Protein–RNA interactions for Protein: Q9JJV9

Scn5a, Sodium channel protein type 5 subunit alpha, mousemouse

Predictions only

Length 2,019 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn5aQ9JJV9 Gnb5-206ENSMUST00000215875 2105 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Scn5aQ9JJV9 Arhgap9-204ENSMUST00000219511 2217 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
Scn5aQ9JJV9 Rhou-201ENSMUST00000045487 3371 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Scn5aQ9JJV9 Mapk1-201ENSMUST00000023462 2390 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Scn5aQ9JJV9 Lmo1-201ENSMUST00000036992 1282 ntAPPRIS P3 TSL 1 (best) BASIC20.98■□□□□ 0.95
Scn5aQ9JJV9 Gm13234-201ENSMUST00000120010 747 ntBASIC20.97■□□□□ 0.95
Scn5aQ9JJV9 Specc1-215ENSMUST00000202744 674 ntTSL 3 BASIC20.97■□□□□ 0.95
Scn5aQ9JJV9 Tmem53-201ENSMUST00000062824 991 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Scn5aQ9JJV9 Gas2l1-202ENSMUST00000056649 2847 ntAPPRIS P3 TSL 5 BASIC20.97■□□□□ 0.95
Scn5aQ9JJV9 Cacybp-201ENSMUST00000014370 2098 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Scn5aQ9JJV9 Trim3-203ENSMUST00000106791 2466 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
Scn5aQ9JJV9 Carm1-203ENSMUST00000115395 3152 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
Scn5aQ9JJV9 Ccr10-201ENSMUST00000062759 1726 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Scn5aQ9JJV9 Prmt1-205ENSMUST00000207659 945 ntTSL 5 BASIC20.96■□□□□ 0.95
Scn5aQ9JJV9 Gucd1-211ENSMUST00000219774 806 ntTSL 3 BASIC20.96■□□□□ 0.95
Scn5aQ9JJV9 Prmt1-201ENSMUST00000045325 1071 ntTSL 5 BASIC20.96■□□□□ 0.95
Scn5aQ9JJV9 Txnl4a-204ENSMUST00000145963 1756 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Scn5aQ9JJV9 Zfp639-202ENSMUST00000191783 1988 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Scn5aQ9JJV9 Ugdh-201ENSMUST00000031103 2550 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Scn5aQ9JJV9 Smim1-209ENSMUST00000145527 562 ntAPPRIS P1 TSL 2 BASIC20.95■□□□□ 0.94
Scn5aQ9JJV9 Sds-201ENSMUST00000066540 1207 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Scn5aQ9JJV9 Rnaseh2b-201ENSMUST00000022499 1494 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Scn5aQ9JJV9 Nsfl1c-202ENSMUST00000089140 1486 ntAPPRIS P3 TSL 5 BASIC20.95■□□□□ 0.94
Scn5aQ9JJV9 Aurkaip1-203ENSMUST00000105592 1029 ntAPPRIS P1 TSL 2 BASIC20.95■□□□□ 0.94
Scn5aQ9JJV9 P4hb-203ENSMUST00000168360 770 ntTSL 3 BASIC20.95■□□□□ 0.94
Scn5aQ9JJV9 Spcs1-201ENSMUST00000186131 1005 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
Scn5aQ9JJV9 Cnnm3-202ENSMUST00000097776 5292 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
Scn5aQ9JJV9 Celf6-202ENSMUST00000118164 1583 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
Scn5aQ9JJV9 Gm44949-201ENSMUST00000206423 1450 ntBASIC20.94■□□□□ 0.94
Scn5aQ9JJV9 D830036C21Rik-201ENSMUST00000207444 453 ntTSL 3 BASIC20.94■□□□□ 0.94
Scn5aQ9JJV9 Spaca1-201ENSMUST00000029927 1197 ntAPPRIS P3 TSL 1 (best) BASIC20.94■□□□□ 0.94
Scn5aQ9JJV9 H2-Ab1-201ENSMUST00000040828 1211 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Scn5aQ9JJV9 Spaca1-202ENSMUST00000084734 1149 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
Scn5aQ9JJV9 Hnrnpab-203ENSMUST00000109103 1437 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
Scn5aQ9JJV9 Tmem203-201ENSMUST00000104998 854 ntAPPRIS P1 BASIC20.94■□□□□ 0.94
Scn5aQ9JJV9 AI507597-201ENSMUST00000140726 880 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
Scn5aQ9JJV9 Lsm2-201ENSMUST00000007266 873 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
Scn5aQ9JJV9 Arhgdia-202ENSMUST00000106197 1867 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Scn5aQ9JJV9 Zcrb1-208ENSMUST00000162160 850 ntAPPRIS ALT1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Scn5aQ9JJV9 Krtcap3-205ENSMUST00000201625 902 ntAPPRIS P1 TSL 5 BASIC20.93■□□□□ 0.94
Scn5aQ9JJV9 Gm4881-201ENSMUST00000206705 1152 ntAPPRIS P1 TSL 5 BASIC20.93■□□□□ 0.94
Scn5aQ9JJV9 Zfand3-202ENSMUST00000226208 923 ntAPPRIS P1 BASIC20.93■□□□□ 0.94
Scn5aQ9JJV9 Tmprss5-205ENSMUST00000170246 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
Scn5aQ9JJV9 Msto1-201ENSMUST00000107494 2093 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
Scn5aQ9JJV9 Tusc3-203ENSMUST00000209440 1535 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Scn5aQ9JJV9 Mindy2-202ENSMUST00000213380 2521 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
Scn5aQ9JJV9 Gm12933-201ENSMUST00000120203 872 ntBASIC20.92■□□□□ 0.94
Scn5aQ9JJV9 Prmt1-210ENSMUST00000208829 621 ntTSL 5 BASIC20.92■□□□□ 0.94
Scn5aQ9JJV9 AC137127.1-201ENSMUST00000213466 1078 ntBASIC20.92■□□□□ 0.94
Scn5aQ9JJV9 E130116L18Rik-201ENSMUST00000066954 306 ntAPPRIS P1 BASIC20.92■□□□□ 0.94
Scn5aQ9JJV9 Vkorc1l1-202ENSMUST00000073945 650 ntTSL 2 BASIC20.92■□□□□ 0.94
Scn5aQ9JJV9 D030056L22Rik-201ENSMUST00000055792 1631 ntAPPRIS P2 TSL 1 (best) BASIC20.92■□□□□ 0.94
Scn5aQ9JJV9 Hpca-201ENSMUST00000030572 1525 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Scn5aQ9JJV9 Stk32c-201ENSMUST00000016125 2206 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Scn5aQ9JJV9 Gm26507-201ENSMUST00000181838 1410 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
Scn5aQ9JJV9 S100a6-201ENSMUST00000001051 731 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Scn5aQ9JJV9 A730056A06Rik-202ENSMUST00000206959 526 ntTSL 3 BASIC20.92■□□□□ 0.94
Scn5aQ9JJV9 0610010K14Rik-202ENSMUST00000021181 779 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
Scn5aQ9JJV9 Lgals7-201ENSMUST00000081457 754 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Scn5aQ9JJV9 Bcl3-201ENSMUST00000120537 1850 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Scn5aQ9JJV9 Lsm12-201ENSMUST00000021297 2256 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Scn5aQ9JJV9 Alx3-201ENSMUST00000014747 1874 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Scn5aQ9JJV9 Sp3os-201ENSMUST00000123087 583 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
Scn5aQ9JJV9 Snhg20-202ENSMUST00000149822 593 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
Scn5aQ9JJV9 Cyyr1-204ENSMUST00000175700 1294 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
Scn5aQ9JJV9 C230062I16Rik-202ENSMUST00000207746 1022 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
Scn5aQ9JJV9 Ddah2-201ENSMUST00000007255 1342 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Scn5aQ9JJV9 Rrad-201ENSMUST00000034351 1577 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Scn5aQ9JJV9 Nfkbid-203ENSMUST00000108176 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
Scn5aQ9JJV9 Pgbd5-204ENSMUST00000140012 3222 ntAPPRIS ALT2 TSL 5 BASIC20.9■□□□□ 0.94
Scn5aQ9JJV9 Ccdc9-201ENSMUST00000041010 2379 ntAPPRIS P3 TSL 1 (best) BASIC20.9■□□□□ 0.94
Scn5aQ9JJV9 Tmem54-203ENSMUST00000106064 1066 ntAPPRIS P3 TSL 1 (best) BASIC20.9■□□□□ 0.94
Scn5aQ9JJV9 Mettl26-205ENSMUST00000169308 1026 ntTSL 2 BASIC20.9■□□□□ 0.94
Scn5aQ9JJV9 Mir6236-201ENSMUST00000184437 123 ntBASIC20.9■□□□□ 0.94
Scn5aQ9JJV9 Gm26766-202ENSMUST00000227544 2347 ntBASIC20.9■□□□□ 0.94
Scn5aQ9JJV9 Zdhhc4-201ENSMUST00000001900 1364 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Scn5aQ9JJV9 Stum-202ENSMUST00000179826 601 ntAPPRIS ALT1 TSL 5 BASIC20.89■□□□□ 0.93
Scn5aQ9JJV9 Gm44732-201ENSMUST00000208055 635 ntTSL 3 BASIC20.89■□□□□ 0.93
Scn5aQ9JJV9 Stac3-201ENSMUST00000035839 1790 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Scn5aQ9JJV9 Rbm39-202ENSMUST00000109584 667 ntTSL 5 BASIC20.88■□□□□ 0.93
Scn5aQ9JJV9 Theg-202ENSMUST00000077433 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
Scn5aQ9JJV9 Moap1-201ENSMUST00000173760 1312 ntAPPRIS P1 TSL 2 BASIC20.88■□□□□ 0.93
Scn5aQ9JJV9 Barhl1-203ENSMUST00000113849 2102 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Scn5aQ9JJV9 AA543186-201ENSMUST00000180841 1696 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
Scn5aQ9JJV9 Hhex-201ENSMUST00000025944 1802 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Scn5aQ9JJV9 Prpsap2-201ENSMUST00000004955 1837 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Scn5aQ9JJV9 Shisa5-202ENSMUST00000112059 1910 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
Scn5aQ9JJV9 Cep78-201ENSMUST00000047704 2548 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Scn5aQ9JJV9 Hmgn2-204ENSMUST00000105893 973 ntTSL 3 BASIC20.88■□□□□ 0.93
Scn5aQ9JJV9 1700017B05Rik-204ENSMUST00000215298 1023 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
Scn5aQ9JJV9 Cotl1-202ENSMUST00000168698 1520 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Scn5aQ9JJV9 Snapin-203ENSMUST00000149884 1928 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Scn5aQ9JJV9 Ankrd54-201ENSMUST00000040676 1904 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Scn5aQ9JJV9 Cox7c-202ENSMUST00000078764 433 ntTSL 2 BASIC20.87■□□□□ 0.93
Scn5aQ9JJV9 Cdkn1c-201ENSMUST00000037287 1901 ntAPPRIS P3 TSL 1 (best) BASIC20.87■□□□□ 0.93
Scn5aQ9JJV9 Ankrd33b-202ENSMUST00000076942 1641 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
Scn5aQ9JJV9 Rab6b-202ENSMUST00000189134 716 ntTSL 3 BASIC20.87■□□□□ 0.93
Scn5aQ9JJV9 Gm45894-201ENSMUST00000211940 651 ntTSL 2 BASIC20.87■□□□□ 0.93
Scn5aQ9JJV9 Fbxo6-202ENSMUST00000056965 1163 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Scn5aQ9JJV9 4430402I18Rik-201ENSMUST00000025872 2152 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
Retrieved 100 of 76,532 protein–RNA pairs in 15.7 ms