Protein–RNA interactions for Protein: Q9DC48

Cdc40, Pre-mRNA-processing factor 17, mousemouse

Known RBP Predictions only

Length 579 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdc40Q9DC48 Notum-203ENSMUST00000106178 2012 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
Cdc40Q9DC48 Twist2-201ENSMUST00000007949 1329 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Cdc40Q9DC48 Nkpd1-203ENSMUST00000214205 2309 ntAPPRIS ALT2 TSL 5 BASIC18.51■□□□□ 0.55
Cdc40Q9DC48 Npr3-205ENSMUST00000228603 2437 ntAPPRIS ALT2 BASIC18.51■□□□□ 0.55
Cdc40Q9DC48 Ovol2-201ENSMUST00000037423 1539 ntAPPRIS P4 TSL 1 (best) BASIC18.51■□□□□ 0.55
Cdc40Q9DC48 Naa20-202ENSMUST00000110000 1142 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Cdc40Q9DC48 Hsd17b3-202ENSMUST00000166224 1286 ntAPPRIS P1 TSL 2 BASIC18.51■□□□□ 0.55
Cdc40Q9DC48 Gm21964-202ENSMUST00000213641 1649 ntAPPRIS ALT2 TSL 5 BASIC18.51■□□□□ 0.55
Cdc40Q9DC48 Snap91-203ENSMUST00000074501 2577 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
Cdc40Q9DC48 Uqcrfs1-201ENSMUST00000042834 1363 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Cdc40Q9DC48 Rhoq-201ENSMUST00000024956 4151 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Cdc40Q9DC48 Mrpl38-201ENSMUST00000106439 1411 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Cdc40Q9DC48 Scube1-202ENSMUST00000043634 5161 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
Cdc40Q9DC48 4930539J05Rik-202ENSMUST00000182865 511 ntTSL 2 BASIC18.5■□□□□ 0.55
Cdc40Q9DC48 Gp1bb-201ENSMUST00000051160 645 ntAPPRIS P3 BASIC18.5■□□□□ 0.55
Cdc40Q9DC48 Slc30a4-201ENSMUST00000005952 5458 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Cdc40Q9DC48 Ccnjl-201ENSMUST00000050574 2672 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Cdc40Q9DC48 Tmem260-209ENSMUST00000226422 6333 ntAPPRIS ALT2 BASIC18.5■□□□□ 0.55
Cdc40Q9DC48 Marc1-202ENSMUST00000110992 2152 ntAPPRIS ALT2 TSL 5 BASIC18.49■□□□□ 0.55
Cdc40Q9DC48 Tpm1-212ENSMUST00000113696 1714 ntTSL 2 BASIC18.49■□□□□ 0.55
Cdc40Q9DC48 Ssbp1-205ENSMUST00000121360 1188 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Cdc40Q9DC48 Cdv3-ps-201ENSMUST00000169632 827 ntBASIC18.49■□□□□ 0.55
Cdc40Q9DC48 Cyc1-201ENSMUST00000023210 1194 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Cdc40Q9DC48 Cntfr-203ENSMUST00000102961 1995 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Cdc40Q9DC48 Klc3-204ENSMUST00000108459 1849 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
Cdc40Q9DC48 Kcnn2-203ENSMUST00000169783 1625 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
Cdc40Q9DC48 Nr5a1-202ENSMUST00000112883 2994 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Cdc40Q9DC48 Erh-201ENSMUST00000021559 1293 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Cdc40Q9DC48 Hsf1-207ENSMUST00000228371 2102 ntBASIC18.48■□□□□ 0.55
Cdc40Q9DC48 Sptbn4-201ENSMUST00000011895 8747 ntAPPRIS P2 TSL 1 (best) BASIC18.48■□□□□ 0.55
Cdc40Q9DC48 Mapkapk2-201ENSMUST00000016672 2854 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Cdc40Q9DC48 Snx5-201ENSMUST00000028909 2419 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Cdc40Q9DC48 Sort1-203ENSMUST00000135636 6836 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
Cdc40Q9DC48 Tmem9-202ENSMUST00000117950 847 ntAPPRIS P1 TSL 2 BASIC18.47■□□□□ 0.55
Cdc40Q9DC48 Serbp1-212ENSMUST00000204294 717 ntTSL 5 BASIC18.47■□□□□ 0.55
Cdc40Q9DC48 Gm7143-201ENSMUST00000222811 859 ntBASIC18.47■□□□□ 0.55
Cdc40Q9DC48 1700056E22Rik-201ENSMUST00000050306 967 ntAPPRIS P1 BASIC18.47■□□□□ 0.55
Cdc40Q9DC48 Ppp2ca-201ENSMUST00000020608 7102 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Cdc40Q9DC48 Atp8b2-202ENSMUST00000107396 5705 ntAPPRIS ALT2 TSL 5 BASIC18.47■□□□□ 0.55
Cdc40Q9DC48 Ripply3-201ENSMUST00000023660 1531 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Cdc40Q9DC48 Hira-201ENSMUST00000004222 4218 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Cdc40Q9DC48 Serpinh1-202ENSMUST00000169437 2274 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Cdc40Q9DC48 Nol4l-201ENSMUST00000035346 6399 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Cdc40Q9DC48 Fbxo24-201ENSMUST00000031732 2161 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Cdc40Q9DC48 Dennd6a-202ENSMUST00000203874 2677 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
Cdc40Q9DC48 Hhex-201ENSMUST00000025944 1802 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Cdc40Q9DC48 Gab2-202ENSMUST00000206791 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
Cdc40Q9DC48 Cog1-202ENSMUST00000063776 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
Cdc40Q9DC48 Htra2-203ENSMUST00000113963 1629 ntTSL 5 BASIC18.46■□□□□ 0.55
Cdc40Q9DC48 Tcte2-209ENSMUST00000143162 1221 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
Cdc40Q9DC48 0610039K10Rik-202ENSMUST00000184724 952 ntBASIC18.46■□□□□ 0.55
Cdc40Q9DC48 Gm2464-202ENSMUST00000194841 877 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
Cdc40Q9DC48 Rnf187-202ENSMUST00000217262 711 ntAPPRIS P2 TSL 1 (best) BASIC18.46■□□□□ 0.55
Cdc40Q9DC48 Stx3-202ENSMUST00000069285 2810 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Cdc40Q9DC48 Lsr-203ENSMUST00000108116 2071 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
Cdc40Q9DC48 Lzts2-202ENSMUST00000178087 2773 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Cdc40Q9DC48 Slc9a3r2-201ENSMUST00000002572 2118 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Cdc40Q9DC48 Lsm12-201ENSMUST00000021297 2256 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.54
Cdc40Q9DC48 Slc35a2-209ENSMUST00000208397 1374 ntAPPRIS ALT2 TSL 5 BASIC18.45■□□□□ 0.54
Cdc40Q9DC48 Cdc14b-201ENSMUST00000039318 5859 ntAPPRIS P3 TSL 1 (best) BASIC18.45■□□□□ 0.54
Cdc40Q9DC48 Fbxw2-202ENSMUST00000091020 1838 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
Cdc40Q9DC48 Gclm-206ENSMUST00000178826 1002 ntAPPRIS P1 TSL 5 BASIC18.45■□□□□ 0.54
Cdc40Q9DC48 Gm43137-201ENSMUST00000198052 594 ntBASIC18.45■□□□□ 0.54
Cdc40Q9DC48 AC138214.1-201ENSMUST00000223838 420 ntAPPRIS P1 BASIC18.45■□□□□ 0.54
Cdc40Q9DC48 Spata33-201ENSMUST00000060133 491 ntAPPRIS P2 TSL 1 (best) BASIC18.45■□□□□ 0.54
Cdc40Q9DC48 Ubald2-201ENSMUST00000057676 1482 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Cdc40Q9DC48 Best2-201ENSMUST00000059072 1971 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Cdc40Q9DC48 Thap11-201ENSMUST00000040445 1819 ntAPPRIS P1 BASIC18.44■□□□□ 0.54
Cdc40Q9DC48 Hdgfl3-202ENSMUST00000107305 5887 ntAPPRIS P2 TSL 1 (best) BASIC18.44■□□□□ 0.54
Cdc40Q9DC48 Gm14207-203ENSMUST00000156538 988 ntTSL 2 BASIC18.44■□□□□ 0.54
Cdc40Q9DC48 AC104834.1-201ENSMUST00000222611 1056 ntAPPRIS P1 BASIC18.44■□□□□ 0.54
Cdc40Q9DC48 Gltpd2-201ENSMUST00000057685 1216 ntAPPRIS P2 TSL 1 (best) BASIC18.44■□□□□ 0.54
Cdc40Q9DC48 Krtap5-5-201ENSMUST00000097942 1177 ntAPPRIS P1 BASIC18.44■□□□□ 0.54
Cdc40Q9DC48 Spast-202ENSMUST00000224711 2066 ntAPPRIS ALT2 BASIC18.44■□□□□ 0.54
Cdc40Q9DC48 Sp5-201ENSMUST00000100043 2100 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Cdc40Q9DC48 Notumos-201ENSMUST00000151998 2659 ntBASIC18.44■□□□□ 0.54
Cdc40Q9DC48 Prkar2b-201ENSMUST00000003079 1657 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Cdc40Q9DC48 Gab1-201ENSMUST00000034150 4870 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Cdc40Q9DC48 3110053B16Rik-202ENSMUST00000140360 2004 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
Cdc40Q9DC48 Ubxn2a-203ENSMUST00000142867 2146 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Cdc40Q9DC48 Akt1-201ENSMUST00000001780 2690 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Cdc40Q9DC48 Utp11-201ENSMUST00000030738 1603 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Cdc40Q9DC48 Pdcd5-201ENSMUST00000118501 684 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Cdc40Q9DC48 Polr3gl-204ENSMUST00000145001 607 ntTSL 3 BASIC18.43■□□□□ 0.54
Cdc40Q9DC48 Nol7-205ENSMUST00000222499 756 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
Cdc40Q9DC48 Gpx4-201ENSMUST00000097227 995 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
Cdc40Q9DC48 Gm3448-202ENSMUST00000097400 747 ntAPPRIS ALT2 TSL 5 BASIC18.43■□□□□ 0.54
Cdc40Q9DC48 Dusp28-201ENSMUST00000060913 1314 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Cdc40Q9DC48 Gab2-201ENSMUST00000004622 6168 ntAPPRIS P3 TSL 1 (best) BASIC18.43■□□□□ 0.54
Cdc40Q9DC48 Chadl-201ENSMUST00000072910 2548 ntAPPRIS P1 TSL 5 BASIC18.43■□□□□ 0.54
Cdc40Q9DC48 Mmp24-201ENSMUST00000029141 4306 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Cdc40Q9DC48 Ntf5-201ENSMUST00000058879 1963 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Cdc40Q9DC48 Ezh2-201ENSMUST00000081721 2787 ntAPPRIS P2 TSL 1 (best) BASIC18.42■□□□□ 0.54
Cdc40Q9DC48 Rfx8-202ENSMUST00000151913 2008 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Cdc40Q9DC48 Sdhaf1-201ENSMUST00000098586 2490 ntAPPRIS P1 BASIC18.42■□□□□ 0.54
Cdc40Q9DC48 Zfp3-201ENSMUST00000060444 2061 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Cdc40Q9DC48 Zfp653-202ENSMUST00000179605 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
Cdc40Q9DC48 Glipr2-201ENSMUST00000030202 2320 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Cdc40Q9DC48 Pnkd-204ENSMUST00000113805 740 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
Cdc40Q9DC48 BC004004-202ENSMUST00000120346 1297 ntAPPRIS P1 TSL 5 BASIC18.42■□□□□ 0.54
Retrieved 100 of 76,532 protein–RNA pairs in 16.9 ms