Protein–RNA interactions for Protein: Q9CU62

Smc1a, Structural maintenance of chromosomes protein 1A, mousemouse

Known RBP Predictions only

Length 1,233 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smc1aQ9CU62 Kcnip3-203ENSMUST00000103215 2732 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
Smc1aQ9CU62 Kcnip3-201ENSMUST00000028850 2728 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
Smc1aQ9CU62 Papss1-205ENSMUST00000199878 2648 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
Smc1aQ9CU62 Clp1-201ENSMUST00000028475 1912 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Smc1aQ9CU62 Arhgap25-201ENSMUST00000071024 2635 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
Smc1aQ9CU62 Zdhhc3-208ENSMUST00000147563 6987 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Smc1aQ9CU62 AC107453.4-201ENSMUST00000227068 1817 ntBASIC12.09□□□□□ -0.47
Smc1aQ9CU62 2610301B20Rik-202ENSMUST00000101504 2053 ntAPPRIS ALT2 TSL 5 BASIC12.09□□□□□ -0.47
Smc1aQ9CU62 Gripap1-203ENSMUST00000115675 3015 ntAPPRIS ALT2 TSL 1 (best) BASIC12.09□□□□□ -0.47
Smc1aQ9CU62 E330034L11Rik-201ENSMUST00000200640 1742 ntBASIC12.09□□□□□ -0.47
Smc1aQ9CU62 Pop1-202ENSMUST00000079028 3275 ntAPPRIS ALT2 TSL 1 (best) BASIC12.09□□□□□ -0.47
Smc1aQ9CU62 Nxf2-202ENSMUST00000113187 2316 ntAPPRIS ALT2 TSL 1 (best) BASIC12.09□□□□□ -0.47
Smc1aQ9CU62 Gm13347-201ENSMUST00000120298 1353 ntBASIC12.09□□□□□ -0.47
Smc1aQ9CU62 Kdm3a-202ENSMUST00000167220 4853 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Smc1aQ9CU62 1700017B05Rik-201ENSMUST00000034846 4152 ntAPPRIS P2 TSL 1 (best) BASIC12.09□□□□□ -0.47
Smc1aQ9CU62 Ss18-202ENSMUST00000040964 4153 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
Smc1aQ9CU62 Slc25a51-201ENSMUST00000107796 4433 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
Smc1aQ9CU62 Xlr4c-204ENSMUST00000114531 1104 ntAPPRIS P1 TSL 2 BASIC12.09□□□□□ -0.47
Smc1aQ9CU62 Gm12194-201ENSMUST00000117756 1012 ntBASIC12.09□□□□□ -0.47
Smc1aQ9CU62 Gm15329-201ENSMUST00000121408 155 ntBASIC12.09□□□□□ -0.47
Smc1aQ9CU62 1700063K16Rik-201ENSMUST00000190306 369 ntBASIC12.09□□□□□ -0.47
Smc1aQ9CU62 Gm37284-201ENSMUST00000193607 539 ntBASIC12.09□□□□□ -0.47
Smc1aQ9CU62 Gm37638-201ENSMUST00000194337 1123 ntBASIC12.09□□□□□ -0.47
Smc1aQ9CU62 Gm7902-201ENSMUST00000198842 947 ntBASIC12.09□□□□□ -0.47
Smc1aQ9CU62 Gm43671-201ENSMUST00000200422 433 ntBASIC12.09□□□□□ -0.47
Smc1aQ9CU62 Gm44647-201ENSMUST00000207402 428 ntBASIC12.09□□□□□ -0.47
Smc1aQ9CU62 Gm39288-201ENSMUST00000210554 446 ntBASIC12.09□□□□□ -0.47
Smc1aQ9CU62 Dydc2-201ENSMUST00000022316 818 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Smc1aQ9CU62 4930449E01Rik-201ENSMUST00000022711 595 ntTSL 2 BASIC12.09□□□□□ -0.47
Smc1aQ9CU62 Myf6-201ENSMUST00000044210 1263 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Smc1aQ9CU62 Lxn-201ENSMUST00000058981 1112 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Smc1aQ9CU62 4930555K19Rik-201ENSMUST00000060066 171 ntBASIC12.09□□□□□ -0.47
Smc1aQ9CU62 Olfr1490-202ENSMUST00000213900 5165 ntAPPRIS ALT2 TSL 5 BASIC12.09□□□□□ -0.47
Smc1aQ9CU62 Pdlim2-201ENSMUST00000022681 1523 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Smc1aQ9CU62 Brat1-203ENSMUST00000110806 3854 ntAPPRIS ALT2 TSL 1 (best) BASIC12.09□□□□□ -0.47
Smc1aQ9CU62 Cnr2-202ENSMUST00000097843 3867 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Smc1aQ9CU62 Myo5a-206ENSMUST00000136731 6480 ntAPPRIS ALT1 TSL 5 BASIC12.09□□□□□ -0.47
Smc1aQ9CU62 Tram2-201ENSMUST00000037998 6492 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Smc1aQ9CU62 Gm46355-201ENSMUST00000221434 1671 ntTSL 5 BASIC12.09□□□□□ -0.47
Smc1aQ9CU62 Uimc1-204ENSMUST00000127195 2936 ntAPPRIS ALT2 TSL 5 BASIC12.09□□□□□ -0.47
Smc1aQ9CU62 Dip2a-205ENSMUST00000160048 6551 ntAPPRIS ALT2 TSL 5 BASIC12.09□□□□□ -0.47
Smc1aQ9CU62 Msrb3-201ENSMUST00000092143 3843 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Smc1aQ9CU62 Zc3hc1-201ENSMUST00000080812 1824 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Smc1aQ9CU62 Rpap1-201ENSMUST00000048493 4744 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Smc1aQ9CU62 Thbd-201ENSMUST00000099270 3723 ntAPPRIS P1 BASIC12.09□□□□□ -0.47
Smc1aQ9CU62 Scn5a-203ENSMUST00000120420 7536 ntAPPRIS ALT1 TSL 5 BASIC12.09□□□□□ -0.47
Smc1aQ9CU62 Cyp26b1-205ENSMUST00000205228 4288 ntTSL 1 (best) BASIC12.08□□□□□ -0.47
Smc1aQ9CU62 Ptp4a3-203ENSMUST00000165541 3539 ntAPPRIS P1 TSL 5 BASIC12.08□□□□□ -0.47
Smc1aQ9CU62 Elovl5-201ENSMUST00000034904 2782 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Smc1aQ9CU62 A130077B15Rik-201ENSMUST00000219429 2547 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
Smc1aQ9CU62 Zfp827-203ENSMUST00000119254 4549 ntAPPRIS ALT2 TSL 1 (best) BASIC12.08□□□□□ -0.48
Smc1aQ9CU62 Pygl-201ENSMUST00000071250 2825 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Smc1aQ9CU62 Slc9a3-204ENSMUST00000225423 2589 ntAPPRIS ALT2 BASIC12.08□□□□□ -0.48
Smc1aQ9CU62 C1qtnf3-201ENSMUST00000022853 2338 ntAPPRIS P3 TSL 1 (best) BASIC12.08□□□□□ -0.48
Smc1aQ9CU62 Habp2-201ENSMUST00000078284 2314 ntAPPRIS ALT2 TSL 5 BASIC12.08□□□□□ -0.48
Smc1aQ9CU62 4930517G19Rik-201ENSMUST00000206152 1676 ntBASIC12.08□□□□□ -0.48
Smc1aQ9CU62 Ostm1-202ENSMUST00000105497 770 ntTSL 2 BASIC12.08□□□□□ -0.48
Smc1aQ9CU62 Gm11500-201ENSMUST00000118237 601 ntBASIC12.08□□□□□ -0.48
Smc1aQ9CU62 Gm11457-203ENSMUST00000146846 676 ntTSL 3 BASIC12.08□□□□□ -0.48
Smc1aQ9CU62 Gm25492-201ENSMUST00000157383 129 ntBASIC12.08□□□□□ -0.48
Smc1aQ9CU62 Gm20471-201ENSMUST00000172793 626 ntTSL 3 BASIC12.08□□□□□ -0.48
Smc1aQ9CU62 Gm17709-201ENSMUST00000174536 1096 ntBASIC12.08□□□□□ -0.48
Smc1aQ9CU62 Gm4895-201ENSMUST00000181646 1137 ntBASIC12.08□□□□□ -0.48
Smc1aQ9CU62 Gm26982-201ENSMUST00000182250 1151 ntBASIC12.08□□□□□ -0.48
Smc1aQ9CU62 2700099C18Rik-202ENSMUST00000182402 1275 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
Smc1aQ9CU62 Gm19587-201ENSMUST00000191395 545 ntBASIC12.08□□□□□ -0.48
Smc1aQ9CU62 Gm44552-201ENSMUST00000205458 1247 ntBASIC12.08□□□□□ -0.48
Smc1aQ9CU62 Hcst-203ENSMUST00000208740 366 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
Smc1aQ9CU62 Bcap31-201ENSMUST00000002091 1219 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Smc1aQ9CU62 Gm35657-201ENSMUST00000215869 989 ntTSL 5 BASIC12.08□□□□□ -0.48
Smc1aQ9CU62 AC153152.3-201ENSMUST00000222188 1135 ntBASIC12.08□□□□□ -0.48
Smc1aQ9CU62 CT573086.4-201ENSMUST00000226729 342 ntBASIC12.08□□□□□ -0.48
Smc1aQ9CU62 Crygb-201ENSMUST00000027090 634 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Smc1aQ9CU62 3100002H09Rik-201ENSMUST00000053604 873 ntAPPRIS P1 BASIC12.08□□□□□ -0.48
Smc1aQ9CU62 Ifi27-201ENSMUST00000066701 889 ntAPPRIS P4 TSL 1 (best) BASIC12.08□□□□□ -0.48
Smc1aQ9CU62 Golm1-201ENSMUST00000022039 3954 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Smc1aQ9CU62 Gm13561-201ENSMUST00000136879 1826 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
Smc1aQ9CU62 C4b-201ENSMUST00000069507 5379 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Smc1aQ9CU62 Nelfcd-201ENSMUST00000016397 2280 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
Smc1aQ9CU62 Vtn-201ENSMUST00000017488 1744 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Smc1aQ9CU62 Slc45a4-207ENSMUST00000151288 7509 ntAPPRIS P2 TSL 1 (best) BASIC12.08□□□□□ -0.48
Smc1aQ9CU62 Gm10417-201ENSMUST00000194341 3522 ntBASIC12.08□□□□□ -0.48
Smc1aQ9CU62 Smad9-201ENSMUST00000029371 5368 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Smc1aQ9CU62 Atp9b-201ENSMUST00000091790 5357 ntAPPRIS ALT2 TSL 5 BASIC12.08□□□□□ -0.48
Smc1aQ9CU62 Cinp-201ENSMUST00000043716 2029 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Smc1aQ9CU62 Gal3st2b-202ENSMUST00000178757 2722 ntAPPRIS P2 TSL 1 (best) BASIC12.08□□□□□ -0.48
Smc1aQ9CU62 Ltbp1-203ENSMUST00000112516 5140 ntAPPRIS P3 TSL 5 BASIC12.08□□□□□ -0.48
Smc1aQ9CU62 Cntd1-201ENSMUST00000103107 2335 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Smc1aQ9CU62 Zfyve1-201ENSMUST00000048319 4036 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Smc1aQ9CU62 Pml-202ENSMUST00000114136 4343 ntAPPRIS ALT2 TSL 1 (best) BASIC12.07□□□□□ -0.48
Smc1aQ9CU62 Hyou1-206ENSMUST00000161318 4489 ntAPPRIS P1 TSL 5 BASIC12.07□□□□□ -0.48
Smc1aQ9CU62 Gm45140-202ENSMUST00000204419 5061 ntAPPRIS P5 TSL 5 BASIC12.07□□□□□ -0.48
Smc1aQ9CU62 Mical2-202ENSMUST00000050149 6669 ntAPPRIS P3 TSL 1 (best) BASIC12.07□□□□□ -0.48
Smc1aQ9CU62 Llgl1-202ENSMUST00000108719 4268 ntAPPRIS ALT2 TSL 1 (best) BASIC12.07□□□□□ -0.48
Smc1aQ9CU62 Gm10750-201ENSMUST00000099266 1506 ntAPPRIS P1 BASIC12.07□□□□□ -0.48
Smc1aQ9CU62 Gm15883-201ENSMUST00000153562 1690 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
Smc1aQ9CU62 Gm45218-201ENSMUST00000205533 1678 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
Smc1aQ9CU62 Gabarapl2-201ENSMUST00000034428 1677 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Smc1aQ9CU62 Atg9a-205ENSMUST00000188347 4041 ntAPPRIS P1 TSL 5 BASIC12.07□□□□□ -0.48
Smc1aQ9CU62 Azin1-203ENSMUST00000110329 4217 ntAPPRIS P1 TSL 2 BASIC12.07□□□□□ -0.48
Retrieved 100 of 76,532 protein–RNA pairs in 70.2 ms