Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Kif2b-201ENSMUST00000061019 2244 ntAPPRIS P1 BASIC8.7□□□□□ -1.02
Hmgb3O54879 Gm10031-201ENSMUST00000190422 2653 ntAPPRIS P1 BASIC8.7□□□□□ -1.02
Hmgb3O54879 Etfrf1-207ENSMUST00000111726 1374 ntAPPRIS P1 TSL 1 (best) BASIC8.7□□□□□ -1.02
Hmgb3O54879 Lgals4-201ENSMUST00000066723 1384 ntAPPRIS P2 TSL 1 (best) BASIC8.7□□□□□ -1.02
Hmgb3O54879 Lin54-210ENSMUST00000154921 3734 ntTSL 5 BASIC8.7□□□□□ -1.02
Hmgb3O54879 Prg4-201ENSMUST00000006171 1869 ntTSL 1 (best) BASIC8.7□□□□□ -1.02
Hmgb3O54879 Ppp4r1-204ENSMUST00000160664 3784 ntAPPRIS ALT2 TSL 1 (best) BASIC8.7□□□□□ -1.02
Hmgb3O54879 Pi4ka-211ENSMUST00000154364 6630 ntAPPRIS P1 TSL 1 (best) BASIC8.7□□□□□ -1.02
Hmgb3O54879 Dpf2-205ENSMUST00000136983 3314 ntAPPRIS P1 TSL 1 (best) BASIC8.7□□□□□ -1.02
Hmgb3O54879 Oprm1-203ENSMUST00000056385 1440 ntAPPRIS P2 TSL 1 (best) BASIC8.7□□□□□ -1.02
Hmgb3O54879 Colq-205ENSMUST00000150054 2867 ntTSL 5 BASIC8.7□□□□□ -1.02
Hmgb3O54879 Tcn2-205ENSMUST00000109991 1943 ntAPPRIS P1 TSL 5 BASIC8.7□□□□□ -1.02
Hmgb3O54879 2310002L09Rik-202ENSMUST00000095023 1929 ntAPPRIS ALT2 TSL 1 (best) BASIC8.7□□□□□ -1.02
Hmgb3O54879 Gpr75-201ENSMUST00000109430 2926 ntAPPRIS P1 TSL 1 (best) BASIC8.7□□□□□ -1.02
Hmgb3O54879 Tmco4-201ENSMUST00000043042 2922 ntAPPRIS P1 TSL 1 (best) BASIC8.7□□□□□ -1.02
Hmgb3O54879 Bcat1-201ENSMUST00000032402 7833 ntTSL 1 (best) BASIC8.7□□□□□ -1.02
Hmgb3O54879 Cyp51-201ENSMUST00000001507 3931 ntAPPRIS P1 TSL 1 (best) BASIC8.7□□□□□ -1.02
Hmgb3O54879 Cdc42ep2-201ENSMUST00000055458 1491 ntAPPRIS P1 TSL 1 (best) BASIC8.7□□□□□ -1.02
Hmgb3O54879 Sqor-202ENSMUST00000110506 1985 ntAPPRIS P1 TSL 1 (best) BASIC8.7□□□□□ -1.02
Hmgb3O54879 Cd160-203ENSMUST00000165991 2458 ntAPPRIS ALT2 TSL 3 BASIC8.7□□□□□ -1.02
Hmgb3O54879 Pomgnt1-204ENSMUST00000120083 2953 ntAPPRIS P1 TSL 5 BASIC8.7□□□□□ -1.02
Hmgb3O54879 5430416N02Rik-201ENSMUST00000180779 3486 ntTSL 1 (best) BASIC8.7□□□□□ -1.02
Hmgb3O54879 Elmo1-201ENSMUST00000072519 5464 ntAPPRIS P1 TSL 1 (best) BASIC8.7□□□□□ -1.02
Hmgb3O54879 Ube2f-203ENSMUST00000171165 5654 ntAPPRIS P1 TSL 1 (best) BASIC8.69□□□□□ -1.02
Hmgb3O54879 Ogfod1-201ENSMUST00000060632 5214 ntAPPRIS ALT2 TSL 1 (best) BASIC8.69□□□□□ -1.02
Hmgb3O54879 Snhg17-203ENSMUST00000141809 1553 ntTSL 1 (best) BASIC8.69□□□□□ -1.02
Hmgb3O54879 Edn1-201ENSMUST00000021796 2139 ntAPPRIS P1 TSL 1 (best) BASIC8.69□□□□□ -1.02
Hmgb3O54879 Dhdds-209ENSMUST00000144668 3219 ntAPPRIS P2 TSL 1 (best) BASIC8.69□□□□□ -1.02
Hmgb3O54879 Grik1-211ENSMUST00000228188 3221 ntBASIC8.69□□□□□ -1.02
Hmgb3O54879 Pkd1l3-201ENSMUST00000057344 6456 ntAPPRIS P3 TSL 1 (best) BASIC8.69□□□□□ -1.02
Hmgb3O54879 Timeless-205ENSMUST00000105244 4341 ntAPPRIS ALT2 TSL 1 (best) BASIC8.69□□□□□ -1.02
Hmgb3O54879 Mgl2-205ENSMUST00000165951 1635 ntAPPRIS ALT2 TSL 1 (best) BASIC8.69□□□□□ -1.02
Hmgb3O54879 Grin2a-201ENSMUST00000032331 4395 ntAPPRIS P1 TSL 1 (best) BASIC8.69□□□□□ -1.02
Hmgb3O54879 Brca1-201ENSMUST00000017290 6572 ntAPPRIS P1 TSL 1 (best) BASIC8.69□□□□□ -1.02
Hmgb3O54879 Mmrn2-201ENSMUST00000111908 3974 ntAPPRIS P1 TSL 1 (best) BASIC8.69□□□□□ -1.02
Hmgb3O54879 Pfkm-201ENSMUST00000051226 2880 ntAPPRIS P1 TSL 1 (best) BASIC8.69□□□□□ -1.02
Hmgb3O54879 Itga7-201ENSMUST00000099112 4013 ntAPPRIS P2 TSL 2 BASIC8.69□□□□□ -1.02
Hmgb3O54879 Tacc2-208ENSMUST00000207549 3492 ntAPPRIS ALT2 TSL 1 (best) BASIC8.69□□□□□ -1.02
Hmgb3O54879 Gm11298-201ENSMUST00000120503 1799 ntBASIC8.69□□□□□ -1.02
Hmgb3O54879 Pced1b-204ENSMUST00000228521 1790 ntAPPRIS P1 BASIC8.69□□□□□ -1.02
Hmgb3O54879 Nek5-201ENSMUST00000169834 2404 ntAPPRIS P3 TSL 1 (best) BASIC8.69□□□□□ -1.02
Hmgb3O54879 Adamts4-201ENSMUST00000111314 3761 ntAPPRIS ALT2 TSL 1 (best) BASIC8.69□□□□□ -1.02
Hmgb3O54879 Atg9a-201ENSMUST00000040689 3764 ntAPPRIS P1 TSL 1 (best) BASIC8.69□□□□□ -1.02
Hmgb3O54879 Syk-202ENSMUST00000118756 2519 ntAPPRIS ALT2 TSL 1 (best) BASIC8.69□□□□□ -1.02
Hmgb3O54879 Ltc4s-201ENSMUST00000101265 480 ntTSL 1 (best) BASIC8.69□□□□□ -1.02
Hmgb3O54879 Sfxn5-204ENSMUST00000113788 514 ntTSL 1 (best) BASIC8.69□□□□□ -1.02
Hmgb3O54879 Camk2a-205ENSMUST00000115297 499 ntTSL 2 BASIC8.69□□□□□ -1.02
Hmgb3O54879 Gm14724-201ENSMUST00000118400 537 ntBASIC8.69□□□□□ -1.02
Hmgb3O54879 Gm13461-201ENSMUST00000120980 662 ntBASIC8.69□□□□□ -1.02
Hmgb3O54879 Gm14381-201ENSMUST00000122105 414 ntBASIC8.69□□□□□ -1.02
Hmgb3O54879 Asb8-202ENSMUST00000123626 1100 ntAPPRIS P1 TSL 1 (best) BASIC8.69□□□□□ -1.02
Hmgb3O54879 Asb8-203ENSMUST00000123922 1162 ntAPPRIS P1 TSL 3 BASIC8.69□□□□□ -1.02
Hmgb3O54879 Atpif1-203ENSMUST00000152993 462 ntTSL 2 BASIC8.69□□□□□ -1.02
Hmgb3O54879 Gzmc-201ENSMUST00000015585 894 ntAPPRIS P1 TSL 1 (best) BASIC8.69□□□□□ -1.02
Hmgb3O54879 Gm19246-201ENSMUST00000173599 255 ntBASIC8.69□□□□□ -1.02
Hmgb3O54879 Mir8109-201ENSMUST00000184375 117 ntBASIC8.69□□□□□ -1.02
Hmgb3O54879 Gm42797-201ENSMUST00000197573 494 ntTSL 3 BASIC8.69□□□□□ -1.02
Hmgb3O54879 Gm2965-201ENSMUST00000198365 343 ntBASIC8.69□□□□□ -1.02
Hmgb3O54879 Gng8-204ENSMUST00000205716 432 ntAPPRIS P1 TSL 3 BASIC8.69□□□□□ -1.02
Hmgb3O54879 Cdipt-202ENSMUST00000205830 805 ntTSL 2 BASIC8.69□□□□□ -1.02
Hmgb3O54879 Gm30459-201ENSMUST00000206203 1193 ntTSL 1 (best) BASIC8.69□□□□□ -1.02
Hmgb3O54879 Zfp787-205ENSMUST00000207957 880 ntTSL 5 BASIC8.69□□□□□ -1.02
Hmgb3O54879 Gm19091-201ENSMUST00000208120 978 ntBASIC8.69□□□□□ -1.02
Hmgb3O54879 Nt5dc1-206ENSMUST00000213269 802 ntTSL 5 BASIC8.69□□□□□ -1.02
Hmgb3O54879 Sdf2-201ENSMUST00000002133 1268 ntAPPRIS P1 TSL 1 (best) BASIC8.69□□□□□ -1.02
Hmgb3O54879 5830428M24Rik-201ENSMUST00000221805 825 ntTSL 2 BASIC8.69□□□□□ -1.02
Hmgb3O54879 AC144543.1-201ENSMUST00000221840 1064 ntTSL 1 (best) BASIC8.69□□□□□ -1.02
Hmgb3O54879 H2-M10.2-201ENSMUST00000023845 1113 ntAPPRIS P1 TSL 1 (best) BASIC8.69□□□□□ -1.02
Hmgb3O54879 Rassf8-202ENSMUST00000058538 1131 ntBASIC8.69□□□□□ -1.02
Hmgb3O54879 Pvalb-201ENSMUST00000005860 977 ntAPPRIS P1 TSL 1 (best) BASIC8.69□□□□□ -1.02
Hmgb3O54879 Dnal4-202ENSMUST00000069877 1011 ntTSL 5 BASIC8.69□□□□□ -1.02
Hmgb3O54879 Gm11562-201ENSMUST00000073853 817 ntAPPRIS P1 BASIC8.69□□□□□ -1.02
Hmgb3O54879 Gm10478-201ENSMUST00000084451 396 ntBASIC8.69□□□□□ -1.02
Hmgb3O54879 Olfr1199-201ENSMUST00000099813 933 ntAPPRIS P1 BASIC8.69□□□□□ -1.02
Hmgb3O54879 2310043P16Rik-201ENSMUST00000205403 3881 ntBASIC8.69□□□□□ -1.02
Hmgb3O54879 Col4a5-202ENSMUST00000112931 6536 ntAPPRIS P1 TSL 1 (best) BASIC8.69□□□□□ -1.02
Hmgb3O54879 Gm10093-201ENSMUST00000079363 1977 ntAPPRIS P1 BASIC8.69□□□□□ -1.02
Hmgb3O54879 Atp6v1e1-201ENSMUST00000019354 1312 ntAPPRIS P1 TSL 1 (best) BASIC8.69□□□□□ -1.02
Hmgb3O54879 Csmd2-205ENSMUST00000184063 13555 ntAPPRIS P1 TSL 5 BASIC8.69□□□□□ -1.02
Hmgb3O54879 Ppcdc-201ENSMUST00000085709 2744 ntAPPRIS P1 TSL 1 (best) BASIC8.69□□□□□ -1.02
Hmgb3O54879 Mir9-3hg-202ENSMUST00000181511 3412 ntTSL 1 (best) BASIC8.69□□□□□ -1.02
Hmgb3O54879 Prickle2-204ENSMUST00000113447 7679 ntAPPRIS P1 TSL 1 (best) BASIC8.69□□□□□ -1.02
Hmgb3O54879 AC126459.1-201ENSMUST00000214791 2123 ntBASIC8.69□□□□□ -1.02
Hmgb3O54879 Serpine3-201ENSMUST00000171692 1402 ntAPPRIS P1 TSL 1 (best) BASIC8.69□□□□□ -1.02
Hmgb3O54879 Adck1-201ENSMUST00000101165 2158 ntAPPRIS P1 TSL 1 (best) BASIC8.69□□□□□ -1.02
Hmgb3O54879 Calr4-204ENSMUST00000106631 2155 ntTSL 1 (best) BASIC8.69□□□□□ -1.02
Hmgb3O54879 Acsl6-204ENSMUST00000093106 5804 ntAPPRIS ALT1 TSL 1 (best) BASIC8.69□□□□□ -1.02
Hmgb3O54879 Socs6-202ENSMUST00000123826 2921 ntAPPRIS P1 TSL 1 (best) BASIC8.69□□□□□ -1.02
Hmgb3O54879 Fgfr1-213ENSMUST00000167764 2915 ntTSL 1 (best) BASIC8.69□□□□□ -1.02
Hmgb3O54879 Thoc6-202ENSMUST00000095579 1450 ntAPPRIS P1 TSL 1 (best) BASIC8.69□□□□□ -1.02
Hmgb3O54879 H2-Eb2-201ENSMUST00000050325 2209 ntAPPRIS P1 TSL 1 (best) BASIC8.69□□□□□ -1.02
Hmgb3O54879 Parp3-201ENSMUST00000067218 2962 ntAPPRIS P3 TSL 1 (best) BASIC8.69□□□□□ -1.02
Hmgb3O54879 Sms-201ENSMUST00000112529 3717 ntAPPRIS P1 TSL 1 (best) BASIC8.69□□□□□ -1.02
Hmgb3O54879 4933425M03Rik-201ENSMUST00000195991 1544 ntBASIC8.69□□□□□ -1.02
Hmgb3O54879 Gm43633-201ENSMUST00000202455 2330 ntBASIC8.69□□□□□ -1.02
Hmgb3O54879 Elavl1-204ENSMUST00000209010 2317 ntAPPRIS P1 TSL 5 BASIC8.69□□□□□ -1.02
Hmgb3O54879 Rasgrf1-203ENSMUST00000189545 4766 ntTSL 1 (best) BASIC8.69□□□□□ -1.02
Hmgb3O54879 Sidt2-202ENSMUST00000114573 4012 ntTSL 1 (best) BASIC8.69□□□□□ -1.02
Hmgb3O54879 Ptpn7-201ENSMUST00000049449 3261 ntAPPRIS P1 TSL 1 (best) BASIC8.69□□□□□ -1.02
Hmgb3O54879 Hpgd-201ENSMUST00000034026 1683 ntAPPRIS P1 TSL 1 (best) BASIC8.69□□□□□ -1.02
Retrieved 100 of 76,532 protein–RNA pairs in 97.6 ms