Protein–RNA interactions for Protein: Q9CU62

Smc1a, Structural maintenance of chromosomes protein 1A, mousemouse

Known RBP Predictions only

Length 1,233 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smc1aQ9CU62 Gm11735-201ENSMUST00000106377 1581 ntBASIC12.07□□□□□ -0.48
Smc1aQ9CU62 Gm9673-201ENSMUST00000119287 781 ntBASIC12.07□□□□□ -0.48
Smc1aQ9CU62 Gm11651-201ENSMUST00000130673 529 ntTSL 3 BASIC12.07□□□□□ -0.48
Smc1aQ9CU62 Gm15726-201ENSMUST00000144738 509 ntTSL 3 BASIC12.07□□□□□ -0.48
Smc1aQ9CU62 Nr5a1os-201ENSMUST00000146954 926 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
Smc1aQ9CU62 BC016548-202ENSMUST00000153797 805 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
Smc1aQ9CU62 Gm25554-201ENSMUST00000158075 113 ntBASIC12.07□□□□□ -0.48
Smc1aQ9CU62 Itgb1bp1-206ENSMUST00000173729 1701 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Smc1aQ9CU62 Pou6f1-204ENSMUST00000176271 4575 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Smc1aQ9CU62 Gm9081-201ENSMUST00000182346 991 ntBASIC12.07□□□□□ -0.48
Smc1aQ9CU62 Gm19015-201ENSMUST00000184002 1189 ntBASIC12.07□□□□□ -0.48
Smc1aQ9CU62 1700020A23Rik-203ENSMUST00000189961 541 ntAPPRIS P1 TSL 5 BASIC12.07□□□□□ -0.48
Smc1aQ9CU62 Gm43966-201ENSMUST00000203301 612 ntBASIC12.07□□□□□ -0.48
Smc1aQ9CU62 Gm4924-205ENSMUST00000211099 490 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
Smc1aQ9CU62 Gm45572-201ENSMUST00000211774 750 ntTSL 5 BASIC12.07□□□□□ -0.48
Smc1aQ9CU62 Zfp1-202ENSMUST00000211926 1409 ntAPPRIS ALT2 TSL 1 (best) BASIC12.07□□□□□ -0.48
Smc1aQ9CU62 D830035M03Rik-201ENSMUST00000213677 1041 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
Smc1aQ9CU62 Pgap2-201ENSMUST00000033292 1201 ntAPPRIS ALT1 TSL 5 BASIC12.07□□□□□ -0.48
Smc1aQ9CU62 Fam212a-201ENSMUST00000048568 1025 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Smc1aQ9CU62 2310057N15Rik-201ENSMUST00000054223 1028 ntAPPRIS P1 BASIC12.07□□□□□ -0.48
Smc1aQ9CU62 Arl16-201ENSMUST00000076921 911 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Smc1aQ9CU62 Otog-201ENSMUST00000164538 10043 ntAPPRIS P1 TSL 5 BASIC12.07□□□□□ -0.48
Smc1aQ9CU62 Rnf144b-201ENSMUST00000068891 4640 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Smc1aQ9CU62 4933408B17Rik-201ENSMUST00000056932 2362 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Smc1aQ9CU62 Scn8a-201ENSMUST00000082209 11293 ntAPPRIS ALT1 TSL 5 BASIC12.07□□□□□ -0.48
Smc1aQ9CU62 Ttc8-201ENSMUST00000079146 2270 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
Smc1aQ9CU62 Sgsm1-202ENSMUST00000057209 4339 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
Smc1aQ9CU62 Exoc7-202ENSMUST00000106411 3205 ntAPPRIS P3 TSL 1 (best) BASIC12.07□□□□□ -0.48
Smc1aQ9CU62 2410004P03Rik-201ENSMUST00000095823 3437 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Smc1aQ9CU62 Spert-203ENSMUST00000165569 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC12.06□□□□□ -0.48
Smc1aQ9CU62 Pard3-213ENSMUST00000160766 4949 ntAPPRIS ALT2 TSL 5 BASIC12.06□□□□□ -0.48
Smc1aQ9CU62 Kyat1-202ENSMUST00000113659 1367 ntTSL 5 BASIC12.06□□□□□ -0.48
Smc1aQ9CU62 Sez6l-206ENSMUST00000212758 2664 ntTSL 5 BASIC12.06□□□□□ -0.48
Smc1aQ9CU62 Sh3bgrl2-203ENSMUST00000188030 2549 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
Smc1aQ9CU62 Egfr-201ENSMUST00000020329 10208 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Smc1aQ9CU62 Lasp1-201ENSMUST00000043843 3540 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Smc1aQ9CU62 Tyw1-202ENSMUST00000044204 4698 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
Smc1aQ9CU62 Neu2-207ENSMUST00000172222 1715 ntAPPRIS ALT2 TSL 1 (best) BASIC12.06□□□□□ -0.48
Smc1aQ9CU62 Olfr707-205ENSMUST00000214112 1735 ntAPPRIS P1 TSL 5 BASIC12.06□□□□□ -0.48
Smc1aQ9CU62 Kcnma1-213ENSMUST00000188991 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC12.06□□□□□ -0.48
Smc1aQ9CU62 Camk2b-207ENSMUST00000101586 1590 ntTSL 5 BASIC12.06□□□□□ -0.48
Smc1aQ9CU62 H2-M10.3-201ENSMUST00000073546 1593 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Smc1aQ9CU62 Cacna2d1-204ENSMUST00000115281 3412 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
Smc1aQ9CU62 Gckr-202ENSMUST00000201166 2272 ntAPPRIS ALT2 TSL 5 BASIC12.06□□□□□ -0.48
Smc1aQ9CU62 Gm7598-201ENSMUST00000130251 3123 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
Smc1aQ9CU62 1700125H20Rik-202ENSMUST00000100681 687 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
Smc1aQ9CU62 Cdc42se1-203ENSMUST00000107200 637 ntTSL 3 BASIC12.06□□□□□ -0.48
Smc1aQ9CU62 Ice2-202ENSMUST00000117246 1201 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
Smc1aQ9CU62 Gm26989-201ENSMUST00000182608 749 ntBASIC12.06□□□□□ -0.48
Smc1aQ9CU62 Mir6923-201ENSMUST00000184592 72 ntBASIC12.06□□□□□ -0.48
Smc1aQ9CU62 Gm42655-201ENSMUST00000202782 1134 ntBASIC12.06□□□□□ -0.48
Smc1aQ9CU62 Isoc2b-205ENSMUST00000208816 820 ntAPPRIS P1 TSL 3 BASIC12.06□□□□□ -0.48
Smc1aQ9CU62 Tex29-205ENSMUST00000209692 884 ntAPPRIS ALT2 TSL 5 BASIC12.06□□□□□ -0.48
Smc1aQ9CU62 Gm18204-201ENSMUST00000209835 793 ntBASIC12.06□□□□□ -0.48
Smc1aQ9CU62 Gm45500-201ENSMUST00000211676 803 ntBASIC12.06□□□□□ -0.48
Smc1aQ9CU62 Gm6390-201ENSMUST00000215034 589 ntBASIC12.06□□□□□ -0.48
Smc1aQ9CU62 AC113282.2-201ENSMUST00000224012 945 ntAPPRIS P1 BASIC12.06□□□□□ -0.48
Smc1aQ9CU62 AC113282.3-201ENSMUST00000224757 942 ntAPPRIS P1 BASIC12.06□□□□□ -0.48
Smc1aQ9CU62 Hps4-202ENSMUST00000112359 3345 ntAPPRIS P1 TSL 5 BASIC12.06□□□□□ -0.48
Smc1aQ9CU62 AA474408-201ENSMUST00000098110 3339 ntBASIC12.06□□□□□ -0.48
Smc1aQ9CU62 Cped1-201ENSMUST00000115382 2002 ntAPPRIS ALT2 TSL 5 BASIC12.06□□□□□ -0.48
Smc1aQ9CU62 Col9a1-201ENSMUST00000054588 3834 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Smc1aQ9CU62 Ikbkg-204ENSMUST00000114128 1867 ntAPPRIS ALT2 TSL 2 BASIC12.06□□□□□ -0.48
Smc1aQ9CU62 Scamp1-203ENSMUST00000152555 1877 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
Smc1aQ9CU62 Slc23a2-201ENSMUST00000028815 6364 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Smc1aQ9CU62 Arntl2-202ENSMUST00000111636 1713 ntAPPRIS ALT2 TSL 1 (best) BASIC12.06□□□□□ -0.48
Smc1aQ9CU62 Ighmbp2-201ENSMUST00000025751 3720 ntAPPRIS P2 TSL 1 (best) BASIC12.06□□□□□ -0.48
Smc1aQ9CU62 Zfat-205ENSMUST00000162173 3561 ntAPPRIS ALT2 TSL 5 BASIC12.05□□□□□ -0.48
Smc1aQ9CU62 Mcf2l-202ENSMUST00000098927 3215 ntTSL 5 BASIC12.05□□□□□ -0.48
Smc1aQ9CU62 Pla2g4a-201ENSMUST00000070200 2856 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Smc1aQ9CU62 Limch1-201ENSMUST00000038188 5903 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
Smc1aQ9CU62 AC160340.2-201ENSMUST00000220812 3675 ntBASIC12.05□□□□□ -0.48
Smc1aQ9CU62 Fndc7-207ENSMUST00000180063 4820 ntAPPRIS ALT2 TSL 5 BASIC12.05□□□□□ -0.48
Smc1aQ9CU62 Plekha7-207ENSMUST00000182511 4502 ntTSL 2 BASIC12.05□□□□□ -0.48
Smc1aQ9CU62 Ncapd3-205ENSMUST00000216677 5149 ntAPPRIS P2 TSL 1 (best) BASIC12.05□□□□□ -0.48
Smc1aQ9CU62 Hivep2-204ENSMUST00000187083 9268 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Smc1aQ9CU62 Usp5-201ENSMUST00000047510 3213 ntAPPRIS P3 TSL 1 (best) BASIC12.05□□□□□ -0.48
Smc1aQ9CU62 Sema3b-203ENSMUST00000102530 3410 ntAPPRIS P1 TSL 5 BASIC12.05□□□□□ -0.48
Smc1aQ9CU62 Colca2-201ENSMUST00000114427 1263 ntAPPRIS P1 TSL 3 BASIC12.05□□□□□ -0.48
Smc1aQ9CU62 Cetn2-203ENSMUST00000114551 1286 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Smc1aQ9CU62 Clps-202ENSMUST00000114785 369 ntTSL 2 BASIC12.05□□□□□ -0.48
Smc1aQ9CU62 Gm14071-201ENSMUST00000117817 509 ntBASIC12.05□□□□□ -0.48
Smc1aQ9CU62 Gm15036-201ENSMUST00000118880 400 ntBASIC12.05□□□□□ -0.48
Smc1aQ9CU62 Rpl10-ps1-201ENSMUST00000119438 645 ntBASIC12.05□□□□□ -0.48
Smc1aQ9CU62 Gm12791-201ENSMUST00000120788 655 ntBASIC12.05□□□□□ -0.48
Smc1aQ9CU62 Gm25545-201ENSMUST00000122673 323 ntBASIC12.05□□□□□ -0.48
Smc1aQ9CU62 Gm11884-201ENSMUST00000131639 641 ntTSL 5 BASIC12.05□□□□□ -0.48
Smc1aQ9CU62 Gm23694-201ENSMUST00000179335 110 ntBASIC12.05□□□□□ -0.48
Smc1aQ9CU62 Mir7051-201ENSMUST00000184167 73 ntBASIC12.05□□□□□ -0.48
Smc1aQ9CU62 Gm28529-201ENSMUST00000186159 387 ntTSL 3 BASIC12.05□□□□□ -0.48
Smc1aQ9CU62 Gm8197-202ENSMUST00000193422 934 ntBASIC12.05□□□□□ -0.48
Smc1aQ9CU62 Fkbp6-204ENSMUST00000201791 1297 ntAPPRIS ALT2 TSL 1 (best) BASIC12.05□□□□□ -0.48
Smc1aQ9CU62 4930543N07Rik-202ENSMUST00000209503 1117 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
Smc1aQ9CU62 Gm3433-201ENSMUST00000210149 1058 ntBASIC12.05□□□□□ -0.48
Smc1aQ9CU62 Gm7183-201ENSMUST00000213870 1005 ntBASIC12.05□□□□□ -0.48
Smc1aQ9CU62 AC156568.1-201ENSMUST00000223018 712 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
Smc1aQ9CU62 AC140375.1-201ENSMUST00000225421 694 ntBASIC12.05□□□□□ -0.48
Smc1aQ9CU62 Prss3-201ENSMUST00000096003 822 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Smc1aQ9CU62 Olfr1230-201ENSMUST00000099787 918 ntAPPRIS P1 BASIC12.05□□□□□ -0.48
Smc1aQ9CU62 Cd2bp2-203ENSMUST00000205316 2912 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Retrieved 100 of 76,532 protein–RNA pairs in 90 ms