Protein–RNA interactions for Protein: P39428

Traf1, TNF receptor-associated factor 1, mousemouse

Predictions only

Length 409 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Traf1P39428 Gm22109-201ENSMUST00000177995 119 ntBASIC12.5□□□□□ -0.41
Traf1P39428 Gm22291-201ENSMUST00000178027 119 ntBASIC12.5□□□□□ -0.41
Traf1P39428 n-R5s141-201ENSMUST00000178066 119 ntBASIC12.5□□□□□ -0.41
Traf1P39428 Gm23284-201ENSMUST00000178069 119 ntBASIC12.5□□□□□ -0.41
Traf1P39428 n-R5s100-201ENSMUST00000178106 119 ntBASIC12.5□□□□□ -0.41
Traf1P39428 n-R5s111-201ENSMUST00000178203 119 ntBASIC12.5□□□□□ -0.41
Traf1P39428 Gm13275-201ENSMUST00000178347 549 ntAPPRIS P1 BASIC12.5□□□□□ -0.41
Traf1P39428 Gm13277-201ENSMUST00000178480 549 ntAPPRIS P1 BASIC12.5□□□□□ -0.41
Traf1P39428 n-R5s105-201ENSMUST00000178499 119 ntBASIC12.5□□□□□ -0.41
Traf1P39428 n-R5s149-201ENSMUST00000178520 119 ntBASIC12.5□□□□□ -0.41
Traf1P39428 Gm13279-201ENSMUST00000178602 549 ntAPPRIS P1 BASIC12.5□□□□□ -0.41
Traf1P39428 n-R5s103-201ENSMUST00000178755 119 ntBASIC12.5□□□□□ -0.41
Traf1P39428 n-R5s123-201ENSMUST00000178804 119 ntBASIC12.5□□□□□ -0.41
Traf1P39428 n-R5s142-201ENSMUST00000178820 119 ntBASIC12.5□□□□□ -0.41
Traf1P39428 n-R5s144-201ENSMUST00000178859 119 ntBASIC12.5□□□□□ -0.41
Traf1P39428 n-R5s139-201ENSMUST00000178975 119 ntBASIC12.5□□□□□ -0.41
Traf1P39428 n-R5s134-201ENSMUST00000178983 119 ntBASIC12.5□□□□□ -0.41
Traf1P39428 n-R5s136-201ENSMUST00000179080 119 ntBASIC12.5□□□□□ -0.41
Traf1P39428 Gm25018-201ENSMUST00000179081 119 ntBASIC12.5□□□□□ -0.41
Traf1P39428 n-R5s104-201ENSMUST00000179107 119 ntBASIC12.5□□□□□ -0.41
Traf1P39428 n-R5s113-201ENSMUST00000179143 119 ntBASIC12.5□□□□□ -0.41
Traf1P39428 Gm13289-201ENSMUST00000179158 549 ntAPPRIS P1 BASIC12.5□□□□□ -0.41
Traf1P39428 n-R5s133-201ENSMUST00000179275 119 ntBASIC12.5□□□□□ -0.41
Traf1P39428 Gm13276-201ENSMUST00000179372 549 ntAPPRIS P1 BASIC12.5□□□□□ -0.41
Traf1P39428 n-R5s117-201ENSMUST00000179431 119 ntBASIC12.5□□□□□ -0.41
Traf1P39428 Gm25212-201ENSMUST00000179432 119 ntBASIC12.5□□□□□ -0.41
Traf1P39428 n-R5s138-201ENSMUST00000179476 119 ntBASIC12.5□□□□□ -0.41
Traf1P39428 Gm13287-201ENSMUST00000179490 549 ntAPPRIS P1 BASIC12.5□□□□□ -0.41
Traf1P39428 n-R5s122-201ENSMUST00000179500 119 ntBASIC12.5□□□□□ -0.41
Traf1P39428 n-R5s143-201ENSMUST00000179542 119 ntBASIC12.5□□□□□ -0.41
Traf1P39428 n-R5s107-201ENSMUST00000179704 119 ntBASIC12.5□□□□□ -0.41
Traf1P39428 Gm26391-201ENSMUST00000179843 119 ntBASIC12.5□□□□□ -0.41
Traf1P39428 n-R5s110-201ENSMUST00000179995 119 ntBASIC12.5□□□□□ -0.41
Traf1P39428 n-R5s128-201ENSMUST00000180096 119 ntBASIC12.5□□□□□ -0.41
Traf1P39428 n-R5s124-201ENSMUST00000180334 119 ntBASIC12.5□□□□□ -0.41
Traf1P39428 Plac9a-203ENSMUST00000183725 439 ntTSL 3 BASIC12.5□□□□□ -0.41
Traf1P39428 Plac9b-202ENSMUST00000183811 396 ntTSL 3 BASIC12.5□□□□□ -0.41
Traf1P39428 Gm27440-201ENSMUST00000184785 107 ntBASIC12.5□□□□□ -0.41
Traf1P39428 Gm7902-201ENSMUST00000198842 947 ntBASIC12.5□□□□□ -0.41
Traf1P39428 Cdk5-203ENSMUST00000198990 783 ntTSL 5 BASIC12.5□□□□□ -0.41
Traf1P39428 Znhit6-206ENSMUST00000199033 1127 ntAPPRIS ALT2 TSL 1 (best) BASIC12.5□□□□□ -0.41
Traf1P39428 Gm7939-201ENSMUST00000201233 1050 ntBASIC12.5□□□□□ -0.41
Traf1P39428 BC080696-201ENSMUST00000202858 1218 ntBASIC12.5□□□□□ -0.41
Traf1P39428 Gm44605-201ENSMUST00000206892 949 ntBASIC12.5□□□□□ -0.41
Traf1P39428 Tpi-rs4-201ENSMUST00000213734 720 ntBASIC12.5□□□□□ -0.41
Traf1P39428 AC163703.1-201ENSMUST00000214133 339 ntAPPRIS P1 TSL 2 BASIC12.5□□□□□ -0.41
Traf1P39428 AC174797.2-201ENSMUST00000225835 165 ntBASIC12.5□□□□□ -0.41
Traf1P39428 Nsmce2-203ENSMUST00000227173 1122 ntBASIC12.5□□□□□ -0.41
Traf1P39428 Fam3b-201ENSMUST00000049721 853 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Traf1P39428 Spata3-201ENSMUST00000052854 1107 ntAPPRIS ALT2 TSL 1 (best) BASIC12.5□□□□□ -0.41
Traf1P39428 Gm24089-201ENSMUST00000093696 109 ntBASIC12.5□□□□□ -0.41
Traf1P39428 Olfr553-201ENSMUST00000098222 981 ntAPPRIS P1 BASIC12.5□□□□□ -0.41
Traf1P39428 Scn10a-201ENSMUST00000084787 6416 ntAPPRIS P2 TSL 5 BASIC12.5□□□□□ -0.41
Traf1P39428 Gm19951-201ENSMUST00000222616 1328 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
Traf1P39428 Bpifb4-201ENSMUST00000099181 1479 ntAPPRIS ALT2 TSL 1 (best) BASIC12.5□□□□□ -0.41
Traf1P39428 Pck2-207ENSMUST00000226519 4625 ntAPPRIS P1 BASIC12.5□□□□□ -0.41
Traf1P39428 Gm8684-201ENSMUST00000195078 1564 ntBASIC12.5□□□□□ -0.41
Traf1P39428 Gm45165-201ENSMUST00000207763 1631 ntBASIC12.5□□□□□ -0.41
Traf1P39428 Gm6793-201ENSMUST00000071732 1604 ntAPPRIS P1 BASIC12.5□□□□□ -0.41
Traf1P39428 Tmod2-201ENSMUST00000064433 9884 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Traf1P39428 Tcn2-207ENSMUST00000109993 2027 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Traf1P39428 Ufd1-202ENSMUST00000115578 2078 ntAPPRIS P1 TSL 5 BASIC12.5□□□□□ -0.41
Traf1P39428 Gm37954-201ENSMUST00000195400 2071 ntBASIC12.5□□□□□ -0.41
Traf1P39428 Dcun1d2-206ENSMUST00000203604 2112 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
Traf1P39428 Prr16-201ENSMUST00000116639 2224 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Traf1P39428 Lrrc55-201ENSMUST00000099930 2217 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Traf1P39428 Magee2-201ENSMUST00000033575 2316 ntAPPRIS P1 BASIC12.5□□□□□ -0.41
Traf1P39428 Gm15674-201ENSMUST00000143266 2438 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
Traf1P39428 Zfp420-202ENSMUST00000074876 2537 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Traf1P39428 Ckap2-201ENSMUST00000046916 2593 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Traf1P39428 Pla2g6-203ENSMUST00000172403 2943 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
Traf1P39428 Pigq-219ENSMUST00000208071 2926 ntAPPRIS ALT2 TSL 5 BASIC12.5□□□□□ -0.41
Traf1P39428 Slc43a1-204ENSMUST00000121114 3089 ntAPPRIS ALT2 TSL 1 (best) BASIC12.5□□□□□ -0.41
Traf1P39428 Tlr12-201ENSMUST00000074829 3177 ntAPPRIS P1 BASIC12.5□□□□□ -0.41
Traf1P39428 Pdzd7-203ENSMUST00000169459 3903 ntAPPRIS P1 TSL 5 BASIC12.5□□□□□ -0.41
Traf1P39428 C330027C09Rik-202ENSMUST00000117994 3977 ntTSL 5 BASIC12.5□□□□□ -0.41
Traf1P39428 Plpbp-205ENSMUST00000209856 3954 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
Traf1P39428 Ddx54-201ENSMUST00000031598 4322 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Traf1P39428 Timeless-201ENSMUST00000055539 4457 ntAPPRIS P3 TSL 1 (best) BASIC12.5□□□□□ -0.41
Traf1P39428 Cacna1c-224ENSMUST00000219018 7516 ntTSL 5 BASIC12.49□□□□□ -0.41
Traf1P39428 Madd-207ENSMUST00000111369 5582 ntAPPRIS ALT2 TSL 5 BASIC12.49□□□□□ -0.41
Traf1P39428 Magel2-201ENSMUST00000080403 4631 ntAPPRIS P1 BASIC12.49□□□□□ -0.41
Traf1P39428 Furin-202ENSMUST00000120753 4332 ntAPPRIS P1 TSL 5 BASIC12.49□□□□□ -0.41
Traf1P39428 Jak3-202ENSMUST00000110012 3774 ntAPPRIS P1 TSL 5 BASIC12.49□□□□□ -0.41
Traf1P39428 Gpcpd1-202ENSMUST00000060955 3686 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Traf1P39428 Nr4a2-201ENSMUST00000028166 3568 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Traf1P39428 Ctcfl-202ENSMUST00000179693 3174 ntAPPRIS P1 TSL 5 BASIC12.49□□□□□ -0.41
Traf1P39428 Foxd2os-201ENSMUST00000123272 2908 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
Traf1P39428 Mtch2-202ENSMUST00000111467 2281 ntTSL 5 BASIC12.49□□□□□ -0.41
Traf1P39428 Elmod3-201ENSMUST00000070990 2122 ntAPPRIS P2 TSL 1 (best) BASIC12.49□□□□□ -0.41
Traf1P39428 Olfr624-201ENSMUST00000062144 5731 ntAPPRIS P1 BASIC12.49□□□□□ -0.41
Traf1P39428 Cfap53-201ENSMUST00000114895 1888 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Traf1P39428 2700068H02Rik-201ENSMUST00000137882 1872 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
Traf1P39428 Tex45-201ENSMUST00000047265 1613 ntAPPRIS P1 TSL 5 BASIC12.49□□□□□ -0.41
Traf1P39428 Abi2-207ENSMUST00000188618 4723 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
Traf1P39428 Serpinb6a-203ENSMUST00000076532 1504 ntAPPRIS P1 TSL 5 BASIC12.49□□□□□ -0.41
Traf1P39428 Eef1akmt4-202ENSMUST00000119224 1464 ntTSL 2 BASIC12.49□□□□□ -0.41
Traf1P39428 CT030159.3-201ENSMUST00000222936 1481 ntTSL 5 BASIC12.49□□□□□ -0.41
Traf1P39428 Arrb2-201ENSMUST00000079056 1443 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
Traf1P39428 Ankrd7-202ENSMUST00000115396 1157 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
Retrieved 100 of 76,532 protein–RNA pairs in 65.6 ms