Protein–RNA interactions for Protein: P43241

Cdx2, Homeobox protein CDX-2, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx2P43241 Gm2474-201ENSMUST00000195162 559 ntBASIC10.13□□□□□ -0.79
Cdx2P43241 Gm43777-201ENSMUST00000197269 376 ntTSL 3 BASIC10.13□□□□□ -0.79
Cdx2P43241 Gm5881-201ENSMUST00000204737 367 ntBASIC10.13□□□□□ -0.79
Cdx2P43241 Psenen-203ENSMUST00000207747 669 ntAPPRIS P1 TSL 2 BASIC10.13□□□□□ -0.79
Cdx2P43241 Gm45363-201ENSMUST00000210196 1294 ntBASIC10.13□□□□□ -0.79
Cdx2P43241 Tnfrsf14-205ENSMUST00000219534 1173 ntAPPRIS ALT2 TSL 1 (best) BASIC10.13□□□□□ -0.79
Cdx2P43241 Gm26440-201ENSMUST00000082591 129 ntBASIC10.13□□□□□ -0.79
Cdx2P43241 Pcdhga4-201ENSMUST00000194418 4727 ntAPPRIS P1 TSL 1 (best) BASIC10.13□□□□□ -0.79
Cdx2P43241 Nprl3-202ENSMUST00000109389 1642 ntAPPRIS ALT1 TSL 5 BASIC10.13□□□□□ -0.79
Cdx2P43241 Chmp3-201ENSMUST00000059462 2654 ntAPPRIS P1 TSL 1 (best) BASIC10.13□□□□□ -0.79
Cdx2P43241 Rgs3-205ENSMUST00000107424 4084 ntTSL 1 (best) BASIC10.13□□□□□ -0.79
Cdx2P43241 Clip1-202ENSMUST00000063905 4589 ntAPPRIS ALT2 TSL 5 BASIC10.13□□□□□ -0.79
Cdx2P43241 Umod-201ENSMUST00000033263 2625 ntAPPRIS P1 TSL 1 (best) BASIC10.13□□□□□ -0.79
Cdx2P43241 Zfp830-201ENSMUST00000056677 1591 ntAPPRIS P1 BASIC10.13□□□□□ -0.79
Cdx2P43241 Plekha7-206ENSMUST00000182487 3476 ntAPPRIS ALT2 TSL 5 BASIC10.13□□□□□ -0.79
Cdx2P43241 Zfp251-201ENSMUST00000080406 3497 ntAPPRIS P1 TSL 1 (best) BASIC10.13□□□□□ -0.79
Cdx2P43241 Plg-201ENSMUST00000014578 2755 ntAPPRIS P1 TSL 1 (best) BASIC10.13□□□□□ -0.79
Cdx2P43241 Hsf2-204ENSMUST00000220042 2430 ntTSL 5 BASIC10.13□□□□□ -0.79
Cdx2P43241 Abcb8-201ENSMUST00000073076 2939 ntAPPRIS P1 TSL 1 (best) BASIC10.13□□□□□ -0.79
Cdx2P43241 Epha5-206ENSMUST00000113406 4606 ntAPPRIS ALT2 TSL 5 BASIC10.13□□□□□ -0.79
Cdx2P43241 Zfp46-201ENSMUST00000069195 4639 ntAPPRIS P1 TSL 1 (best) BASIC10.13□□□□□ -0.79
Cdx2P43241 Mrvi1-202ENSMUST00000125758 5953 ntAPPRIS ALT2 TSL 2 BASIC10.13□□□□□ -0.79
Cdx2P43241 Gm21319-201ENSMUST00000164517 1863 ntAPPRIS P1 TSL 1 (best) BASIC10.13□□□□□ -0.79
Cdx2P43241 Metap2-208ENSMUST00000181091 1876 ntTSL 1 (best) BASIC10.13□□□□□ -0.79
Cdx2P43241 Evi5l-208ENSMUST00000176825 3728 ntAPPRIS ALT2 TSL 5 BASIC10.12□□□□□ -0.79
Cdx2P43241 Trim25-201ENSMUST00000000284 5566 ntAPPRIS ALT2 TSL 1 (best) BASIC10.12□□□□□ -0.79
Cdx2P43241 Mfsd7a-201ENSMUST00000031455 2508 ntAPPRIS P1 TSL 1 (best) BASIC10.12□□□□□ -0.79
Cdx2P43241 Serpine1-201ENSMUST00000041388 3011 ntAPPRIS P1 TSL 1 (best) BASIC10.12□□□□□ -0.79
Cdx2P43241 Lpar1-203ENSMUST00000107571 3543 ntAPPRIS P3 TSL 5 BASIC10.12□□□□□ -0.79
Cdx2P43241 Smpd4-218ENSMUST00000170273 2166 ntTSL 5 BASIC10.12□□□□□ -0.79
Cdx2P43241 Atp6v1d-201ENSMUST00000021536 3667 ntAPPRIS P1 TSL 1 (best) BASIC10.12□□□□□ -0.79
Cdx2P43241 Lrmp-201ENSMUST00000032396 2319 ntAPPRIS P1 TSL 1 (best) BASIC10.12□□□□□ -0.79
Cdx2P43241 Eif2s3y-201ENSMUST00000091197 1836 ntAPPRIS P1 TSL 1 (best) BASIC10.12□□□□□ -0.79
Cdx2P43241 Gm36211-201ENSMUST00000198171 1497 ntTSL 1 (best) BASIC10.12□□□□□ -0.79
Cdx2P43241 Usp22-201ENSMUST00000041683 4434 ntAPPRIS P1 TSL 1 (best) BASIC10.12□□□□□ -0.79
Cdx2P43241 Als2cl-203ENSMUST00000130386 5056 ntAPPRIS P1 TSL 1 (best) BASIC10.12□□□□□ -0.79
Cdx2P43241 Gm17230-201ENSMUST00000171194 3942 ntBASIC10.12□□□□□ -0.79
Cdx2P43241 Gsdme-205ENSMUST00000170142 2133 ntAPPRIS P2 TSL 1 (best) BASIC10.12□□□□□ -0.79
Cdx2P43241 Mcam-202ENSMUST00000098852 2772 ntAPPRIS ALT2 TSL 1 (best) BASIC10.12□□□□□ -0.79
Cdx2P43241 Gm37969-201ENSMUST00000195777 3409 ntBASIC10.12□□□□□ -0.79
Cdx2P43241 Pnma5-202ENSMUST00000114540 2287 ntAPPRIS P1 TSL 1 (best) BASIC10.12□□□□□ -0.79
Cdx2P43241 Rab14-201ENSMUST00000028238 3081 ntAPPRIS P1 TSL 1 (best) BASIC10.12□□□□□ -0.79
Cdx2P43241 Daxx-207ENSMUST00000174146 2424 ntAPPRIS P2 TSL 1 (best) BASIC10.12□□□□□ -0.79
Cdx2P43241 Gm29358-202ENSMUST00000187941 3227 ntBASIC10.12□□□□□ -0.79
Cdx2P43241 Traf3ip2-201ENSMUST00000019987 2867 ntAPPRIS P1 TSL 1 (best) BASIC10.12□□□□□ -0.79
Cdx2P43241 Gm15958-202ENSMUST00000153479 2087 ntTSL 1 (best) BASIC10.12□□□□□ -0.79
Cdx2P43241 Ighv1-62-3-201ENSMUST00000103532 405 ntAPPRIS P1 BASIC10.12□□□□□ -0.79
Cdx2P43241 Sh3bgrl3-202ENSMUST00000105879 518 ntTSL 3 BASIC10.12□□□□□ -0.79
Cdx2P43241 Guca2b-202ENSMUST00000106309 697 ntAPPRIS ALT2 TSL 3 BASIC10.12□□□□□ -0.79
Cdx2P43241 Snrnp27-201ENSMUST00000001186 885 ntAPPRIS P1 TSL 1 (best) BASIC10.12□□□□□ -0.79
Cdx2P43241 Gm12570-201ENSMUST00000122047 1030 ntBASIC10.12□□□□□ -0.79
Cdx2P43241 4930529I22Rik-201ENSMUST00000131509 589 ntTSL 1 (best) BASIC10.12□□□□□ -0.79
Cdx2P43241 Gm5766-202ENSMUST00000161633 799 ntBASIC10.12□□□□□ -0.79
Cdx2P43241 Muc2-202ENSMUST00000167366 711 ntTSL 5 BASIC10.12□□□□□ -0.79
Cdx2P43241 Gm17107-201ENSMUST00000170983 553 ntBASIC10.12□□□□□ -0.79
Cdx2P43241 Mir3091-201ENSMUST00000175086 76 ntBASIC10.12□□□□□ -0.79
Cdx2P43241 Gm20694-201ENSMUST00000176943 404 ntBASIC10.12□□□□□ -0.79
Cdx2P43241 Gm17797-201ENSMUST00000182175 997 ntBASIC10.12□□□□□ -0.79
Cdx2P43241 Gm28826-201ENSMUST00000190006 488 ntTSL 2 BASIC10.12□□□□□ -0.79
Cdx2P43241 Gm43450-201ENSMUST00000202611 632 ntTSL 3 BASIC10.12□□□□□ -0.79
Cdx2P43241 Prss23os-203ENSMUST00000208814 975 ntTSL 5 BASIC10.12□□□□□ -0.79
Cdx2P43241 Prss23os-204ENSMUST00000209064 972 ntTSL 5 BASIC10.12□□□□□ -0.79
Cdx2P43241 Gm32743-201ENSMUST00000214196 594 ntTSL 3 BASIC10.12□□□□□ -0.79
Cdx2P43241 CAAA01125382.3-201ENSMUST00000215277 643 ntBASIC10.12□□□□□ -0.79
Cdx2P43241 AC134860.5-201ENSMUST00000225071 1249 ntBASIC10.12□□□□□ -0.79
Cdx2P43241 AC174647.1-201ENSMUST00000227419 1271 ntBASIC10.12□□□□□ -0.79
Cdx2P43241 Galp-201ENSMUST00000037553 650 ntAPPRIS P2 TSL 1 (best) BASIC10.12□□□□□ -0.79
Cdx2P43241 Olfr225-201ENSMUST00000055276 1260 ntAPPRIS ALT2 BASIC10.12□□□□□ -0.79
Cdx2P43241 Tfap2b-204ENSMUST00000187754 3023 ntTSL 1 (best) BASIC10.12□□□□□ -0.79
Cdx2P43241 Mei1-201ENSMUST00000089178 3974 ntAPPRIS ALT2 TSL 5 BASIC10.12□□□□□ -0.79
Cdx2P43241 Lrrc55-201ENSMUST00000099930 2217 ntAPPRIS P1 TSL 1 (best) BASIC10.12□□□□□ -0.79
Cdx2P43241 Mark3-208ENSMUST00000221753 2394 ntTSL 5 BASIC10.12□□□□□ -0.79
Cdx2P43241 Acvrl1-201ENSMUST00000000542 3640 ntAPPRIS P1 TSL 1 (best) BASIC10.12□□□□□ -0.79
Cdx2P43241 Gm42849-201ENSMUST00000202834 1584 ntTSL 5 BASIC10.12□□□□□ -0.79
Cdx2P43241 Faf2-201ENSMUST00000026991 1748 ntTSL 1 (best) BASIC10.12□□□□□ -0.79
Cdx2P43241 Asap3-201ENSMUST00000047526 4225 ntAPPRIS P1 TSL 1 (best) BASIC10.12□□□□□ -0.79
Cdx2P43241 Slc19a1-201ENSMUST00000105410 2347 ntAPPRIS P2 TSL 1 (best) BASIC10.12□□□□□ -0.79
Cdx2P43241 Pspc1-201ENSMUST00000022507 4114 ntAPPRIS P2 TSL 1 (best) BASIC10.12□□□□□ -0.79
Cdx2P43241 Celsr3-207ENSMUST00000213524 9930 ntAPPRIS ALT2 TSL 1 (best) BASIC10.12□□□□□ -0.79
Cdx2P43241 Gm6727-201ENSMUST00000204102 1518 ntBASIC10.12□□□□□ -0.79
Cdx2P43241 Gm45076-201ENSMUST00000207517 1517 ntTSL 5 BASIC10.12□□□□□ -0.79
Cdx2P43241 Matr3-216ENSMUST00000190653 1846 ntTSL 5 BASIC10.12□□□□□ -0.79
Cdx2P43241 Ndrg4-203ENSMUST00000080666 2738 ntTSL 1 (best) BASIC10.12□□□□□ -0.79
Cdx2P43241 Car10-206ENSMUST00000107863 3334 ntAPPRIS P1 TSL 1 (best) BASIC10.12□□□□□ -0.79
Cdx2P43241 Bms1-201ENSMUST00000032237 4345 ntAPPRIS P1 TSL 1 (best) BASIC10.11□□□□□ -0.79
Cdx2P43241 Tiparp-201ENSMUST00000047906 4191 ntAPPRIS P1 TSL 1 (best) BASIC10.11□□□□□ -0.79
Cdx2P43241 Tfr2-204ENSMUST00000196471 2839 ntAPPRIS P1 TSL 1 (best) BASIC10.11□□□□□ -0.79
Cdx2P43241 Oraov1-204ENSMUST00000128057 2231 ntAPPRIS ALT2 TSL 1 (best) BASIC10.11□□□□□ -0.79
Cdx2P43241 Zfp932-203ENSMUST00000112540 2081 ntAPPRIS P2 TSL 1 (best) BASIC10.11□□□□□ -0.79
Cdx2P43241 Gm26912-201ENSMUST00000180988 1483 ntTSL 1 (best) BASIC10.11□□□□□ -0.79
Cdx2P43241 Eif5-213ENSMUST00000222388 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC10.11□□□□□ -0.79
Cdx2P43241 Olfr658-202ENSMUST00000210641 2915 ntAPPRIS ALT1 TSL 1 (best) BASIC10.11□□□□□ -0.79
Cdx2P43241 Olfr658-201ENSMUST00000089296 2912 ntAPPRIS P2 TSL 1 (best) BASIC10.11□□□□□ -0.79
Cdx2P43241 Zscan29-201ENSMUST00000079024 2465 ntTSL 5 BASIC10.11□□□□□ -0.79
Cdx2P43241 Rffl-201ENSMUST00000021036 1719 ntTSL 1 (best) BASIC10.11□□□□□ -0.79
Cdx2P43241 Swap70-201ENSMUST00000033325 4027 ntAPPRIS P1 TSL 1 (best) BASIC10.11□□□□□ -0.79
Cdx2P43241 Mb21d1-202ENSMUST00000070742 4049 ntAPPRIS P1 TSL 1 (best) BASIC10.11□□□□□ -0.79
Cdx2P43241 Kcnma1-212ENSMUST00000188285 4440 ntAPPRIS P4 TSL 1 (best) BASIC10.11□□□□□ -0.79
Cdx2P43241 Asl-203ENSMUST00000160129 2413 ntAPPRIS P1 TSL 5 BASIC10.11□□□□□ -0.79
Cdx2P43241 Tmem181b-ps-201ENSMUST00000167717 1413 ntBASIC10.11□□□□□ -0.79
Retrieved 100 of 76,532 protein–RNA pairs in 56.1 ms