Protein–RNA interactions for Protein: P35123

Usp4, Ubiquitin carboxyl-terminal hydrolase 4, mousemouse

Predictions only

Length 962 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp4P35123 Gm45124-201ENSMUST00000206723 2755 ntBASIC11.27□□□□□ -0.61
Usp4P35123 Gm9220-201ENSMUST00000190721 2544 ntBASIC11.27□□□□□ -0.61
Usp4P35123 AC117648.1-201ENSMUST00000219777 2510 ntBASIC11.27□□□□□ -0.61
Usp4P35123 Ltc4s-201ENSMUST00000101265 480 ntTSL 1 (best) BASIC11.27□□□□□ -0.61
Usp4P35123 Sfxn5-204ENSMUST00000113788 514 ntTSL 1 (best) BASIC11.27□□□□□ -0.61
Usp4P35123 Gm15528-201ENSMUST00000117821 864 ntBASIC11.27□□□□□ -0.61
Usp4P35123 Gm11836-201ENSMUST00000121022 441 ntBASIC11.27□□□□□ -0.61
Usp4P35123 Gm4879-201ENSMUST00000122190 1272 ntBASIC11.27□□□□□ -0.61
Usp4P35123 Plgrkt-209ENSMUST00000152936 604 ntTSL 1 (best) BASIC11.27□□□□□ -0.61
Usp4P35123 Spdye4a-202ENSMUST00000160502 1245 ntTSL 1 (best) BASIC11.27□□□□□ -0.61
Usp4P35123 Siglech-205ENSMUST00000165045 1062 ntAPPRIS ALT2 TSL 1 (best) BASIC11.27□□□□□ -0.61
Usp4P35123 Gm18159-201ENSMUST00000174516 1070 ntBASIC11.27□□□□□ -0.61
Usp4P35123 Mir8115-201ENSMUST00000184992 119 ntBASIC11.27□□□□□ -0.61
Usp4P35123 Cdipt-202ENSMUST00000205830 805 ntTSL 2 BASIC11.27□□□□□ -0.61
Usp4P35123 6430531B16Rik-204ENSMUST00000209335 898 ntAPPRIS ALT2 TSL 1 (best) BASIC11.27□□□□□ -0.61
Usp4P35123 Gm6145-204ENSMUST00000210902 1266 ntTSL 5 BASIC11.27□□□□□ -0.61
Usp4P35123 Cinp-204ENSMUST00000221102 536 ntTSL 2 BASIC11.27□□□□□ -0.61
Usp4P35123 CT573047.1-201ENSMUST00000223652 851 ntBASIC11.27□□□□□ -0.61
Usp4P35123 Gm10775-201ENSMUST00000099425 1203 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Usp4P35123 Atp6v0a4-202ENSMUST00000114908 3307 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Usp4P35123 Gpm6b-206ENSMUST00000112228 3083 ntTSL 1 (best) BASIC11.27□□□□□ -0.61
Usp4P35123 Zfp775-203ENSMUST00000204095 4143 ntAPPRIS P1 TSL 2 BASIC11.27□□□□□ -0.61
Usp4P35123 Lig3-212ENSMUST00000173727 3636 ntAPPRIS ALT2 TSL 1 (best) BASIC11.27□□□□□ -0.61
Usp4P35123 2810454H06Rik-201ENSMUST00000189942 3148 ntBASIC11.27□□□□□ -0.61
Usp4P35123 Cad-204ENSMUST00000201182 6529 ntTSL 1 (best) BASIC11.27□□□□□ -0.61
Usp4P35123 Zfp672-201ENSMUST00000057836 2862 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Usp4P35123 Camk2b-207ENSMUST00000101586 1590 ntTSL 5 BASIC11.27□□□□□ -0.61
Usp4P35123 Agpat3-204ENSMUST00000105389 3678 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Usp4P35123 Itih3-205ENSMUST00000227995 2100 ntAPPRIS ALT2 BASIC11.27□□□□□ -0.61
Usp4P35123 Maml3-202ENSMUST00000121440 8288 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Usp4P35123 Cyp7b1-201ENSMUST00000035625 2166 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Usp4P35123 Sult1a1-201ENSMUST00000106371 1370 ntTSL 1 (best) BASIC11.27□□□□□ -0.61
Usp4P35123 Sult1a1-202ENSMUST00000106372 1369 ntTSL 1 (best) BASIC11.27□□□□□ -0.61
Usp4P35123 Gm6903-201ENSMUST00000160509 1366 ntBASIC11.27□□□□□ -0.61
Usp4P35123 Lgals4-201ENSMUST00000066723 1384 ntAPPRIS P2 TSL 1 (best) BASIC11.27□□□□□ -0.61
Usp4P35123 Arhgap19-204ENSMUST00000177495 1652 ntTSL 1 (best) BASIC11.27□□□□□ -0.61
Usp4P35123 Prf1-201ENSMUST00000035419 1968 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Usp4P35123 B3galt5-201ENSMUST00000099497 5147 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Usp4P35123 Atxn1l-202ENSMUST00000212605 7439 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Usp4P35123 Pax6-207ENSMUST00000111087 2559 ntAPPRIS ALT1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Usp4P35123 Gm5739-201ENSMUST00000208601 1703 ntBASIC11.26□□□□□ -0.61
Usp4P35123 Siglec1-203ENSMUST00000110227 5790 ntAPPRIS ALT2 TSL 1 (best) BASIC11.26□□□□□ -0.61
Usp4P35123 Triobp-204ENSMUST00000109690 7023 ntAPPRIS P4 TSL 1 (best) BASIC11.26□□□□□ -0.61
Usp4P35123 B4galt4-204ENSMUST00000114711 1481 ntTSL 1 (best) BASIC11.26□□□□□ -0.61
Usp4P35123 Ccdc136-202ENSMUST00000115275 3279 ntAPPRIS ALT2 TSL 5 BASIC11.26□□□□□ -0.61
Usp4P35123 Nrap-204ENSMUST00000166203 5079 ntAPPRIS ALT2 TSL 5 BASIC11.26□□□□□ -0.61
Usp4P35123 Pcnt-201ENSMUST00000001179 9331 ntAPPRIS P2 TSL 2 BASIC11.26□□□□□ -0.61
Usp4P35123 4933425M03Rik-201ENSMUST00000195991 1544 ntBASIC11.26□□□□□ -0.61
Usp4P35123 Ankrd31-203ENSMUST00000208758 5859 ntTSL 5 BASIC11.26□□□□□ -0.61
Usp4P35123 Scnn1b-201ENSMUST00000033161 2478 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Usp4P35123 Rnft2-201ENSMUST00000117177 4381 ntAPPRIS P3 TSL 1 (best) BASIC11.26□□□□□ -0.61
Usp4P35123 AC122293.1-201ENSMUST00000218333 2231 ntTSL 1 (best) BASIC11.26□□□□□ -0.61
Usp4P35123 Gm25880-201ENSMUST00000104331 132 ntBASIC11.26□□□□□ -0.61
Usp4P35123 Trpm2-201ENSMUST00000105399 731 ntTSL 1 (best) BASIC11.26□□□□□ -0.61
Usp4P35123 Rmdn1-202ENSMUST00000108253 806 ntAPPRIS ALT2 TSL 1 (best) BASIC11.26□□□□□ -0.61
Usp4P35123 Gm11457-203ENSMUST00000146846 676 ntTSL 3 BASIC11.26□□□□□ -0.61
Usp4P35123 Gm13830-203ENSMUST00000148916 247 ntTSL 1 (best) BASIC11.26□□□□□ -0.61
Usp4P35123 Gzmc-201ENSMUST00000015585 894 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Usp4P35123 Gm17135-201ENSMUST00000167009 564 ntTSL 3 BASIC11.26□□□□□ -0.61
Usp4P35123 Agtpbp1-219ENSMUST00000170378 653 ntTSL 3 BASIC11.26□□□□□ -0.61
Usp4P35123 Isl1-202ENSMUST00000176044 1198 ntTSL 1 (best) BASIC11.26□□□□□ -0.61
Usp4P35123 Gm20714-202ENSMUST00000176436 748 ntTSL 1 (best) BASIC11.26□□□□□ -0.61
Usp4P35123 Gm23694-201ENSMUST00000179335 110 ntBASIC11.26□□□□□ -0.61
Usp4P35123 Ly6c1-202ENSMUST00000179762 838 ntAPPRIS P3 TSL 1 (best) BASIC11.26□□□□□ -0.61
Usp4P35123 Gm19091-201ENSMUST00000208120 978 ntBASIC11.26□□□□□ -0.61
Usp4P35123 1110019B22Rik-202ENSMUST00000218396 989 ntTSL 5 BASIC11.26□□□□□ -0.61
Usp4P35123 Scg5-201ENSMUST00000024005 1208 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Usp4P35123 Rpl3l-201ENSMUST00000045186 1033 ntTSL 1 (best) BASIC11.26□□□□□ -0.61
Usp4P35123 Fpr-rs3-201ENSMUST00000071189 1032 ntAPPRIS P1 BASIC11.26□□□□□ -0.61
Usp4P35123 Cenpu-202ENSMUST00000093518 783 ntTSL 1 (best) BASIC11.26□□□□□ -0.61
Usp4P35123 Tardbp-210ENSMUST00000172073 6513 ntTSL 5 BASIC11.26□□□□□ -0.61
Usp4P35123 Gfra2-203ENSMUST00000227697 1323 ntBASIC11.26□□□□□ -0.61
Usp4P35123 Gm45867-201ENSMUST00000208201 2317 ntBASIC11.26□□□□□ -0.61
Usp4P35123 Wnt5a-202ENSMUST00000112272 3650 ntTSL 1 (best) BASIC11.26□□□□□ -0.61
Usp4P35123 Ncapd3-205ENSMUST00000216677 5149 ntAPPRIS P2 TSL 1 (best) BASIC11.26□□□□□ -0.61
Usp4P35123 Pcdh10-202ENSMUST00000170695 8234 ntAPPRIS P3 TSL 1 (best) BASIC11.26□□□□□ -0.61
Usp4P35123 Pstpip2-201ENSMUST00000114741 1395 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Usp4P35123 Usp11-201ENSMUST00000033383 3467 ntAPPRIS P1 TSL 2 BASIC11.26□□□□□ -0.61
Usp4P35123 Olfr222-202ENSMUST00000214351 2474 ntAPPRIS P1 TSL 5 BASIC11.26□□□□□ -0.61
Usp4P35123 Enpp7-202ENSMUST00000106273 1408 ntAPPRIS ALT2 TSL 5 BASIC11.26□□□□□ -0.61
Usp4P35123 Gpr155-204ENSMUST00000112044 4201 ntAPPRIS ALT2 TSL 5 BASIC11.25□□□□□ -0.61
Usp4P35123 Fbln2-202ENSMUST00000113498 4644 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
Usp4P35123 Slc6a9-202ENSMUST00000063857 3146 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Usp4P35123 Slc7a3-202ENSMUST00000101362 2371 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Usp4P35123 3000002C10Rik-201ENSMUST00000125451 1614 ntTSL 2 BASIC11.25□□□□□ -0.61
Usp4P35123 Nudt13-203ENSMUST00000223663 1633 ntAPPRIS P1 BASIC11.25□□□□□ -0.61
Usp4P35123 Plekha7-207ENSMUST00000182511 4502 ntTSL 2 BASIC11.25□□□□□ -0.61
Usp4P35123 Gm42571-201ENSMUST00000201197 2464 ntBASIC11.25□□□□□ -0.61
Usp4P35123 Taok1-202ENSMUST00000058496 12409 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Usp4P35123 Rnh1-201ENSMUST00000106033 2091 ntAPPRIS P3 TSL 1 (best) BASIC11.25□□□□□ -0.61
Usp4P35123 Gm26013-201ENSMUST00000104404 119 ntBASIC11.25□□□□□ -0.61
Usp4P35123 0610010K14Rik-206ENSMUST00000108576 576 ntAPPRIS ALT1 TSL 2 BASIC11.25□□□□□ -0.61
Usp4P35123 Akr1b10-202ENSMUST00000115051 1022 ntTSL 5 BASIC11.25□□□□□ -0.61
Usp4P35123 Gm12337-201ENSMUST00000119634 400 ntBASIC11.25□□□□□ -0.61
Usp4P35123 Csf1-204ENSMUST00000120654 821 ntTSL 3 BASIC11.25□□□□□ -0.61
Usp4P35123 Gm13328-201ENSMUST00000120816 1020 ntBASIC11.25□□□□□ -0.61
Usp4P35123 Vps25-205ENSMUST00000121331 790 ntTSL 2 BASIC11.25□□□□□ -0.61
Usp4P35123 Gm11675-201ENSMUST00000121873 832 ntBASIC11.25□□□□□ -0.61
Usp4P35123 Nop56-204ENSMUST00000136621 868 ntTSL 5 BASIC11.25□□□□□ -0.61
Usp4P35123 Gm14236-201ENSMUST00000142374 872 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
Retrieved 100 of 76,532 protein–RNA pairs in 70.1 ms