Protein–RNA interactions for Protein: Q9Z0G9

Cldn3, Claudin-3, mousemouse

Predictions only

Length 219 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cldn3Q9Z0G9 1700105P06Rik-201ENSMUST00000186160 1772 ntBASIC20.24■□□□□ 0.83
Cldn3Q9Z0G9 Clip1-205ENSMUST00000111566 6133 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
Cldn3Q9Z0G9 Rnf44-208ENSMUST00000128257 1689 ntTSL 5 BASIC20.24■□□□□ 0.83
Cldn3Q9Z0G9 Tcte2-209ENSMUST00000143162 1221 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
Cldn3Q9Z0G9 Trak1-208ENSMUST00000210636 2197 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
Cldn3Q9Z0G9 Rhoq-201ENSMUST00000024956 4151 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Cldn3Q9Z0G9 5031439G07Rik-203ENSMUST00000165743 5032 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
Cldn3Q9Z0G9 Ier3ip1-201ENSMUST00000026487 1395 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Cldn3Q9Z0G9 AA543186-201ENSMUST00000180841 1696 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
Cldn3Q9Z0G9 3110082J24Rik-202ENSMUST00000199573 767 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Cldn3Q9Z0G9 Hebp2-202ENSMUST00000213153 968 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
Cldn3Q9Z0G9 Bcl2l10-201ENSMUST00000034709 1220 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Cldn3Q9Z0G9 Olig1-201ENSMUST00000056882 2162 ntAPPRIS P1 BASIC20.23■□□□□ 0.83
Cldn3Q9Z0G9 Gm9817-201ENSMUST00000054395 2531 ntAPPRIS P1 BASIC20.23■□□□□ 0.83
Cldn3Q9Z0G9 Fam49b-202ENSMUST00000164532 1770 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Cldn3Q9Z0G9 Gpr62-201ENSMUST00000164834 1977 ntAPPRIS P1 BASIC20.23■□□□□ 0.83
Cldn3Q9Z0G9 Ccnd3-201ENSMUST00000037333 1999 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Cldn3Q9Z0G9 Trim33-202ENSMUST00000106860 5025 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
Cldn3Q9Z0G9 Set-201ENSMUST00000067996 2834 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
Cldn3Q9Z0G9 Slc35a2-209ENSMUST00000208397 1374 ntAPPRIS ALT2 TSL 5 BASIC20.22■□□□□ 0.83
Cldn3Q9Z0G9 Cdkl3-202ENSMUST00000063321 2008 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
Cldn3Q9Z0G9 Socs2-201ENSMUST00000020215 2222 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Cldn3Q9Z0G9 Fam91a1-201ENSMUST00000037270 5560 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Cldn3Q9Z0G9 Gm8770-201ENSMUST00000121113 1109 ntBASIC20.22■□□□□ 0.83
Cldn3Q9Z0G9 Gm43759-201ENSMUST00000196925 1261 ntBASIC20.22■□□□□ 0.83
Cldn3Q9Z0G9 Acsl3-203ENSMUST00000134566 2492 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Cldn3Q9Z0G9 Crlf3-203ENSMUST00000103233 2230 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Cldn3Q9Z0G9 Rxrb-201ENSMUST00000044858 2623 ntAPPRIS P4 TSL 1 (best) BASIC20.21■□□□□ 0.83
Cldn3Q9Z0G9 Wnt11-205ENSMUST00000167303 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Cldn3Q9Z0G9 Magi3-201ENSMUST00000064371 6640 ntAPPRIS P3 TSL 1 (best) BASIC20.21■□□□□ 0.83
Cldn3Q9Z0G9 Tmem191c-213ENSMUST00000164950 1394 ntAPPRIS P1 TSL 3 BASIC20.21■□□□□ 0.83
Cldn3Q9Z0G9 Sh3bp1-204ENSMUST00000109698 1923 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
Cldn3Q9Z0G9 Spr-203ENSMUST00000174769 1029 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
Cldn3Q9Z0G9 Mir6236-201ENSMUST00000184437 123 ntBASIC20.2■□□□□ 0.82
Cldn3Q9Z0G9 Rnf187-202ENSMUST00000217262 711 ntAPPRIS P2 TSL 1 (best) BASIC20.2■□□□□ 0.82
Cldn3Q9Z0G9 Gm13241-201ENSMUST00000094493 780 ntBASIC20.2■□□□□ 0.82
Cldn3Q9Z0G9 Lmo2-208ENSMUST00000170926 1529 ntAPPRIS P1 TSL 2 BASIC20.2■□□□□ 0.82
Cldn3Q9Z0G9 Htra2-202ENSMUST00000113962 1305 ntTSL 5 BASIC20.2■□□□□ 0.82
Cldn3Q9Z0G9 Lgr4-201ENSMUST00000046548 5060 ntAPPRIS P1 TSL 2 BASIC20.2■□□□□ 0.82
Cldn3Q9Z0G9 AC152827.1-201ENSMUST00000221143 2189 ntBASIC20.19■□□□□ 0.82
Cldn3Q9Z0G9 Ankrd33b-203ENSMUST00000110410 2070 ntAPPRIS P3 TSL 1 (best) BASIC20.19■□□□□ 0.82
Cldn3Q9Z0G9 Zfp3-201ENSMUST00000060444 2061 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Cldn3Q9Z0G9 Ercc6l2-208ENSMUST00000144763 1820 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Cldn3Q9Z0G9 Pfdn4-204ENSMUST00000109148 736 ntTSL 3 BASIC20.19■□□□□ 0.82
Cldn3Q9Z0G9 Gltpd2-201ENSMUST00000057685 1216 ntAPPRIS P2 TSL 1 (best) BASIC20.19■□□□□ 0.82
Cldn3Q9Z0G9 Nipsnap2-201ENSMUST00000086046 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Cldn3Q9Z0G9 Rem2-202ENSMUST00000164766 1884 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Cldn3Q9Z0G9 3830408C21Rik-205ENSMUST00000225426 1898 ntBASIC20.19■□□□□ 0.82
Cldn3Q9Z0G9 Gnb2-201ENSMUST00000031726 1860 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Cldn3Q9Z0G9 Trp73os-201ENSMUST00000143429 2192 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Cldn3Q9Z0G9 Trim3-203ENSMUST00000106791 2466 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Cldn3Q9Z0G9 Cdc20-201ENSMUST00000006565 1793 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Cldn3Q9Z0G9 Map2k1-201ENSMUST00000005066 2436 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Cldn3Q9Z0G9 Hipk1-201ENSMUST00000029438 4185 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Cldn3Q9Z0G9 Acot3-203ENSMUST00000223080 1545 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
Cldn3Q9Z0G9 Fam19a5-201ENSMUST00000068088 2575 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Cldn3Q9Z0G9 D630002J18Rik-201ENSMUST00000181854 1115 ntBASIC20.18■□□□□ 0.82
Cldn3Q9Z0G9 Tusc2-203ENSMUST00000193418 410 ntTSL 3 BASIC20.18■□□□□ 0.82
Cldn3Q9Z0G9 Foxo3-202ENSMUST00000105501 1316 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
Cldn3Q9Z0G9 Aif1l-201ENSMUST00000001920 3117 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Cldn3Q9Z0G9 Zbtb4-203ENSMUST00000108640 4067 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Cldn3Q9Z0G9 Tusc3-203ENSMUST00000209440 1535 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Cldn3Q9Z0G9 Bhlhe23-201ENSMUST00000108878 2520 ntAPPRIS P1 BASIC20.17■□□□□ 0.82
Cldn3Q9Z0G9 Pold2-201ENSMUST00000102922 1646 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Cldn3Q9Z0G9 Wtap-204ENSMUST00000159986 3187 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
Cldn3Q9Z0G9 Rbm38-201ENSMUST00000029014 1768 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Cldn3Q9Z0G9 Gm9207-201ENSMUST00000198773 1115 ntBASIC20.17■□□□□ 0.82
Cldn3Q9Z0G9 6330562C20Rik-201ENSMUST00000098867 784 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
Cldn3Q9Z0G9 Nr0b1-201ENSMUST00000026036 1808 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Cldn3Q9Z0G9 Hsf1-205ENSMUST00000227478 2084 ntAPPRIS P1 BASIC20.17■□□□□ 0.82
Cldn3Q9Z0G9 Inpp5a-203ENSMUST00000106098 2826 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Cldn3Q9Z0G9 Elf2-212ENSMUST00000194641 5919 ntAPPRIS P3 TSL 5 BASIC20.16■□□□□ 0.82
Cldn3Q9Z0G9 Siglec15-201ENSMUST00000170760 1156 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Cldn3Q9Z0G9 1110065P20Rik-206ENSMUST00000185036 1223 ntTSL 2 BASIC20.16■□□□□ 0.82
Cldn3Q9Z0G9 Kiss1-205ENSMUST00000195286 656 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Cldn3Q9Z0G9 Slc26a10-201ENSMUST00000095270 2215 ntAPPRIS P2 TSL 5 BASIC20.15■□□□□ 0.82
Cldn3Q9Z0G9 Nphp1-202ENSMUST00000110357 2296 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
Cldn3Q9Z0G9 Dpf1-201ENSMUST00000049977 2309 ntAPPRIS P2 TSL 1 (best) BASIC20.15■□□□□ 0.82
Cldn3Q9Z0G9 Wrnip1-201ENSMUST00000021832 2633 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Cldn3Q9Z0G9 Dynlt1f-201ENSMUST00000179554 807 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Cldn3Q9Z0G9 Dleu2-203ENSMUST00000182259 1437 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
Cldn3Q9Z0G9 Map3k21-201ENSMUST00000034316 5693 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
Cldn3Q9Z0G9 Cav2-201ENSMUST00000000058 2733 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
Cldn3Q9Z0G9 Sephs2-201ENSMUST00000082428 2177 ntAPPRIS P1 BASIC20.14■□□□□ 0.81
Cldn3Q9Z0G9 D830036C21Rik-202ENSMUST00000208263 1548 ntBASIC20.14■□□□□ 0.81
Cldn3Q9Z0G9 Psme4-201ENSMUST00000041231 6491 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Cldn3Q9Z0G9 Naa20-202ENSMUST00000110000 1142 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Cldn3Q9Z0G9 Serbp1-212ENSMUST00000204294 717 ntTSL 5 BASIC20.14■□□□□ 0.81
Cldn3Q9Z0G9 Hccs-202ENSMUST00000112115 2473 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Cldn3Q9Z0G9 Kmt2b-202ENSMUST00000108154 8454 ntAPPRIS P2 TSL 1 (best) BASIC20.14■□□□□ 0.81
Cldn3Q9Z0G9 Sema6d-204ENSMUST00000078621 6372 ntTSL 5 BASIC20.13■□□□□ 0.81
Cldn3Q9Z0G9 Chst12-201ENSMUST00000043050 2331 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Cldn3Q9Z0G9 Nab2-202ENSMUST00000099157 2311 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
Cldn3Q9Z0G9 Gm43034-201ENSMUST00000198678 1364 ntBASIC20.13■□□□□ 0.81
Cldn3Q9Z0G9 Gm37035-201ENSMUST00000194809 2148 ntBASIC20.13■□□□□ 0.81
Cldn3Q9Z0G9 Cacna2d2-201ENSMUST00000010210 5783 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
Cldn3Q9Z0G9 Shisa5-202ENSMUST00000112059 1910 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
Cldn3Q9Z0G9 Gpr137-204ENSMUST00000099782 1742 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
Cldn3Q9Z0G9 Sept5-201ENSMUST00000096987 2127 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Cldn3Q9Z0G9 Cdkl3-210ENSMUST00000121591 2387 ntAPPRIS ALT2 TSL 1 (best) BASIC20.12■□□□□ 0.81
Retrieved 100 of 76,532 protein–RNA pairs in 20.8 ms