Protein–RNA interactions for Protein: P39428

Traf1, TNF receptor-associated factor 1, mousemouse

Predictions only

Length 409 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Traf1P39428 Gm40879-201ENSMUST00000220759 612 ntBASIC12.38□□□□□ -0.43
Traf1P39428 AC170597.1-201ENSMUST00000221956 440 ntTSL 2 BASIC12.38□□□□□ -0.43
Traf1P39428 CT009713.2-201ENSMUST00000225532 1149 ntBASIC12.38□□□□□ -0.43
Traf1P39428 Mrpl33-201ENSMUST00000031024 478 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Traf1P39428 Rnasek-201ENSMUST00000040428 611 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Traf1P39428 Ttc24-202ENSMUST00000064550 671 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
Traf1P39428 Gm6040-201ENSMUST00000095430 857 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Traf1P39428 Pmp22-201ENSMUST00000018361 1800 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Traf1P39428 Gm26686-201ENSMUST00000181951 3467 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
Traf1P39428 Myo18a-207ENSMUST00000102488 7409 ntAPPRIS P3 TSL 5 BASIC12.38□□□□□ -0.43
Traf1P39428 Gm11470-201ENSMUST00000118868 1475 ntBASIC12.38□□□□□ -0.43
Traf1P39428 Gm26912-201ENSMUST00000180988 1483 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
Traf1P39428 Igsf3-202ENSMUST00000195164 3876 ntAPPRIS ALT2 TSL 5 BASIC12.38□□□□□ -0.43
Traf1P39428 Gm42833-201ENSMUST00000196019 2124 ntBASIC12.38□□□□□ -0.43
Traf1P39428 Sipa1l2-202ENSMUST00000212168 6586 ntAPPRIS ALT2 TSL 1 (best) BASIC12.38□□□□□ -0.43
Traf1P39428 Ak8-201ENSMUST00000074156 1567 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Traf1P39428 Pitpnc1-202ENSMUST00000103064 6329 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Traf1P39428 Atp1a2-202ENSMUST00000097464 3186 ntTSL 5 BASIC12.38□□□□□ -0.43
Traf1P39428 Pced1b-204ENSMUST00000228521 1790 ntAPPRIS P1 BASIC12.38□□□□□ -0.43
Traf1P39428 Grin2b-202ENSMUST00000111905 7484 ntAPPRIS P1 TSL 5 BASIC12.38□□□□□ -0.43
Traf1P39428 Rnf165-202ENSMUST00000182024 4309 ntTSL 5 BASIC12.38□□□□□ -0.43
Traf1P39428 Tsc22d3-201ENSMUST00000055738 1974 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Traf1P39428 Lman1-201ENSMUST00000048260 3563 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Traf1P39428 Rnf41-201ENSMUST00000096386 3144 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Traf1P39428 Ptpro-201ENSMUST00000077115 5049 ntAPPRIS P3 TSL 1 (best) BASIC12.37□□□□□ -0.43
Traf1P39428 Slc12a8-203ENSMUST00000119173 2382 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Traf1P39428 Ccdc57-201ENSMUST00000056781 3403 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Traf1P39428 Nop2-201ENSMUST00000044200 2597 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Traf1P39428 Satb1-208ENSMUST00000144331 6243 ntAPPRIS P2 TSL 1 (best) BASIC12.37□□□□□ -0.43
Traf1P39428 Pex2-201ENSMUST00000059021 1749 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Traf1P39428 Madd-208ENSMUST00000111370 5879 ntAPPRIS P3 TSL 1 (best) BASIC12.37□□□□□ -0.43
Traf1P39428 Madd-214ENSMUST00000111381 5873 ntAPPRIS ALT2 TSL 2 BASIC12.37□□□□□ -0.43
Traf1P39428 Pip5k1a-205ENSMUST00000107233 3663 ntAPPRIS ALT2 TSL 1 (best) BASIC12.37□□□□□ -0.43
Traf1P39428 Gm5420-201ENSMUST00000071008 2206 ntTSL 2 BASIC12.37□□□□□ -0.43
Traf1P39428 Bcl2-202ENSMUST00000189999 2841 ntBASIC12.37□□□□□ -0.43
Traf1P39428 Vti1a-201ENSMUST00000095950 3405 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Traf1P39428 Arid2-201ENSMUST00000096250 8507 ntAPPRIS P1 TSL 5 BASIC12.37□□□□□ -0.43
Traf1P39428 Unc119-202ENSMUST00000100755 933 ntTSL 2 BASIC12.37□□□□□ -0.43
Traf1P39428 Thegl-203ENSMUST00000118941 746 ntTSL 3 BASIC12.37□□□□□ -0.43
Traf1P39428 Gm13707-201ENSMUST00000123663 600 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Traf1P39428 Gm16619-201ENSMUST00000181817 1210 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Traf1P39428 Myo1h-207ENSMUST00000196676 1256 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Traf1P39428 Ppm1a-205ENSMUST00000222896 1103 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Traf1P39428 Ngp-201ENSMUST00000035061 1222 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Traf1P39428 Mir194-2-201ENSMUST00000083648 86 ntBASIC12.37□□□□□ -0.43
Traf1P39428 Ppp1r16b-202ENSMUST00000052927 6685 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Traf1P39428 Gm42970-201ENSMUST00000196407 1352 ntBASIC12.37□□□□□ -0.43
Traf1P39428 Gpr19-213ENSMUST00000215088 1484 ntTSL 5 BASIC12.37□□□□□ -0.43
Traf1P39428 AC124732.3-201ENSMUST00000221835 1765 ntBASIC12.37□□□□□ -0.43
Traf1P39428 Brd3-201ENSMUST00000028282 5419 ntAPPRIS P3 TSL 5 BASIC12.37□□□□□ -0.43
Traf1P39428 Slc17a8-202ENSMUST00000105295 1863 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Traf1P39428 Smpd4-219ENSMUST00000170366 2256 ntTSL 5 BASIC12.37□□□□□ -0.43
Traf1P39428 Chmp1b-202ENSMUST00000210564 2490 ntAPPRIS P1 BASIC12.37□□□□□ -0.43
Traf1P39428 Recql-202ENSMUST00000100832 3054 ntAPPRIS ALT2 TSL 1 (best) BASIC12.37□□□□□ -0.43
Traf1P39428 Glyctk-202ENSMUST00000112543 4081 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Traf1P39428 Sh3gl2-201ENSMUST00000030212 2822 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Traf1P39428 Immt-205ENSMUST00000166938 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC12.37□□□□□ -0.43
Traf1P39428 Ces3b-202ENSMUST00000093221 2403 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Traf1P39428 Thoc5-201ENSMUST00000038237 2235 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Traf1P39428 Gm16169-202ENSMUST00000162432 2128 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Traf1P39428 Nr1h4-203ENSMUST00000105297 2013 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Traf1P39428 Rufy4-202ENSMUST00000127134 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC12.37□□□□□ -0.43
Traf1P39428 4930579F01Rik-201ENSMUST00000012186 1732 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Traf1P39428 Zfp14-201ENSMUST00000077787 1506 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Traf1P39428 Vwa7-202ENSMUST00000172499 3970 ntAPPRIS ALT2 TSL 1 (best) BASIC12.37□□□□□ -0.43
Traf1P39428 4930594M22Rik-202ENSMUST00000161599 3595 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
Traf1P39428 Inpp5j-201ENSMUST00000044507 3370 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Traf1P39428 Abhd18-201ENSMUST00000108077 3277 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Traf1P39428 Tcof1-204ENSMUST00000176630 4529 ntAPPRIS P3 TSL 5 BASIC12.36□□□□□ -0.43
Traf1P39428 Pex13-201ENSMUST00000020523 4146 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Traf1P39428 Gm5441-201ENSMUST00000186454 5181 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
Traf1P39428 Sema4a-201ENSMUST00000029700 3205 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Traf1P39428 4930512J16Rik-201ENSMUST00000203704 1859 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
Traf1P39428 Tro-202ENSMUST00000087258 6559 ntAPPRIS P3 TSL 1 (best) BASIC12.36□□□□□ -0.43
Traf1P39428 Gm8320-201ENSMUST00000177584 1762 ntBASIC12.36□□□□□ -0.43
Traf1P39428 Gm8303-201ENSMUST00000178371 1762 ntBASIC12.36□□□□□ -0.43
Traf1P39428 Gm8331-201ENSMUST00000178433 1762 ntBASIC12.36□□□□□ -0.43
Traf1P39428 Gm8752-201ENSMUST00000173427 1694 ntBASIC12.36□□□□□ -0.43
Traf1P39428 Gm28774-201ENSMUST00000187087 1498 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
Traf1P39428 Top3a-204ENSMUST00000120417 2318 ntTSL 5 BASIC12.36□□□□□ -0.43
Traf1P39428 Lao1-201ENSMUST00000058651 2349 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Traf1P39428 Dglucy-204ENSMUST00000110073 3184 ntAPPRIS ALT2 TSL 5 BASIC12.36□□□□□ -0.43
Traf1P39428 A930006I01Rik-201ENSMUST00000139065 2229 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
Traf1P39428 Mapre2-203ENSMUST00000118826 3052 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
Traf1P39428 Klk6-201ENSMUST00000107966 1095 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Traf1P39428 Gm12948-201ENSMUST00000119406 682 ntBASIC12.36□□□□□ -0.43
Traf1P39428 Gm15287-201ENSMUST00000132564 751 ntTSL 2 BASIC12.36□□□□□ -0.43
Traf1P39428 Gm12688-201ENSMUST00000136525 701 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
Traf1P39428 Apobr-203ENSMUST00000137646 457 ntAPPRIS ALT2 TSL 2 BASIC12.36□□□□□ -0.43
Traf1P39428 Stk33-205ENSMUST00000141210 949 ntTSL 3 BASIC12.36□□□□□ -0.43
Traf1P39428 Eef1d-217ENSMUST00000151066 704 ntTSL 5 BASIC12.36□□□□□ -0.43
Traf1P39428 Gm5274-201ENSMUST00000182641 1003 ntBASIC12.36□□□□□ -0.43
Traf1P39428 Gm27316-201ENSMUST00000184884 277 ntBASIC12.36□□□□□ -0.43
Traf1P39428 Gm37782-201ENSMUST00000194879 678 ntBASIC12.36□□□□□ -0.43
Traf1P39428 Ghrl-204ENSMUST00000203770 891 ntAPPRIS P3 TSL 1 (best) BASIC12.36□□□□□ -0.43
Traf1P39428 Ghrl-205ENSMUST00000204163 447 ntAPPRIS ALT1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Traf1P39428 H2-Aa-201ENSMUST00000040655 1132 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Traf1P39428 Nfic-201ENSMUST00000020461 3348 ntAPPRIS P3 TSL 1 (best) BASIC12.36□□□□□ -0.43
Traf1P39428 4833418N02Rik-201ENSMUST00000137539 1820 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
Traf1P39428 Myh8-201ENSMUST00000019625 6149 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Retrieved 100 of 76,532 protein–RNA pairs in 34.7 ms