Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Gm6423-201ENSMUST00000204315 934 ntBASIC11.51□□□□□ -0.57
Upf3bQ3ULL6 Gm18035-201ENSMUST00000211962 589 ntBASIC11.51□□□□□ -0.57
Upf3bQ3ULL6 Gm3028-201ENSMUST00000213805 1119 ntBASIC11.51□□□□□ -0.57
Upf3bQ3ULL6 Rp9-204ENSMUST00000216973 796 ntAPPRIS ALT2 TSL 3 BASIC11.51□□□□□ -0.57
Upf3bQ3ULL6 Gm34868-201ENSMUST00000218341 530 ntTSL 3 BASIC11.51□□□□□ -0.57
Upf3bQ3ULL6 AC125070.1-201ENSMUST00000223523 555 ntTSL 5 BASIC11.51□□□□□ -0.57
Upf3bQ3ULL6 Lxn-201ENSMUST00000058981 1112 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Upf3bQ3ULL6 Gm6040-201ENSMUST00000095430 857 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Upf3bQ3ULL6 Zcchc4-201ENSMUST00000031077 5743 ntAPPRIS P3 TSL 1 (best) BASIC11.51□□□□□ -0.57
Upf3bQ3ULL6 Immt-205ENSMUST00000166938 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC11.51□□□□□ -0.57
Upf3bQ3ULL6 Brcc3-203ENSMUST00000118428 2093 ntAPPRIS ALT2 TSL 5 BASIC11.51□□□□□ -0.57
Upf3bQ3ULL6 Ddx11-201ENSMUST00000163605 4149 ntAPPRIS P2 TSL 5 BASIC11.51□□□□□ -0.57
Upf3bQ3ULL6 Atp6v0e2-201ENSMUST00000040361 1789 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Upf3bQ3ULL6 Ablim2-204ENSMUST00000114204 2953 ntAPPRIS ALT2 TSL 5 BASIC11.51□□□□□ -0.57
Upf3bQ3ULL6 Spesp1-201ENSMUST00000056949 3042 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Upf3bQ3ULL6 Spns3-201ENSMUST00000021154 1804 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
Upf3bQ3ULL6 Tasp1-203ENSMUST00000110079 2258 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Upf3bQ3ULL6 Dyrk4-202ENSMUST00000078521 2252 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Upf3bQ3ULL6 4930512J16Rik-201ENSMUST00000203704 1859 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
Upf3bQ3ULL6 9530059O14Rik-201ENSMUST00000181107 3978 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
Upf3bQ3ULL6 Nop14-201ENSMUST00000041364 2702 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Upf3bQ3ULL6 Gapdhs-203ENSMUST00000182634 1457 ntAPPRIS ALT2 TSL 1 (best) BASIC11.51□□□□□ -0.57
Upf3bQ3ULL6 Nf2-202ENSMUST00000056290 2394 ntAPPRIS ALT1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Upf3bQ3ULL6 Cyp2d41-ps-201ENSMUST00000180453 1503 ntBASIC11.5□□□□□ -0.57
Upf3bQ3ULL6 Rpl4-201ENSMUST00000034966 1538 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Upf3bQ3ULL6 Serpinb6a-203ENSMUST00000076532 1504 ntAPPRIS P1 TSL 5 BASIC11.5□□□□□ -0.57
Upf3bQ3ULL6 Zfp366-201ENSMUST00000056558 6382 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Upf3bQ3ULL6 Hmg20a-206ENSMUST00000217518 2468 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
Upf3bQ3ULL6 Gm5124-202ENSMUST00000132683 2083 ntBASIC11.5□□□□□ -0.57
Upf3bQ3ULL6 C130083M11Rik-201ENSMUST00000197171 2072 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
Upf3bQ3ULL6 Gm44740-201ENSMUST00000205603 1614 ntBASIC11.5□□□□□ -0.57
Upf3bQ3ULL6 Gpr37-202ENSMUST00000200812 3035 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
Upf3bQ3ULL6 Axin2-202ENSMUST00000106711 2551 ntAPPRIS ALT2 TSL 5 BASIC11.5□□□□□ -0.57
Upf3bQ3ULL6 D630029K05Rik-201ENSMUST00000033651 2133 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
Upf3bQ3ULL6 Ccdc130-202ENSMUST00000098578 2119 ntAPPRIS P3 TSL 1 (best) BASIC11.5□□□□□ -0.57
Upf3bQ3ULL6 Tsc2-201ENSMUST00000097373 6018 ntAPPRIS P2 TSL 1 (best) BASIC11.5□□□□□ -0.57
Upf3bQ3ULL6 Cdadc1-208ENSMUST00000225839 3189 ntAPPRIS ALT2 BASIC11.5□□□□□ -0.57
Upf3bQ3ULL6 Pcdhga1-201ENSMUST00000194190 4692 ntAPPRIS P2 TSL 1 (best) BASIC11.5□□□□□ -0.57
Upf3bQ3ULL6 Gab3-202ENSMUST00000114104 1705 ntAPPRIS ALT2 TSL 5 BASIC11.5□□□□□ -0.57
Upf3bQ3ULL6 Polq-202ENSMUST00000071452 7290 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
Upf3bQ3ULL6 AC153524.2-202ENSMUST00000220401 1794 ntBASIC11.5□□□□□ -0.57
Upf3bQ3ULL6 Pced1b-204ENSMUST00000228521 1790 ntAPPRIS P1 BASIC11.5□□□□□ -0.57
Upf3bQ3ULL6 Gm13351-201ENSMUST00000118087 414 ntBASIC11.5□□□□□ -0.57
Upf3bQ3ULL6 Tnfrsf14-201ENSMUST00000123514 1018 ntAPPRIS P2 TSL 1 (best) BASIC11.5□□□□□ -0.57
Upf3bQ3ULL6 Myl3-202ENSMUST00000124267 575 ntAPPRIS ALT2 TSL 5 BASIC11.5□□□□□ -0.57
Upf3bQ3ULL6 Tmem190-201ENSMUST00000013235 589 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Upf3bQ3ULL6 Aamdc-207ENSMUST00000138060 467 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
Upf3bQ3ULL6 Aamdc-209ENSMUST00000144858 380 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
Upf3bQ3ULL6 Gm37988-201ENSMUST00000155020 825 ntAPPRIS P1 TSL 5 BASIC11.5□□□□□ -0.57
Upf3bQ3ULL6 Mocs2-203ENSMUST00000164737 745 ntTSL 3 BASIC11.5□□□□□ -0.57
Upf3bQ3ULL6 Gm7719-201ENSMUST00000182374 975 ntBASIC11.5□□□□□ -0.57
Upf3bQ3ULL6 D5Ertd615e-203ENSMUST00000198493 1032 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
Upf3bQ3ULL6 Gm15469-201ENSMUST00000201750 961 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
Upf3bQ3ULL6 Btg4-203ENSMUST00000213680 1282 ntAPPRIS P2 TSL 1 (best) BASIC11.5□□□□□ -0.57
Upf3bQ3ULL6 Gm26670-202ENSMUST00000226862 340 ntBASIC11.5□□□□□ -0.57
Upf3bQ3ULL6 4930449E01Rik-201ENSMUST00000022711 595 ntTSL 2 BASIC11.5□□□□□ -0.57
Upf3bQ3ULL6 Cib4-201ENSMUST00000065486 769 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Upf3bQ3ULL6 Olfr700-201ENSMUST00000079936 951 ntAPPRIS P1 BASIC11.5□□□□□ -0.57
Upf3bQ3ULL6 Dcpp2-201ENSMUST00000088598 611 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Upf3bQ3ULL6 Tle3-202ENSMUST00000159050 2304 ntTSL 5 BASIC11.5□□□□□ -0.57
Upf3bQ3ULL6 Gm37697-201ENSMUST00000195680 1844 ntBASIC11.5□□□□□ -0.57
Upf3bQ3ULL6 Fam90a1b-201ENSMUST00000044989 2939 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Upf3bQ3ULL6 Palm2-201ENSMUST00000102904 2958 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Upf3bQ3ULL6 Dclk1-204ENSMUST00000196745 7962 ntAPPRIS ALT2 TSL 1 (best) BASIC11.5□□□□□ -0.57
Upf3bQ3ULL6 Dock6-207ENSMUST00000217336 6880 ntAPPRIS P2 TSL 5 BASIC11.5□□□□□ -0.57
Upf3bQ3ULL6 Apon-201ENSMUST00000060782 1397 ntAPPRIS P1 TSL 2 BASIC11.5□□□□□ -0.57
Upf3bQ3ULL6 Nectin4-201ENSMUST00000006578 3636 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Upf3bQ3ULL6 Myh13-203ENSMUST00000180845 5991 ntAPPRIS P1 TSL 5 BASIC11.5□□□□□ -0.57
Upf3bQ3ULL6 Thsd4-206ENSMUST00000171654 8522 ntAPPRIS P1 TSL 5 BASIC11.5□□□□□ -0.57
Upf3bQ3ULL6 Asap1-202ENSMUST00000110114 4409 ntAPPRIS ALT2 TSL 5 BASIC11.5□□□□□ -0.57
Upf3bQ3ULL6 Ppp2r2cos-201ENSMUST00000152862 1491 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
Upf3bQ3ULL6 Atxn1l-202ENSMUST00000212605 7439 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Upf3bQ3ULL6 AC154171.2-201ENSMUST00000225219 2652 ntBASIC11.5□□□□□ -0.57
Upf3bQ3ULL6 Lrp2bp-201ENSMUST00000066451 1525 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
Upf3bQ3ULL6 Avpr2-202ENSMUST00000101470 2787 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
Upf3bQ3ULL6 Madd-213ENSMUST00000111376 5927 ntAPPRIS ALT2 TSL 5 BASIC11.5□□□□□ -0.57
Upf3bQ3ULL6 Madd-206ENSMUST00000099725 5905 ntAPPRIS ALT2 TSL 5 BASIC11.5□□□□□ -0.57
Upf3bQ3ULL6 9230105E05Rik-201ENSMUST00000161291 2250 ntTSL 1 (best) BASIC11.49□□□□□ -0.57
Upf3bQ3ULL6 Tnpo3-201ENSMUST00000012679 4251 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
Upf3bQ3ULL6 Dzip1l-203ENSMUST00000112885 4350 ntAPPRIS P3 TSL 1 (best) BASIC11.49□□□□□ -0.57
Upf3bQ3ULL6 Abcf3-201ENSMUST00000003319 3090 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
Upf3bQ3ULL6 Gm12498-201ENSMUST00000138374 2458 ntTSL 1 (best) BASIC11.49□□□□□ -0.57
Upf3bQ3ULL6 Chmp1b-202ENSMUST00000210564 2490 ntAPPRIS P1 BASIC11.49□□□□□ -0.57
Upf3bQ3ULL6 Mcf2l-222ENSMUST00000173099 6081 ntTSL 5 BASIC11.49□□□□□ -0.57
Upf3bQ3ULL6 Robo1-201ENSMUST00000023600 7563 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
Upf3bQ3ULL6 Ptbp3-201ENSMUST00000030076 6855 ntAPPRIS ALT2 TSL 1 (best) BASIC11.49□□□□□ -0.57
Upf3bQ3ULL6 Arhgap24-203ENSMUST00000094559 3346 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
Upf3bQ3ULL6 AA474408-201ENSMUST00000098110 3339 ntBASIC11.49□□□□□ -0.57
Upf3bQ3ULL6 Col6a6-203ENSMUST00000166431 7098 ntAPPRIS ALT2 TSL 5 BASIC11.49□□□□□ -0.57
Upf3bQ3ULL6 Pex13-201ENSMUST00000020523 4146 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
Upf3bQ3ULL6 Arhgap25-201ENSMUST00000071024 2635 ntTSL 1 (best) BASIC11.49□□□□□ -0.57
Upf3bQ3ULL6 1700017B05Rik-201ENSMUST00000034846 4152 ntAPPRIS P2 TSL 1 (best) BASIC11.49□□□□□ -0.57
Upf3bQ3ULL6 Gm13652-201ENSMUST00000143898 3412 ntTSL 1 (best) BASIC11.49□□□□□ -0.57
Upf3bQ3ULL6 Cdip1-202ENSMUST00000117713 1964 ntTSL 1 (best) BASIC11.49□□□□□ -0.57
Upf3bQ3ULL6 Kat7-205ENSMUST00000107734 3560 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
Upf3bQ3ULL6 Myh1-203ENSMUST00000124516 6081 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
Upf3bQ3ULL6 Spata5-201ENSMUST00000029277 2890 ntAPPRIS P3 TSL 1 (best) BASIC11.49□□□□□ -0.57
Upf3bQ3ULL6 Ccdc85a-206ENSMUST00000146385 3798 ntAPPRIS ALT2 TSL 5 BASIC11.49□□□□□ -0.57
Upf3bQ3ULL6 4930412O13Rik-202ENSMUST00000114919 558 ntAPPRIS ALT2 TSL 2 BASIC11.49□□□□□ -0.57
Upf3bQ3ULL6 Impa1-202ENSMUST00000118410 2988 ntTSL 1 (best) BASIC11.49□□□□□ -0.57
Retrieved 100 of 76,532 protein–RNA pairs in 59.2 ms