Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 4930432K21Rik-201ENSMUST00000093375 2167 ntAPPRIS ALT2 TSL 1 (best) BASIC8.75□□□□□ -1.01
Hmgb3O54879 Npnt-205ENSMUST00000117456 3383 ntTSL 1 (best) BASIC8.75□□□□□ -1.01
Hmgb3O54879 Pdlim2-201ENSMUST00000022681 1523 ntAPPRIS P1 TSL 1 (best) BASIC8.75□□□□□ -1.01
Hmgb3O54879 Eno2-202ENSMUST00000112476 2386 ntTSL 1 (best) BASIC8.75□□□□□ -1.01
Hmgb3O54879 AC121870.2-201ENSMUST00000214343 1870 ntBASIC8.74□□□□□ -1.01
Hmgb3O54879 Fblim1-203ENSMUST00000105785 3091 ntAPPRIS P1 TSL 1 (best) BASIC8.74□□□□□ -1.01
Hmgb3O54879 Igf2bp2-202ENSMUST00000115379 3078 ntTSL 1 (best) BASIC8.74□□□□□ -1.01
Hmgb3O54879 Itsn1-204ENSMUST00000113993 3787 ntTSL 5 BASIC8.74□□□□□ -1.01
Hmgb3O54879 Amot-201ENSMUST00000112835 6519 ntAPPRIS ALT2 TSL 5 BASIC8.74□□□□□ -1.01
Hmgb3O54879 Gulp1-203ENSMUST00000160854 1399 ntTSL 1 (best) BASIC8.74□□□□□ -1.01
Hmgb3O54879 Brsk1-204ENSMUST00000205666 1398 ntTSL 1 (best) BASIC8.74□□□□□ -1.01
Hmgb3O54879 Pkd1l3-203ENSMUST00000212537 6576 ntAPPRIS ALT2 TSL 1 (best) BASIC8.74□□□□□ -1.01
Hmgb3O54879 Clcn5-201ENSMUST00000004428 8390 ntAPPRIS P1 TSL 1 (best) BASIC8.74□□□□□ -1.01
Hmgb3O54879 Csnk2a1-201ENSMUST00000099224 4206 ntAPPRIS P1 TSL 1 (best) BASIC8.74□□□□□ -1.01
Hmgb3O54879 Habp2-202ENSMUST00000095948 2815 ntAPPRIS P2 TSL 1 (best) BASIC8.74□□□□□ -1.01
Hmgb3O54879 Gm12498-201ENSMUST00000138374 2458 ntTSL 1 (best) BASIC8.74□□□□□ -1.01
Hmgb3O54879 Npy1r-201ENSMUST00000039303 3001 ntAPPRIS P1 TSL 1 (best) BASIC8.74□□□□□ -1.01
Hmgb3O54879 Fkbp15-201ENSMUST00000084527 4264 ntAPPRIS P2 TSL 1 (best) BASIC8.74□□□□□ -1.01
Hmgb3O54879 Lao1-201ENSMUST00000058651 2349 ntAPPRIS P1 TSL 1 (best) BASIC8.74□□□□□ -1.01
Hmgb3O54879 Dcdc2a-202ENSMUST00000069614 6634 ntAPPRIS P3 TSL 1 (best) BASIC8.74□□□□□ -1.01
Hmgb3O54879 Gm45768-201ENSMUST00000206763 3202 ntBASIC8.74□□□□□ -1.01
Hmgb3O54879 Prf1-201ENSMUST00000035419 1968 ntAPPRIS P1 TSL 1 (best) BASIC8.74□□□□□ -1.01
Hmgb3O54879 Gcc1-201ENSMUST00000064377 2859 ntAPPRIS P1 TSL 1 (best) BASIC8.74□□□□□ -1.01
Hmgb3O54879 Gm10681-202ENSMUST00000178221 1605 ntAPPRIS P1 TSL 5 BASIC8.74□□□□□ -1.01
Hmgb3O54879 Pms1-201ENSMUST00000027267 3054 ntAPPRIS P1 TSL 1 (best) BASIC8.74□□□□□ -1.01
Hmgb3O54879 Zfp710-203ENSMUST00000166250 3606 ntAPPRIS ALT2 TSL 1 (best) BASIC8.74□□□□□ -1.01
Hmgb3O54879 Gm23949-201ENSMUST00000104027 127 ntBASIC8.74□□□□□ -1.01
Hmgb3O54879 C330007P06Rik-203ENSMUST00000115249 1145 ntTSL 5 BASIC8.74□□□□□ -1.01
Hmgb3O54879 Gm12380-201ENSMUST00000119012 544 ntBASIC8.74□□□□□ -1.01
Hmgb3O54879 Cfap100-204ENSMUST00000134224 849 ntTSL 1 (best) BASIC8.74□□□□□ -1.01
Hmgb3O54879 Cdpf1-205ENSMUST00000150995 566 ntAPPRIS P1 TSL 3 BASIC8.74□□□□□ -1.01
Hmgb3O54879 Gm24990-201ENSMUST00000157406 323 ntBASIC8.74□□□□□ -1.01
Hmgb3O54879 Gm26361-201ENSMUST00000158868 186 ntBASIC8.74□□□□□ -1.01
Hmgb3O54879 Snhg9-201ENSMUST00000161706 183 ntTSL 1 (best) BASIC8.74□□□□□ -1.01
Hmgb3O54879 H2-M2-202ENSMUST00000171139 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC8.74□□□□□ -1.01
Hmgb3O54879 Spdye4c-203ENSMUST00000178601 1020 ntAPPRIS P1 TSL 1 (best) BASIC8.74□□□□□ -1.01
Hmgb3O54879 Gm38317-201ENSMUST00000195564 343 ntBASIC8.74□□□□□ -1.01
Hmgb3O54879 Gm45433-201ENSMUST00000209386 247 ntBASIC8.74□□□□□ -1.01
Hmgb3O54879 Ndufb3-201ENSMUST00000027193 763 ntAPPRIS P1 TSL 1 (best) BASIC8.74□□□□□ -1.01
Hmgb3O54879 Pbp2-201ENSMUST00000050471 1279 ntAPPRIS P1 BASIC8.74□□□□□ -1.01
Hmgb3O54879 Gm10288-201ENSMUST00000084614 537 ntBASIC8.74□□□□□ -1.01
Hmgb3O54879 Olfr1352-201ENSMUST00000058991 4356 ntAPPRIS P1 TSL 2 BASIC8.74□□□□□ -1.01
Hmgb3O54879 Bbs7-201ENSMUST00000040148 2599 ntAPPRIS ALT1 TSL 1 (best) BASIC8.74□□□□□ -1.01
Hmgb3O54879 Lrrn4cl-201ENSMUST00000096257 2583 ntAPPRIS P1 TSL 1 (best) BASIC8.74□□□□□ -1.01
Hmgb3O54879 Gm26912-201ENSMUST00000180988 1483 ntTSL 1 (best) BASIC8.74□□□□□ -1.01
Hmgb3O54879 Adam1b-201ENSMUST00000079368 3338 ntAPPRIS P1 BASIC8.74□□□□□ -1.01
Hmgb3O54879 1700055D18Rik-202ENSMUST00000186030 3720 ntBASIC8.74□□□□□ -1.01
Hmgb3O54879 Gm28042-202ENSMUST00000129685 4472 ntAPPRIS P5 TSL 5 BASIC8.74□□□□□ -1.01
Hmgb3O54879 Gm13812-201ENSMUST00000118061 1347 ntBASIC8.74□□□□□ -1.01
Hmgb3O54879 Gm13810-201ENSMUST00000118584 1347 ntBASIC8.74□□□□□ -1.01
Hmgb3O54879 Scn11a-202ENSMUST00000215718 5899 ntAPPRIS P1 TSL 1 (best) BASIC8.74□□□□□ -1.01
Hmgb3O54879 Cherp-207ENSMUST00000212991 3646 ntAPPRIS P2 TSL 1 (best) BASIC8.74□□□□□ -1.01
Hmgb3O54879 Gemin8-202ENSMUST00000087169 1928 ntAPPRIS P3 TSL 1 (best) BASIC8.74□□□□□ -1.01
Hmgb3O54879 Lep-201ENSMUST00000069789 3259 ntAPPRIS P1 TSL 1 (best) BASIC8.74□□□□□ -1.01
Hmgb3O54879 Gtf2ird1-206ENSMUST00000111244 3461 ntAPPRIS ALT2 TSL 1 (best) BASIC8.74□□□□□ -1.01
Hmgb3O54879 Zfp384-201ENSMUST00000046064 3108 ntTSL 5 BASIC8.74□□□□□ -1.01
Hmgb3O54879 Olfr1219-202ENSMUST00000213724 5669 ntAPPRIS P1 TSL 5 BASIC8.74□□□□□ -1.01
Hmgb3O54879 Rbm27-202ENSMUST00000091920 6266 ntAPPRIS P2 TSL 1 (best) BASIC8.74□□□□□ -1.01
Hmgb3O54879 Arpp19-205ENSMUST00000168166 3944 ntAPPRIS P1 TSL 2 BASIC8.73□□□□□ -1.01
Hmgb3O54879 Allc-202ENSMUST00000110917 1384 ntAPPRIS P1 TSL 1 (best) BASIC8.73□□□□□ -1.01
Hmgb3O54879 5830437K03Rik-201ENSMUST00000199219 1379 ntBASIC8.73□□□□□ -1.01
Hmgb3O54879 Serpinb9c-202ENSMUST00000110284 1575 ntAPPRIS P3 TSL 1 (best) BASIC8.73□□□□□ -1.01
Hmgb3O54879 Gad1-201ENSMUST00000094934 3355 ntAPPRIS P1 TSL 1 (best) BASIC8.73□□□□□ -1.01
Hmgb3O54879 Sfi1-218ENSMUST00000153425 3759 ntAPPRIS ALT2 TSL 5 BASIC8.73□□□□□ -1.01
Hmgb3O54879 Ntm-201ENSMUST00000075069 3022 ntTSL 1 (best) BASIC8.73□□□□□ -1.01
Hmgb3O54879 Tmem130-201ENSMUST00000061446 2805 ntAPPRIS P1 TSL 1 (best) BASIC8.73□□□□□ -1.01
Hmgb3O54879 Fgf1-202ENSMUST00000115582 2449 ntAPPRIS P1 TSL 1 (best) BASIC8.73□□□□□ -1.01
Hmgb3O54879 Sepsecs-201ENSMUST00000031069 5252 ntAPPRIS P1 TSL 1 (best) BASIC8.73□□□□□ -1.01
Hmgb3O54879 Ncmap-203ENSMUST00000105858 1616 ntAPPRIS P1 TSL 1 (best) BASIC8.73□□□□□ -1.01
Hmgb3O54879 Tmem181b-ps-201ENSMUST00000167717 1413 ntBASIC8.73□□□□□ -1.01
Hmgb3O54879 Dpp6-203ENSMUST00000120555 4703 ntAPPRIS ALT2 TSL 1 (best) BASIC8.73□□□□□ -1.01
Hmgb3O54879 Sfmbt2-205ENSMUST00000116594 7821 ntAPPRIS P3 TSL 1 (best) BASIC8.73□□□□□ -1.01
Hmgb3O54879 Cuzd1-201ENSMUST00000046611 2256 ntAPPRIS P1 TSL 1 (best) BASIC8.73□□□□□ -1.01
Hmgb3O54879 Gm37242-201ENSMUST00000191873 2085 ntBASIC8.73□□□□□ -1.01
Hmgb3O54879 Ralgps2-203ENSMUST00000171292 3346 ntAPPRIS P3 TSL 5 BASIC8.73□□□□□ -1.01
Hmgb3O54879 N4bp2l1-205ENSMUST00000202031 1864 ntTSL 1 (best) BASIC8.73□□□□□ -1.01
Hmgb3O54879 Lrit3-201ENSMUST00000179187 1683 ntAPPRIS ALT2 TSL 5 BASIC8.73□□□□□ -1.01
Hmgb3O54879 Bcat2-208ENSMUST00000211173 1684 ntTSL 1 (best) BASIC8.73□□□□□ -1.01
Hmgb3O54879 Arhgap17-203ENSMUST00000167309 3372 ntAPPRIS ALT2 TSL 1 (best) BASIC8.73□□□□□ -1.01
Hmgb3O54879 Glb1l-201ENSMUST00000113623 2339 ntAPPRIS P1 TSL 5 BASIC8.73□□□□□ -1.01
Hmgb3O54879 Micall2-204ENSMUST00000170773 3157 ntTSL 1 (best) BASIC8.73□□□□□ -1.01
Hmgb3O54879 Ifna7-201ENSMUST00000105143 573 ntAPPRIS P1 BASIC8.73□□□□□ -1.01
Hmgb3O54879 Ccdc28b-202ENSMUST00000106035 821 ntTSL 1 (best) BASIC8.73□□□□□ -1.01
Hmgb3O54879 Ggt6-203ENSMUST00000108499 874 ntTSL 1 (best) BASIC8.73□□□□□ -1.01
Hmgb3O54879 Serf2-202ENSMUST00000110615 876 ntTSL 2 BASIC8.73□□□□□ -1.01
Hmgb3O54879 Nudt1-205ENSMUST00000110827 744 ntAPPRIS P1 TSL 5 BASIC8.73□□□□□ -1.01
Hmgb3O54879 1700071K01Rik-201ENSMUST00000117522 819 ntBASIC8.73□□□□□ -1.01
Hmgb3O54879 Gm15374-201ENSMUST00000119313 844 ntBASIC8.73□□□□□ -1.01
Hmgb3O54879 Gm13822-201ENSMUST00000127563 346 ntTSL 3 BASIC8.73□□□□□ -1.01
Hmgb3O54879 Pdlim2-205ENSMUST00000129174 729 ntTSL 2 BASIC8.73□□□□□ -1.01
Hmgb3O54879 Gm24749-201ENSMUST00000157838 343 ntBASIC8.73□□□□□ -1.01
Hmgb3O54879 Gm3150-201ENSMUST00000166418 204 ntBASIC8.73□□□□□ -1.01
Hmgb3O54879 Rps13-201ENSMUST00000170953 589 ntAPPRIS P1 TSL 1 (best) BASIC8.73□□□□□ -1.01
Hmgb3O54879 Gm7741-201ENSMUST00000181445 989 ntBASIC8.73□□□□□ -1.01
Hmgb3O54879 1110006O24Rik-201ENSMUST00000201728 768 ntBASIC8.73□□□□□ -1.01
Hmgb3O54879 Gm44632-201ENSMUST00000207245 474 ntTSL 2 BASIC8.73□□□□□ -1.01
Hmgb3O54879 Gm9111-201ENSMUST00000219394 709 ntBASIC8.73□□□□□ -1.01
Hmgb3O54879 Gm12216-207ENSMUST00000220191 1073 ntAPPRIS P5 TSL 5 BASIC8.73□□□□□ -1.01
Hmgb3O54879 Treml1-205ENSMUST00000225849 974 ntAPPRIS ALT2 BASIC8.73□□□□□ -1.01
Hmgb3O54879 AC133602.1-201ENSMUST00000227510 509 ntBASIC8.73□□□□□ -1.01
Retrieved 100 of 76,532 protein–RNA pairs in 57.3 ms