6 Col5a2-201ENSMUST00000086430 6625 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
Upf3bQ3ULL6 Lrrc57-201ENSMUST00000102496 1848 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
Upf3bQ3ULL6 Baat-201ENSMUST00000043056 1941 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
Upf3bQ3ULL6 Madd-204ENSMUST00000077941 5990 ntAPPRIS ALT2 TSL 2 BASIC11.35□□□□□ -0.59
Upf3bQ3ULL6 Madd-205ENSMUST00000099723 5977 ntAPPRIS ALT2 TSL 1 (best) BASIC11.35□□□□□ -0.59
Upf3bQ3ULL6 Tank-204ENSMUST00000112501 2227 ntAPPRIS ALT2 TSL 1 (best) BASIC11.35□□□□□ -0.59
Upf3bQ3ULL6 Myo1c-203ENSMUST00000102505 4652 ntAPPRIS ALT1 TSL 5 BASIC11.35□□□□□ -0.59
Upf3bQ3ULL6 Car12-202ENSMUST00000085420 3639 ntAPPRIS ALT2 TSL 1 (best) BASIC11.35□□□□□ -0.59
Upf3bQ3ULL6 Rbmx2-ps-201ENSMUST00000119377 930 ntBASIC11.35□□□□□ -0.59
Upf3bQ3ULL6 Gm14993-201ENSMUST00000121180 164 ntBASIC11.35□□□□□ -0.59
Upf3bQ3ULL6 Gm11980-201ENSMUST00000121445 986 ntBASIC11.35□□□□□ -0.59
Upf3bQ3ULL6 Aamdc-206ENSMUST00000136757 789 ntAPPRIS P1 TSL 2 BASIC11.35□□□□□ -0.59
Upf3bQ3ULL6 Gm16876-201ENSMUST00000151945 760 ntTSL 1 (best) BASIC11.35□□□□□ -0.59
Upf3bQ3ULL6 Gm22146-201ENSMUST00000157397 288 ntBASIC11.35□□□□□ -0.59
Upf3bQ3ULL6 Gm15524-201ENSMUST00000159874 463 ntTSL 3 BASIC11.35□□□□□ -0.59
Upf3bQ3ULL6 Gm5801-201ENSMUST00000182247 780 ntBASIC11.35□□□□□ -0.59
Upf3bQ3ULL6 Hrc-202ENSMUST00000211327 607 ntTSL 5 BASIC11.35□□□□□ -0.59
Upf3bQ3ULL6 CT009713.2-201ENSMUST00000225532 1149 ntBASIC11.35□□□□□ -0.59
Upf3bQ3ULL6 AC154407.1-201ENSMUST00000226777 526 ntBASIC11.35□□□□□ -0.59
Upf3bQ3ULL6 Asna1-201ENSMUST00000064314 1256 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
Upf3bQ3ULL6 1700029P11Rik-201ENSMUST00000074608 1024 ntAPPRIS P1 BASIC11.35□□□□□ -0.59
Upf3bQ3ULL6 4631405J19Rik-201ENSMUST00000099699 1225 ntTSL 1 (best) BASIC11.35□□□□□ -0.59
Upf3bQ3ULL6 Psd2-203ENSMUST00000175734 4300 ntAPPRIS ALT2 TSL 1 (best) BASIC11.35□□□□□ -0.59
Upf3bQ3ULL6 Gm3755-201ENSMUST00000169555 1462 ntAPPRIS P1 TSL 5 BASIC11.35□□□□□ -0.59
Upf3bQ3ULL6 Txndc9-208ENSMUST00000195247 1699 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
Upf3bQ3ULL6 Gm45719-201ENSMUST00000207954 1662 ntBASIC11.35□□□□□ -0.59
Upf3bQ3ULL6 Tacr1-201ENSMUST00000032122 5021 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
Upf3bQ3ULL6 Gm38357-201ENSMUST00000195382 2464 ntBASIC11.35□□□□□ -0.59
Upf3bQ3ULL6 Myh13-201ENSMUST00000081911 5817 ntAPPRIS P1 TSL 5 BASIC11.35□□□□□ -0.59
Upf3bQ3ULL6 Zfp423-203ENSMUST00000165770 4334 ntTSL 1 (best) BASIC11.35□□□□□ -0.59
Upf3bQ3ULL6 Uhrf1-202ENSMUST00000113035 3402 ntAPPRIS ALT2 TSL 1 (best) BASIC11.35□□□□□ -0.59
Upf3bQ3ULL6 Gm16429-202ENSMUST00000201400 1848 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
Upf3bQ3ULL6 Gm7971-201ENSMUST00000086950 1848 ntAPPRIS P1 TSL 5 BASIC11.35□□□□□ -0.59
Upf3bQ3ULL6 Gm44056-201ENSMUST00000204623 1427 ntBASIC11.35□□□□□ -0.59
Upf3bQ3ULL6 Sgk3-203ENSMUST00000168907 3779 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
Upf3bQ3ULL6 Grik1-201ENSMUST00000023652 3554 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
Upf3bQ3ULL6 Imp4-201ENSMUST00000027303 5836 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
Upf3bQ3ULL6 Anxa7-201ENSMUST00000065504 2851 ntAPPRIS P2 TSL 1 (best) BASIC11.34□□□□□ -0.59
Upf3bQ3ULL6 Srrm4-202ENSMUST00000139425 2798 ntTSL 1 (best) BASIC11.34□□□□□ -0.59
Upf3bQ3ULL6 Arap1-201ENSMUST00000084895 4404 ntTSL 1 (best) BASIC11.34□□□□□ -0.59
Upf3bQ3ULL6 Ppp1r10-201ENSMUST00000087210 4222 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
Upf3bQ3ULL6 CT010480.4-201ENSMUST00000224654 2283 ntBASIC11.34□□□□□ -0.59
Upf3bQ3ULL6 Gm39464-201ENSMUST00000214091 2169 ntTSL 5 BASIC11.34□□□□□ -0.59
Upf3bQ3ULL6 Gm32511-202ENSMUST00000217021 2069 ntTSL 1 (best) BASIC11.34□□□□□ -0.59
Upf3bQ3ULL6 Phip-201ENSMUST00000034787 10756 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
Upf3bQ3ULL6 Olfr1349-207ENSMUST00000216447 2448 ntAPPRIS P1 TSL 5 BASIC11.34□□□□□ -0.59
Upf3bQ3ULL6 Ywhaz-201ENSMUST00000022894 3288 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
Upf3bQ3ULL6 Serac1-202ENSMUST00000097432 4007 ntAPPRIS ALT2 TSL 1 (best) BASIC11.34□□□□□ -0.59
Upf3bQ3ULL6 Slc44a4-202ENSMUST00000169230 2246 ntTSL 1 (best) BASIC11.34□□□□□ -0.59
Upf3bQ3ULL6 Ccdc32-203ENSMUST00000110834 828 ntTSL 1 (best) BASIC11.34□□□□□ -0.59
Upf3bQ3ULL6 Gm11919-201ENSMUST00000117609 721 ntBASIC11.34□□□□□ -0.59
Retrieved 100 of 76,532 protein–RNA pairs in 46 ms