Protein–RNA interactions for Protein: P48377

Rfx1, MHC class II regulatory factor RFX1, mousemouse

Predictions only

Length 963 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx1P48377 Habp2-202ENSMUST00000095948 2815 ntAPPRIS P2 TSL 1 (best) BASIC12.64□□□□□ -0.39
Rfx1P48377 Cenpo-202ENSMUST00000111169 1550 ntAPPRIS ALT2 TSL 1 (best) BASIC12.64□□□□□ -0.39
Rfx1P48377 Fam222b-203ENSMUST00000155571 3358 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Rfx1P48377 Gm26614-201ENSMUST00000180386 3909 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
Rfx1P48377 Gmip-201ENSMUST00000036074 3933 ntAPPRIS P2 TSL 1 (best) BASIC12.64□□□□□ -0.39
Rfx1P48377 Gabarapl2-201ENSMUST00000034428 1677 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Rfx1P48377 Zfp384-201ENSMUST00000046064 3108 ntTSL 5 BASIC12.64□□□□□ -0.39
Rfx1P48377 Evc-203ENSMUST00000114154 3695 ntAPPRIS ALT2 TSL 1 (best) BASIC12.64□□□□□ -0.39
Rfx1P48377 Rbm27-201ENSMUST00000046972 6134 ntAPPRIS ALT2 TSL 5 BASIC12.64□□□□□ -0.39
Rfx1P48377 Kif2b-201ENSMUST00000061019 2244 ntAPPRIS P1 BASIC12.64□□□□□ -0.39
Rfx1P48377 Lgi1-204ENSMUST00000196090 1789 ntTSL 5 BASIC12.64□□□□□ -0.39
Rfx1P48377 Gm26540-201ENSMUST00000181858 1310 ntTSL 5 BASIC12.63□□□□□ -0.39
Rfx1P48377 Srp54a-207ENSMUST00000110708 3646 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Rfx1P48377 4930478P22Rik-203ENSMUST00000202026 2060 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
Rfx1P48377 Dhx35-202ENSMUST00000109478 3284 ntAPPRIS P1 TSL 5 BASIC12.63□□□□□ -0.39
Rfx1P48377 Supt3-201ENSMUST00000050630 1508 ntAPPRIS P2 TSL 1 (best) BASIC12.63□□□□□ -0.39
Rfx1P48377 Kit-201ENSMUST00000005815 5214 ntAPPRIS P3 TSL 1 (best) BASIC12.63□□□□□ -0.39
Rfx1P48377 Pogk-206ENSMUST00000169324 7034 ntAPPRIS ALT2 TSL 3 BASIC12.63□□□□□ -0.39
Rfx1P48377 Zfp958-202ENSMUST00000202692 2364 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Rfx1P48377 Il1f5-206ENSMUST00000168941 1722 ntAPPRIS P1 TSL 5 BASIC12.63□□□□□ -0.39
Rfx1P48377 Col6a3-201ENSMUST00000056925 10106 ntTSL 5 BASIC12.63□□□□□ -0.39
Rfx1P48377 Plscr2-205ENSMUST00000180154 1900 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Rfx1P48377 Scp2-202ENSMUST00000106701 772 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
Rfx1P48377 Fam71e1-201ENSMUST00000107927 862 ntAPPRIS P2 TSL 1 (best) BASIC12.63□□□□□ -0.39
Rfx1P48377 Olfr1267-ps1-201ENSMUST00000118957 930 ntAPPRIS P1 BASIC12.63□□□□□ -0.39
Rfx1P48377 Gm829-202ENSMUST00000146622 722 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
Rfx1P48377 Gm25732-201ENSMUST00000175168 60 ntBASIC12.63□□□□□ -0.39
Rfx1P48377 Gm21092-201ENSMUST00000178995 955 ntBASIC12.63□□□□□ -0.39
Rfx1P48377 4930430O22Rik-202ENSMUST00000202548 579 ntBASIC12.63□□□□□ -0.39
Rfx1P48377 AC134248.1-201ENSMUST00000216113 1176 ntBASIC12.63□□□□□ -0.39
Rfx1P48377 AC129323.1-201ENSMUST00000216733 470 ntBASIC12.63□□□□□ -0.39
Rfx1P48377 Gm9176-201ENSMUST00000219955 1120 ntBASIC12.63□□□□□ -0.39
Rfx1P48377 AC154431.1-201ENSMUST00000224910 880 ntBASIC12.63□□□□□ -0.39
Rfx1P48377 Spata24-201ENSMUST00000025209 701 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Rfx1P48377 Olfr959-201ENSMUST00000079178 1055 ntAPPRIS P1 BASIC12.63□□□□□ -0.39
Rfx1P48377 Spata24-202ENSMUST00000096573 709 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
Rfx1P48377 Mak-203ENSMUST00000165087 3562 ntAPPRIS ALT2 TSL 1 (best) BASIC12.63□□□□□ -0.39
Rfx1P48377 Sfxn5-201ENSMUST00000045846 3656 ntAPPRIS P2 TSL 1 (best) BASIC12.63□□□□□ -0.39
Rfx1P48377 Ecsit-204ENSMUST00000180180 1676 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Rfx1P48377 Gm17745-201ENSMUST00000212186 1692 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
Rfx1P48377 Agbl4-202ENSMUST00000097920 1798 ntAPPRIS P4 TSL 1 (best) BASIC12.63□□□□□ -0.39
Rfx1P48377 Rbfox2-203ENSMUST00000166610 6573 ntAPPRIS P2 TSL 1 (best) BASIC12.63□□□□□ -0.39
Rfx1P48377 Gm45768-201ENSMUST00000206763 3202 ntBASIC12.63□□□□□ -0.39
Rfx1P48377 Ank3-242ENSMUST00000183261 4999 ntTSL 5 BASIC12.63□□□□□ -0.39
Rfx1P48377 Rpgr-202ENSMUST00000072393 2380 ntAPPRIS ALT2 TSL 2 BASIC12.63□□□□□ -0.39
Rfx1P48377 Olfr222-202ENSMUST00000214351 2474 ntAPPRIS P1 TSL 5 BASIC12.63□□□□□ -0.39
Rfx1P48377 Cldn12-207ENSMUST00000179804 3752 ntAPPRIS P1 TSL 3 BASIC12.63□□□□□ -0.39
Rfx1P48377 Gm7405-201ENSMUST00000121476 1337 ntBASIC12.62□□□□□ -0.39
Rfx1P48377 Txk-203ENSMUST00000197313 2190 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
Rfx1P48377 Gm37975-201ENSMUST00000195494 2099 ntBASIC12.62□□□□□ -0.39
Rfx1P48377 Olfr287-204ENSMUST00000170618 1776 ntAPPRIS P1 TSL 2 BASIC12.62□□□□□ -0.39
Rfx1P48377 Gm15604-201ENSMUST00000118350 1456 ntBASIC12.62□□□□□ -0.39
Rfx1P48377 Prkaca-202ENSMUST00000211558 1399 ntTSL 5 BASIC12.62□□□□□ -0.39
Rfx1P48377 Smarcc2-203ENSMUST00000105235 4032 ntAPPRIS ALT2 TSL 1 (best) BASIC12.62□□□□□ -0.39
Rfx1P48377 Rpl23-201ENSMUST00000103146 1059 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Rfx1P48377 Polr2i-203ENSMUST00000108193 488 ntTSL 3 BASIC12.62□□□□□ -0.39
Rfx1P48377 Gm15197-201ENSMUST00000120526 478 ntBASIC12.62□□□□□ -0.39
Rfx1P48377 Gm16226-204ENSMUST00000162639 423 ntTSL 3 BASIC12.62□□□□□ -0.39
Rfx1P48377 Tmem267-202ENSMUST00000176171 880 ntAPPRIS P1 TSL 2 BASIC12.62□□□□□ -0.39
Rfx1P48377 Wdr53-204ENSMUST00000178573 1153 ntAPPRIS P1 TSL 5 BASIC12.62□□□□□ -0.39
Rfx1P48377 Gm35584-201ENSMUST00000191767 641 ntTSL 5 BASIC12.62□□□□□ -0.39
Rfx1P48377 Gm43163-201ENSMUST00000196571 442 ntBASIC12.62□□□□□ -0.39
Rfx1P48377 Id2-203ENSMUST00000222667 958 ntBASIC12.62□□□□□ -0.39
Rfx1P48377 AC093022.1-201ENSMUST00000226949 1072 ntBASIC12.62□□□□□ -0.39
Rfx1P48377 Rpl34-202ENSMUST00000079085 480 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Rfx1P48377 Hist1h2bl-201ENSMUST00000091756 381 ntAPPRIS P1 BASIC12.62□□□□□ -0.39
Rfx1P48377 Tcaf1-202ENSMUST00000045140 5256 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Rfx1P48377 Hdac7-208ENSMUST00000121514 3767 ntAPPRIS ALT2 TSL 1 (best) BASIC12.62□□□□□ -0.39
Rfx1P48377 Anks1b-210ENSMUST00000182113 3553 ntTSL 5 BASIC12.62□□□□□ -0.39
Rfx1P48377 Gpm6b-204ENSMUST00000112226 3174 ntAPPRIS ALT1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Rfx1P48377 Odf2-205ENSMUST00000113757 3082 ntAPPRIS ALT2 TSL 5 BASIC12.62□□□□□ -0.39
Rfx1P48377 Plxnb3-201ENSMUST00000002079 6030 ntAPPRIS P1 TSL 5 BASIC12.62□□□□□ -0.39
Rfx1P48377 Gm12532-201ENSMUST00000148448 2684 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
Rfx1P48377 Gm42974-201ENSMUST00000199556 2654 ntBASIC12.62□□□□□ -0.39
Rfx1P48377 Fhitos-201ENSMUST00000160149 1511 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
Rfx1P48377 Duoxa1-203ENSMUST00000110538 2467 ntTSL 5 BASIC12.62□□□□□ -0.39
Rfx1P48377 Col11a1-201ENSMUST00000092155 7667 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Rfx1P48377 Kng1-202ENSMUST00000039492 1985 ntAPPRIS P3 TSL 1 (best) BASIC12.61□□□□□ -0.39
Rfx1P48377 Armc2-201ENSMUST00000095729 4855 ntAPPRIS P1 TSL 5 BASIC12.61□□□□□ -0.39
Rfx1P48377 Pdlim5-204ENSMUST00000168967 1755 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Rfx1P48377 Eftud2-212ENSMUST00000173679 2889 ntTSL 5 BASIC12.61□□□□□ -0.39
Rfx1P48377 Cep350-204ENSMUST00000138762 13307 ntAPPRIS P1 TSL 5 BASIC12.61□□□□□ -0.39
Rfx1P48377 Gsdmc3-203ENSMUST00000190682 2140 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Rfx1P48377 Cd3e-201ENSMUST00000102832 1462 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Rfx1P48377 Itsn1-204ENSMUST00000113993 3787 ntTSL 5 BASIC12.61□□□□□ -0.39
Rfx1P48377 Zfp568-204ENSMUST00000177931 2013 ntAPPRIS ALT2 TSL 5 BASIC12.61□□□□□ -0.39
Rfx1P48377 Olfr315-202ENSMUST00000203256 2458 ntAPPRIS P1 TSL 3 BASIC12.61□□□□□ -0.39
Rfx1P48377 Atxn1-203ENSMUST00000180110 3901 ntAPPRIS ALT2 TSL 1 (best) BASIC12.61□□□□□ -0.39
Rfx1P48377 Mir1893-201ENSMUST00000122565 83 ntBASIC12.61□□□□□ -0.39
Rfx1P48377 Gm4577-201ENSMUST00000135203 716 ntTSL 3 BASIC12.61□□□□□ -0.39
Rfx1P48377 Gng2-203ENSMUST00000159073 960 ntAPPRIS P1 TSL 2 BASIC12.61□□□□□ -0.39
Rfx1P48377 Gm29346-201ENSMUST00000188147 255 ntTSL 3 BASIC12.61□□□□□ -0.39
Rfx1P48377 Mir124-2hg-207ENSMUST00000189868 535 ntTSL 2 BASIC12.61□□□□□ -0.39
Rfx1P48377 Gm8197-202ENSMUST00000193422 934 ntBASIC12.61□□□□□ -0.39
Rfx1P48377 Gm43634-201ENSMUST00000202671 675 ntTSL 3 BASIC12.61□□□□□ -0.39
Rfx1P48377 AC122350.1-201ENSMUST00000228135 533 ntBASIC12.61□□□□□ -0.39
Rfx1P48377 Smco2-201ENSMUST00000032433 1276 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Rfx1P48377 1500002C15Rik-201ENSMUST00000178987 2183 ntBASIC12.61□□□□□ -0.39
Rfx1P48377 Ssb-206ENSMUST00000166411 2088 ntAPPRIS P1 TSL 5 BASIC12.61□□□□□ -0.39
Rfx1P48377 Gm44798-201ENSMUST00000208123 2410 ntBASIC12.61□□□□□ -0.39
Retrieved 100 of 76,532 protein–RNA pairs in 39.7 ms