Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Adcy6-201ENSMUST00000096224 6038 ntAPPRIS P2 TSL 1 (best) BASIC11.41□□□□□ -0.58
Upf3bQ3ULL6 Dzip1l-204ENSMUST00000112886 3970 ntAPPRIS ALT2 TSL 1 (best) BASIC11.41□□□□□ -0.58
Upf3bQ3ULL6 Gm26846-201ENSMUST00000181865 4869 ntTSL 5 BASIC11.41□□□□□ -0.58
Upf3bQ3ULL6 Gm5697-201ENSMUST00000122295 2482 ntBASIC11.41□□□□□ -0.58
Upf3bQ3ULL6 Gm13657-201ENSMUST00000135682 1939 ntTSL 1 (best) BASIC11.41□□□□□ -0.58
Upf3bQ3ULL6 Atp9b-201ENSMUST00000091790 5357 ntAPPRIS ALT2 TSL 5 BASIC11.41□□□□□ -0.58
Upf3bQ3ULL6 Mcf2l-217ENSMUST00000145067 5313 ntTSL 1 (best) BASIC11.4□□□□□ -0.58
Upf3bQ3ULL6 Spata31d1a-203ENSMUST00000224982 5325 ntAPPRIS P1 BASIC11.4□□□□□ -0.58
Upf3bQ3ULL6 Rbfox2-203ENSMUST00000166610 6573 ntAPPRIS P2 TSL 1 (best) BASIC11.4□□□□□ -0.58
Upf3bQ3ULL6 Gm40617-201ENSMUST00000218840 2420 ntTSL 1 (best) BASIC11.4□□□□□ -0.58
Upf3bQ3ULL6 Cdh20-201ENSMUST00000062528 4012 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
Upf3bQ3ULL6 Ugt1a10-201ENSMUST00000113142 2244 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
Upf3bQ3ULL6 Thoc5-201ENSMUST00000038237 2235 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
Upf3bQ3ULL6 Lrit3-201ENSMUST00000179187 1683 ntAPPRIS ALT2 TSL 5 BASIC11.4□□□□□ -0.58
Upf3bQ3ULL6 Ift88os-201ENSMUST00000149702 2016 ntTSL 1 (best) BASIC11.4□□□□□ -0.58
Upf3bQ3ULL6 Kif2c-202ENSMUST00000106436 2378 ntAPPRIS ALT2 TSL 5 BASIC11.4□□□□□ -0.58
Upf3bQ3ULL6 AC129336.2-201ENSMUST00000218053 3086 ntBASIC11.4□□□□□ -0.58
Upf3bQ3ULL6 Ikbkb-201ENSMUST00000033939 3580 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
Upf3bQ3ULL6 Tjp1-201ENSMUST00000032729 6102 ntAPPRIS ALT2 TSL 1 (best) BASIC11.4□□□□□ -0.58
Upf3bQ3ULL6 Gm45397-201ENSMUST00000209816 1600 ntTSL 1 (best) BASIC11.4□□□□□ -0.58
Upf3bQ3ULL6 Adig-202ENSMUST00000109484 488 ntTSL 2 BASIC11.4□□□□□ -0.58
Upf3bQ3ULL6 Tmed5-203ENSMUST00000117759 482 ntTSL 1 (best) BASIC11.4□□□□□ -0.58
Upf3bQ3ULL6 Gm5764-201ENSMUST00000118817 885 ntBASIC11.4□□□□□ -0.58
Upf3bQ3ULL6 Gm12628-201ENSMUST00000122193 382 ntBASIC11.4□□□□□ -0.58
Upf3bQ3ULL6 Fam229b-208ENSMUST00000139743 679 ntAPPRIS P1 TSL 5 BASIC11.4□□□□□ -0.58
Upf3bQ3ULL6 Prr33-202ENSMUST00000151580 399 ntTSL 5 BASIC11.4□□□□□ -0.58
Upf3bQ3ULL6 Adora3-202ENSMUST00000164730 1219 ntTSL 1 (best) BASIC11.4□□□□□ -0.58
Upf3bQ3ULL6 9330179D12Rik-201ENSMUST00000180569 1105 ntTSL 1 (best) BASIC11.4□□□□□ -0.58
Upf3bQ3ULL6 Gm28760-202ENSMUST00000190376 481 ntTSL 5 BASIC11.4□□□□□ -0.58
Upf3bQ3ULL6 C230057A21Rik-202ENSMUST00000195781 600 ntTSL 3 BASIC11.4□□□□□ -0.58
Upf3bQ3ULL6 Gm6352-201ENSMUST00000203583 1134 ntBASIC11.4□□□□□ -0.58
Upf3bQ3ULL6 Gm32111-201ENSMUST00000207689 846 ntBASIC11.4□□□□□ -0.58
Upf3bQ3ULL6 Fos-201ENSMUST00000021674 2108 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
Upf3bQ3ULL6 AC113282.2-201ENSMUST00000224012 945 ntAPPRIS P1 BASIC11.4□□□□□ -0.58
Upf3bQ3ULL6 AC113282.3-201ENSMUST00000224757 942 ntAPPRIS P1 BASIC11.4□□□□□ -0.58
Upf3bQ3ULL6 AC154431.1-201ENSMUST00000224910 880 ntBASIC11.4□□□□□ -0.58
Upf3bQ3ULL6 Olfr414-201ENSMUST00000053178 955 ntAPPRIS P1 BASIC11.4□□□□□ -0.58
Upf3bQ3ULL6 Adig-201ENSMUST00000059889 632 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
Upf3bQ3ULL6 Rhox8-201ENSMUST00000071885 1204 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
Upf3bQ3ULL6 4930572O03Rik-201ENSMUST00000092696 1169 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
Upf3bQ3ULL6 Gmps-201ENSMUST00000029405 8105 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
Upf3bQ3ULL6 Zeb2-203ENSMUST00000076836 3913 ntAPPRIS ALT2 TSL 5 BASIC11.4□□□□□ -0.58
Upf3bQ3ULL6 Glb1l2-207ENSMUST00000162702 2555 ntTSL 1 (best) BASIC11.4□□□□□ -0.58
Upf3bQ3ULL6 Tnfrsf9-201ENSMUST00000030808 2099 ntAPPRIS P3 TSL 1 (best) BASIC11.4□□□□□ -0.58
Upf3bQ3ULL6 Gpr143-201ENSMUST00000026383 1586 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
Upf3bQ3ULL6 Btc-201ENSMUST00000121044 2876 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
Upf3bQ3ULL6 Atp13a4-201ENSMUST00000039090 2878 ntTSL 1 (best) BASIC11.4□□□□□ -0.58
Upf3bQ3ULL6 Plrg1-204ENSMUST00000150268 1851 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.59
Upf3bQ3ULL6 Lactb2-201ENSMUST00000027071 4494 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.59
Upf3bQ3ULL6 Rab3gap2-201ENSMUST00000069652 7052 ntAPPRIS P2 TSL 5 BASIC11.4□□□□□ -0.59
Upf3bQ3ULL6 Sirpa-201ENSMUST00000049262 3644 ntAPPRIS ALT2 TSL 1 (best) BASIC11.4□□□□□ -0.59
Upf3bQ3ULL6 Bcl11a-204ENSMUST00000118955 1505 ntTSL 1 (best) BASIC11.4□□□□□ -0.59
Upf3bQ3ULL6 4632415L05Rik-202ENSMUST00000198527 4087 ntBASIC11.4□□□□□ -0.59
Upf3bQ3ULL6 Gm46355-201ENSMUST00000221434 1671 ntTSL 5 BASIC11.4□□□□□ -0.59
Upf3bQ3ULL6 Ern2-201ENSMUST00000033153 2914 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
Upf3bQ3ULL6 March10-201ENSMUST00000049995 3074 ntAPPRIS P1 TSL 5 BASIC11.39□□□□□ -0.59
Upf3bQ3ULL6 Tfam-201ENSMUST00000092430 4167 ntAPPRIS P2 TSL 1 (best) BASIC11.39□□□□□ -0.59
Upf3bQ3ULL6 Cnppd1-202ENSMUST00000168720 3669 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
Upf3bQ3ULL6 Cish-204ENSMUST00000168260 2742 ntTSL 1 (best) BASIC11.39□□□□□ -0.59
Upf3bQ3ULL6 Gpr19-213ENSMUST00000215088 1484 ntTSL 5 BASIC11.39□□□□□ -0.59
Upf3bQ3ULL6 Ubap2-202ENSMUST00000108068 4380 ntAPPRIS ALT2 TSL 1 (best) BASIC11.39□□□□□ -0.59
Upf3bQ3ULL6 Dkk2-201ENSMUST00000029665 3705 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
Upf3bQ3ULL6 Olfr46-203ENSMUST00000214180 7750 ntAPPRIS ALT2 TSL 5 BASIC11.39□□□□□ -0.59
Upf3bQ3ULL6 Tmigd1-202ENSMUST00000102495 1427 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
Upf3bQ3ULL6 Ifitm1-202ENSMUST00000106040 560 ntAPPRIS P1 TSL 3 BASIC11.39□□□□□ -0.59
Upf3bQ3ULL6 Ifitm1-203ENSMUST00000106042 882 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
Upf3bQ3ULL6 Zdhhc21-202ENSMUST00000107239 1148 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
Upf3bQ3ULL6 Tcf7l2-204ENSMUST00000111649 982 ntTSL 1 (best) BASIC11.39□□□□□ -0.59
Upf3bQ3ULL6 Gm15554-201ENSMUST00000120406 913 ntBASIC11.39□□□□□ -0.59
Upf3bQ3ULL6 Gm15965-201ENSMUST00000123318 1428 ntTSL 1 (best) BASIC11.39□□□□□ -0.59
Upf3bQ3ULL6 Gm16217-201ENSMUST00000124182 616 ntTSL 3 BASIC11.39□□□□□ -0.59
Upf3bQ3ULL6 9230111E07Rik-201ENSMUST00000124850 811 ntTSL 1 (best) BASIC11.39□□□□□ -0.59
Upf3bQ3ULL6 4930589P08Rik-201ENSMUST00000129097 1084 ntTSL 1 (best) BASIC11.39□□□□□ -0.59
Upf3bQ3ULL6 C330021F23Rik-204ENSMUST00000151633 1297 ntAPPRIS ALT2 TSL 1 (best) BASIC11.39□□□□□ -0.59
Upf3bQ3ULL6 Gng2-203ENSMUST00000159073 960 ntAPPRIS P1 TSL 2 BASIC11.39□□□□□ -0.59
Upf3bQ3ULL6 Rabggtb-202ENSMUST00000167111 1418 ntTSL 1 (best) BASIC11.39□□□□□ -0.59
Upf3bQ3ULL6 Isl1-202ENSMUST00000176044 1198 ntTSL 1 (best) BASIC11.39□□□□□ -0.59
Upf3bQ3ULL6 A930007I19Rik-201ENSMUST00000180737 2319 ntTSL 1 (best) BASIC11.39□□□□□ -0.59
Upf3bQ3ULL6 4930579F01Rik-202ENSMUST00000199293 1598 ntTSL 1 (best) BASIC11.39□□□□□ -0.59
Upf3bQ3ULL6 Igkv2-116-201ENSMUST00000199327 362 ntBASIC11.39□□□□□ -0.59
Upf3bQ3ULL6 Gm19990-201ENSMUST00000219468 1224 ntTSL 1 (best) BASIC11.39□□□□□ -0.59
Upf3bQ3ULL6 Gstz1-203ENSMUST00000220574 971 ntTSL 2 BASIC11.39□□□□□ -0.59
Upf3bQ3ULL6 Ifitm1-201ENSMUST00000026564 736 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
Upf3bQ3ULL6 Nop10-201ENSMUST00000028553 1109 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
Upf3bQ3ULL6 Tldc1-201ENSMUST00000049156 3085 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
Upf3bQ3ULL6 Col9a1-201ENSMUST00000054588 3834 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
Upf3bQ3ULL6 Mir194-2-201ENSMUST00000083648 86 ntBASIC11.39□□□□□ -0.59
Upf3bQ3ULL6 C330021F23Rik-201ENSMUST00000086479 1111 ntAPPRIS P2 TSL 5 BASIC11.39□□□□□ -0.59
Upf3bQ3ULL6 Plekha7-206ENSMUST00000182487 3476 ntAPPRIS ALT2 TSL 5 BASIC11.39□□□□□ -0.59
Upf3bQ3ULL6 Hepacam-201ENSMUST00000051839 3347 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
Upf3bQ3ULL6 Frmd4b-201ENSMUST00000032146 3159 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
Upf3bQ3ULL6 C130026L21Rik-204ENSMUST00000199587 1838 ntTSL 1 (best) BASIC11.39□□□□□ -0.59
Upf3bQ3ULL6 Amotl1-201ENSMUST00000013220 8957 ntAPPRIS P2 TSL 1 (best) BASIC11.39□□□□□ -0.59
Upf3bQ3ULL6 Zfp14-201ENSMUST00000077787 1506 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
Upf3bQ3ULL6 Tsc22d4-202ENSMUST00000100539 3983 ntAPPRIS P2 TSL 1 (best) BASIC11.39□□□□□ -0.59
Upf3bQ3ULL6 Cabin1-201ENSMUST00000001712 7417 ntAPPRIS P1 TSL 5 BASIC11.39□□□□□ -0.59
Upf3bQ3ULL6 Picalm-201ENSMUST00000049537 3528 ntTSL 1 (best) BASIC11.39□□□□□ -0.59
Upf3bQ3ULL6 Mrgpre-201ENSMUST00000054048 3761 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
Upf3bQ3ULL6 Abl2-202ENSMUST00000166172 10151 ntAPPRIS ALT2 TSL 1 (best) BASIC11.39□□□□□ -0.59
Upf3bQ3ULL6 Pik3cb-201ENSMUST00000035037 6478 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
Retrieved 100 of 76,532 protein–RNA pairs in 64.3 ms