Protein–RNA interactions for Protein: Q8CEG5

Ccdc28b, Coiled-coil domain-containing protein 28B, mousemouse

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc28bQ8CEG5 Magi2-206ENSMUST00000197443 6578 ntAPPRIS ALT2 TSL 5 BASIC19.73■□□□□ 0.75
Ccdc28bQ8CEG5 Rhbdf1-201ENSMUST00000020524 2946 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Ccdc28bQ8CEG5 Pbx1-202ENSMUST00000072863 1709 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
Ccdc28bQ8CEG5 Gdf11-201ENSMUST00000026408 4062 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Ccdc28bQ8CEG5 Camk2b-201ENSMUST00000002817 1872 ntTSL 5 BASIC19.73■□□□□ 0.75
Ccdc28bQ8CEG5 Emc6-201ENSMUST00000054952 1332 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Ccdc28bQ8CEG5 Kcnn2-208ENSMUST00000211323 2046 ntAPPRIS P2 TSL 1 (best) BASIC19.73■□□□□ 0.75
Ccdc28bQ8CEG5 Map6-202ENSMUST00000107100 2335 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
Ccdc28bQ8CEG5 Brd1-201ENSMUST00000088911 4702 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
Ccdc28bQ8CEG5 Zfp623-201ENSMUST00000037260 2463 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Ccdc28bQ8CEG5 Zbtb7a-203ENSMUST00000119606 1841 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Ccdc28bQ8CEG5 Baiap2l2-201ENSMUST00000165408 2100 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Ccdc28bQ8CEG5 Cdk5r2-201ENSMUST00000160379 2799 ntAPPRIS P1 BASIC19.72■□□□□ 0.75
Ccdc28bQ8CEG5 Zmiz2-201ENSMUST00000012612 4199 ntAPPRIS P2 TSL 5 BASIC19.72■□□□□ 0.75
Ccdc28bQ8CEG5 Dact3-201ENSMUST00000108493 2989 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Ccdc28bQ8CEG5 Klf16-201ENSMUST00000038558 2674 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Ccdc28bQ8CEG5 Prr7-201ENSMUST00000046533 1359 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Ccdc28bQ8CEG5 Rnf8-201ENSMUST00000024817 2077 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Ccdc28bQ8CEG5 Ttc9b-201ENSMUST00000008088 2052 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Ccdc28bQ8CEG5 Atmin-201ENSMUST00000109099 4877 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Ccdc28bQ8CEG5 Nsmf-205ENSMUST00000114386 2685 ntTSL 5 BASIC19.7■□□□□ 0.74
Ccdc28bQ8CEG5 Ung-202ENSMUST00000102584 2136 ntAPPRIS P3 TSL 1 (best) BASIC19.7■□□□□ 0.74
Ccdc28bQ8CEG5 Hipk1-201ENSMUST00000029438 4185 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Ccdc28bQ8CEG5 Kif27-203ENSMUST00000225388 5121 ntAPPRIS P1 BASIC19.7■□□□□ 0.74
Ccdc28bQ8CEG5 Luc7l2-201ENSMUST00000057692 2702 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Ccdc28bQ8CEG5 Adamts18-201ENSMUST00000093113 5642 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Ccdc28bQ8CEG5 AW047730-202ENSMUST00000181406 2579 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
Ccdc28bQ8CEG5 Mpped1-208ENSMUST00000163723 1064 ntTSL 5 BASIC19.7■□□□□ 0.74
Ccdc28bQ8CEG5 Gm45371-201ENSMUST00000210723 459 ntTSL 3 BASIC19.7■□□□□ 0.74
Ccdc28bQ8CEG5 Rab24-201ENSMUST00000035242 1168 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Ccdc28bQ8CEG5 Fam50b-202ENSMUST00000221037 1345 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Ccdc28bQ8CEG5 Celf6-202ENSMUST00000118164 1583 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
Ccdc28bQ8CEG5 Rims1-209ENSMUST00000218140 1434 ntTSL 5 BASIC19.69■□□□□ 0.74
Ccdc28bQ8CEG5 Hcn2-201ENSMUST00000020581 3089 ntAPPRIS P1 TSL 5 BASIC19.69■□□□□ 0.74
Ccdc28bQ8CEG5 Gm42900-201ENSMUST00000197184 2167 ntBASIC19.69■□□□□ 0.74
Ccdc28bQ8CEG5 Spg7-209ENSMUST00000149248 2896 ntAPPRIS P2 TSL 1 (best) BASIC19.69■□□□□ 0.74
Ccdc28bQ8CEG5 Hpf1-204ENSMUST00000146863 531 ntTSL 2 BASIC19.69■□□□□ 0.74
Ccdc28bQ8CEG5 Klf1-201ENSMUST00000067060 1530 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Ccdc28bQ8CEG5 Tmem120a-201ENSMUST00000043378 1559 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Ccdc28bQ8CEG5 D130058E05Rik-201ENSMUST00000173856 1372 ntTSL 2 BASIC19.69■□□□□ 0.74
Ccdc28bQ8CEG5 Tulp1-201ENSMUST00000041819 2017 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Ccdc28bQ8CEG5 Lrrfip2-205ENSMUST00000196981 1839 ntAPPRIS ALT2 TSL 5 BASIC19.68■□□□□ 0.74
Ccdc28bQ8CEG5 Hoxd11-202ENSMUST00000142312 1111 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Ccdc28bQ8CEG5 Ak2-201ENSMUST00000030583 986 ntAPPRIS P4 TSL 1 (best) BASIC19.68■□□□□ 0.74
Ccdc28bQ8CEG5 Irx5-201ENSMUST00000034184 2450 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Ccdc28bQ8CEG5 Foxa3-201ENSMUST00000036018 2037 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Ccdc28bQ8CEG5 Col9a3-203ENSMUST00000132527 3046 ntAPPRIS P1 TSL 5 BASIC19.67■□□□□ 0.74
Ccdc28bQ8CEG5 Cdkl3-207ENSMUST00000109080 2749 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
Ccdc28bQ8CEG5 Papola-211ENSMUST00000166735 1033 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
Ccdc28bQ8CEG5 Ildr2-202ENSMUST00000192426 1238 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
Ccdc28bQ8CEG5 Mrpl23-201ENSMUST00000038675 692 ntAPPRIS P2 TSL 1 (best) BASIC19.67■□□□□ 0.74
Ccdc28bQ8CEG5 Pithd1-201ENSMUST00000105851 1700 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Ccdc28bQ8CEG5 Ntn5-202ENSMUST00000182750 1758 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Ccdc28bQ8CEG5 Srsf4-202ENSMUST00000053819 2257 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Ccdc28bQ8CEG5 Shkbp1-201ENSMUST00000003857 2358 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Ccdc28bQ8CEG5 Ubp1-201ENSMUST00000009885 3742 ntAPPRIS ALT1 TSL 5 BASIC19.66■□□□□ 0.74
Ccdc28bQ8CEG5 2310022A10Rik-205ENSMUST00000187960 1989 ntAPPRIS ALT2 TSL 5 BASIC19.66■□□□□ 0.74
Ccdc28bQ8CEG5 Map4k3-201ENSMUST00000025089 4225 ntAPPRIS P2 TSL 5 BASIC19.66■□□□□ 0.74
Ccdc28bQ8CEG5 Trib3-201ENSMUST00000040312 2026 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Ccdc28bQ8CEG5 Lmtk3-204ENSMUST00000209617 5051 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
Ccdc28bQ8CEG5 Rela-201ENSMUST00000025867 2716 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Ccdc28bQ8CEG5 Surf4-201ENSMUST00000015011 3281 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Ccdc28bQ8CEG5 Porcn-203ENSMUST00000089402 1839 ntAPPRIS ALT1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Ccdc28bQ8CEG5 Ankrd40-203ENSMUST00000107818 3487 ntAPPRIS P3 TSL 5 BASIC19.66■□□□□ 0.74
Ccdc28bQ8CEG5 Ccdc149-202ENSMUST00000198008 2470 ntTSL 5 BASIC19.66■□□□□ 0.74
Ccdc28bQ8CEG5 Btbd2-201ENSMUST00000003434 3026 ntAPPRIS P2 TSL 5 BASIC19.66■□□□□ 0.74
Ccdc28bQ8CEG5 Chd5-205ENSMUST00000164662 9375 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
Ccdc28bQ8CEG5 Atf6b-201ENSMUST00000015605 2566 ntAPPRIS P2 TSL 1 (best) BASIC19.66■□□□□ 0.74
Ccdc28bQ8CEG5 Mfsd6-205ENSMUST00000156876 4932 ntAPPRIS P4 TSL 5 BASIC19.66■□□□□ 0.74
Ccdc28bQ8CEG5 Chtf8-201ENSMUST00000169312 2730 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
Ccdc28bQ8CEG5 Dhx33-204ENSMUST00000124464 1835 ntTSL 5 BASIC19.65■□□□□ 0.74
Ccdc28bQ8CEG5 Csf2ra-201ENSMUST00000076046 1849 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Ccdc28bQ8CEG5 Agtpbp1-222ENSMUST00000171606 3037 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
Ccdc28bQ8CEG5 Rcor1-201ENSMUST00000084968 5684 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
Ccdc28bQ8CEG5 Dmwd-202ENSMUST00000108479 2388 ntAPPRIS ALT2 TSL 5 BASIC19.65■□□□□ 0.74
Ccdc28bQ8CEG5 Map2k2-207ENSMUST00000143517 2405 ntAPPRIS P3 TSL 1 (best) BASIC19.65■□□□□ 0.74
Ccdc28bQ8CEG5 Neurl4-213ENSMUST00000177476 4952 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
Ccdc28bQ8CEG5 Klc3-201ENSMUST00000047170 1901 ntTSL 1 (best) BASIC19.64■□□□□ 0.74
Ccdc28bQ8CEG5 Dolk-201ENSMUST00000100219 2104 ntAPPRIS P1 BASIC19.64■□□□□ 0.74
Ccdc28bQ8CEG5 Gm5784-201ENSMUST00000179344 2478 ntBASIC19.64■□□□□ 0.74
Ccdc28bQ8CEG5 Tmem121b-201ENSMUST00000178687 4869 ntAPPRIS P1 BASIC19.64■□□□□ 0.73
Ccdc28bQ8CEG5 Atp8a1-203ENSMUST00000113651 808 ntTSL 5 BASIC19.64■□□□□ 0.73
Ccdc28bQ8CEG5 Acad9-205ENSMUST00000196648 552 ntTSL 3 BASIC19.64■□□□□ 0.73
Ccdc28bQ8CEG5 Cnpy3-201ENSMUST00000059844 1908 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Ccdc28bQ8CEG5 Vmn1r17-205ENSMUST00000228342 2230 ntAPPRIS P2 BASIC19.64■□□□□ 0.73
Ccdc28bQ8CEG5 Cebpa-201ENSMUST00000042985 2626 ntAPPRIS P1 BASIC19.64■□□□□ 0.73
Ccdc28bQ8CEG5 Rapgef1-201ENSMUST00000091146 6212 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
Ccdc28bQ8CEG5 Spata2l-201ENSMUST00000098327 2380 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Ccdc28bQ8CEG5 Cracr2b-201ENSMUST00000053670 1698 ntAPPRIS P2 TSL 1 (best) BASIC19.63■□□□□ 0.73
Ccdc28bQ8CEG5 Metrnl-201ENSMUST00000036742 1401 ntAPPRIS P2 TSL 1 (best) BASIC19.63■□□□□ 0.73
Ccdc28bQ8CEG5 Cgrrf1-201ENSMUST00000068532 1324 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Ccdc28bQ8CEG5 H1fx-201ENSMUST00000056403 1217 ntAPPRIS P1 BASIC19.63■□□□□ 0.73
Ccdc28bQ8CEG5 Hcn2-202ENSMUST00000099513 3195 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Ccdc28bQ8CEG5 Rasef-203ENSMUST00000222414 2127 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
Ccdc28bQ8CEG5 Dus1l-203ENSMUST00000106135 1863 ntAPPRIS ALT2 TSL 5 BASIC19.62■□□□□ 0.73
Ccdc28bQ8CEG5 Rem2-202ENSMUST00000164766 1884 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Ccdc28bQ8CEG5 Gm13448-201ENSMUST00000143469 1847 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
Ccdc28bQ8CEG5 Magi2-202ENSMUST00000101558 6530 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
Ccdc28bQ8CEG5 B3galnt2-207ENSMUST00000221974 2439 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Ccdc28bQ8CEG5 Fastk-202ENSMUST00000115041 1399 ntAPPRIS ALT2 TSL 5 BASIC19.62■□□□□ 0.73
Retrieved 100 of 76,532 protein–RNA pairs in 34 ms