Protein–RNA interactions for Protein: Q8C0E3

Trim47, Tripartite motif-containing protein 47, mousemouse

Predictions only

Length 641 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim47Q8C0E3 1700086O06Rik-202ENSMUST00000181871 1564 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
Trim47Q8C0E3 Tomm40-202ENSMUST00000093552 1577 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
Trim47Q8C0E3 Gng5-203ENSMUST00000119130 593 ntTSL 2 BASIC22.25■■□□□ 1.15
Trim47Q8C0E3 Gm13620-201ENSMUST00000131198 511 ntTSL 3 BASIC22.25■■□□□ 1.15
Trim47Q8C0E3 Fbxl15-202ENSMUST00000177667 1243 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
Trim47Q8C0E3 Flvcr1-202ENSMUST00000191946 1216 ntBASIC22.25■■□□□ 1.15
Trim47Q8C0E3 Spcs1-204ENSMUST00000226782 949 ntBASIC22.25■■□□□ 1.15
Trim47Q8C0E3 Pcgf6-201ENSMUST00000026032 2098 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
Trim47Q8C0E3 Ihh-201ENSMUST00000164097 2468 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
Trim47Q8C0E3 Efcc1-201ENSMUST00000032132 2729 ntAPPRIS ALT2 TSL 5 BASIC22.25■■□□□ 1.15
Trim47Q8C0E3 Dnajb11-205ENSMUST00000178320 1628 ntAPPRIS P1 TSL 5 BASIC22.24■■□□□ 1.15
Trim47Q8C0E3 Gm10209-201ENSMUST00000203397 1607 ntBASIC22.24■■□□□ 1.15
Trim47Q8C0E3 Gm9934-201ENSMUST00000098303 2077 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
Trim47Q8C0E3 Rem2-202ENSMUST00000164766 1884 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
Trim47Q8C0E3 Nipsnap2-201ENSMUST00000086046 2112 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
Trim47Q8C0E3 Taf4-204ENSMUST00000227325 4380 ntAPPRIS ALT2 BASIC22.24■■□□□ 1.15
Trim47Q8C0E3 Bola1-202ENSMUST00000107099 995 ntAPPRIS P1 TSL 2 BASIC22.24■■□□□ 1.15
Trim47Q8C0E3 Bola1-201ENSMUST00000016087 729 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
Trim47Q8C0E3 Gm20621-202ENSMUST00000176618 1234 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
Trim47Q8C0E3 Bola1-203ENSMUST00000177442 692 ntAPPRIS P1 TSL 3 BASIC22.24■■□□□ 1.15
Trim47Q8C0E3 Gm43173-201ENSMUST00000202246 593 ntBASIC22.24■■□□□ 1.15
Trim47Q8C0E3 Nol7-205ENSMUST00000222499 756 ntAPPRIS ALT2 TSL 1 (best) BASIC22.24■■□□□ 1.15
Trim47Q8C0E3 Fam96b-201ENSMUST00000093234 639 ntTSL 5 BASIC22.24■■□□□ 1.15
Trim47Q8C0E3 Ccnjl-201ENSMUST00000050574 2672 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
Trim47Q8C0E3 Uap1-202ENSMUST00000111350 2311 ntAPPRIS ALT1 TSL 1 (best) BASIC22.24■■□□□ 1.15
Trim47Q8C0E3 Zcchc2-202ENSMUST00000119166 6368 ntAPPRIS ALT2 TSL 1 (best) BASIC22.23■■□□□ 1.15
Trim47Q8C0E3 3110053B16Rik-202ENSMUST00000140360 2004 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
Trim47Q8C0E3 Fam49b-202ENSMUST00000164532 1770 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
Trim47Q8C0E3 Arhgap27-202ENSMUST00000092557 1504 ntTSL 2 BASIC22.23■■□□□ 1.15
Trim47Q8C0E3 H2-Q7-204ENSMUST00000116598 1134 ntTSL 5 BASIC22.23■■□□□ 1.15
Trim47Q8C0E3 Thap8-201ENSMUST00000014072 1182 ntAPPRIS ALT2 TSL 5 BASIC22.23■■□□□ 1.15
Trim47Q8C0E3 Gm7160-202ENSMUST00000188519 1027 ntBASIC22.23■■□□□ 1.15
Trim47Q8C0E3 Gm43017-201ENSMUST00000198296 752 ntBASIC22.23■■□□□ 1.15
Trim47Q8C0E3 4930519A11Rik-202ENSMUST00000221053 667 ntTSL 3 BASIC22.23■■□□□ 1.15
Trim47Q8C0E3 Wdr41-208ENSMUST00000222995 1112 ntTSL 5 BASIC22.23■■□□□ 1.15
Trim47Q8C0E3 Trnau1ap-201ENSMUST00000030730 1130 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
Trim47Q8C0E3 Faap24-201ENSMUST00000032704 1857 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
Trim47Q8C0E3 Arpc2-202ENSMUST00000113819 1313 ntTSL 5 BASIC22.23■■□□□ 1.15
Trim47Q8C0E3 Gyg-201ENSMUST00000118015 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC22.23■■□□□ 1.15
Trim47Q8C0E3 Spock1-204ENSMUST00000186271 2005 ntAPPRIS P3 TSL 1 (best) BASIC22.23■■□□□ 1.15
Trim47Q8C0E3 Dnajb2-206ENSMUST00000187058 1732 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
Trim47Q8C0E3 Dalrd3-201ENSMUST00000019183 1746 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
Trim47Q8C0E3 Ppp4r2-201ENSMUST00000063854 4874 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
Trim47Q8C0E3 Gm38160-201ENSMUST00000193090 2499 ntBASIC22.22■■□□□ 1.15
Trim47Q8C0E3 Ssx2ip-203ENSMUST00000106151 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC22.22■■□□□ 1.15
Trim47Q8C0E3 Arhgdia-202ENSMUST00000106197 1867 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
Trim47Q8C0E3 Hpse-202ENSMUST00000112908 1958 ntAPPRIS ALT2 TSL 1 (best) BASIC22.22■■□□□ 1.15
Trim47Q8C0E3 Gsc-201ENSMUST00000021513 1268 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
Trim47Q8C0E3 Cdkl3-202ENSMUST00000063321 2008 ntAPPRIS ALT2 TSL 1 (best) BASIC22.22■■□□□ 1.15
Trim47Q8C0E3 Raph1-202ENSMUST00000090293 2409 ntAPPRIS ALT2 TSL 5 BASIC22.22■■□□□ 1.15
Trim47Q8C0E3 Lhx2-201ENSMUST00000000253 2840 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
Trim47Q8C0E3 Tbc1d24-201ENSMUST00000024931 4894 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
Trim47Q8C0E3 Trp73os-201ENSMUST00000143429 2192 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
Trim47Q8C0E3 Kctd9-201ENSMUST00000078053 3157 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
Trim47Q8C0E3 Bcl10-201ENSMUST00000029842 1949 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
Trim47Q8C0E3 Tm2d1-202ENSMUST00000102793 1027 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
Trim47Q8C0E3 Gm4285-201ENSMUST00000131222 902 ntTSL 2 BASIC22.21■■□□□ 1.15
Trim47Q8C0E3 Far2os2-201ENSMUST00000149815 980 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
Trim47Q8C0E3 Kiss1-204ENSMUST00000194044 583 ntAPPRIS P1 TSL 2 BASIC22.21■■□□□ 1.15
Trim47Q8C0E3 Rap1a-201ENSMUST00000090678 2407 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
Trim47Q8C0E3 Hoxd4-202ENSMUST00000111980 1494 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
Trim47Q8C0E3 Ankrd33b-203ENSMUST00000110410 2070 ntAPPRIS P3 TSL 1 (best) BASIC22.21■■□□□ 1.15
Trim47Q8C0E3 Gm9817-201ENSMUST00000054395 2531 ntAPPRIS P1 BASIC22.2■■□□□ 1.14
Trim47Q8C0E3 Gm29394-204ENSMUST00000177504 448 ntAPPRIS ALT2 TSL 3 BASIC22.2■■□□□ 1.14
Trim47Q8C0E3 Gm2011-201ENSMUST00000203124 1263 ntBASIC22.2■■□□□ 1.14
Trim47Q8C0E3 AC164441.1-202ENSMUST00000223430 442 ntTSL 2 BASIC22.2■■□□□ 1.14
Trim47Q8C0E3 Gm1673-201ENSMUST00000094869 477 ntAPPRIS P3 TSL 1 (best) BASIC22.2■■□□□ 1.14
Trim47Q8C0E3 Trim47-201ENSMUST00000021120 2204 ntAPPRIS P4 TSL 1 (best) BASIC22.2■■□□□ 1.14
Trim47Q8C0E3 Ubl3-201ENSMUST00000079324 2537 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
Trim47Q8C0E3 Sh3bp1-204ENSMUST00000109698 1923 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
Trim47Q8C0E3 Trmt112-201ENSMUST00000088257 957 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
Trim47Q8C0E3 Paip2-203ENSMUST00000115735 1521 ntAPPRIS P1 TSL 5 BASIC22.19■■□□□ 1.14
Trim47Q8C0E3 Tex264-202ENSMUST00000163441 1896 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
Trim47Q8C0E3 Gm37035-201ENSMUST00000194809 2148 ntBASIC22.19■■□□□ 1.14
Trim47Q8C0E3 Dbf4-207ENSMUST00000171808 2402 ntAPPRIS P3 TSL 1 (best) BASIC22.18■■□□□ 1.14
Trim47Q8C0E3 Cdkl3-210ENSMUST00000121591 2387 ntAPPRIS ALT2 TSL 1 (best) BASIC22.18■■□□□ 1.14
Trim47Q8C0E3 Notum-203ENSMUST00000106178 2012 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
Trim47Q8C0E3 1700105P06Rik-201ENSMUST00000186160 1772 ntBASIC22.18■■□□□ 1.14
Trim47Q8C0E3 Rer1-201ENSMUST00000030914 1596 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
Trim47Q8C0E3 Srsf1-202ENSMUST00000107920 1209 ntTSL 5 BASIC22.18■■□□□ 1.14
Trim47Q8C0E3 2810001G20Rik-202ENSMUST00000146333 959 ntTSL 3 BASIC22.18■■□□□ 1.14
Trim47Q8C0E3 Mettl25-201ENSMUST00000046638 2033 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
Trim47Q8C0E3 Mcam-201ENSMUST00000034650 2989 ntAPPRIS P2 TSL 1 (best) BASIC22.17■■□□□ 1.14
Trim47Q8C0E3 Mgll-202ENSMUST00000113581 1308 ntTSL 5 BASIC22.17■■□□□ 1.14
Trim47Q8C0E3 Aktip-201ENSMUST00000109609 1171 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
Trim47Q8C0E3 Krtap5-4-201ENSMUST00000061403 1046 ntAPPRIS P1 BASIC22.17■■□□□ 1.14
Trim47Q8C0E3 Osbpl2-201ENSMUST00000040668 2805 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
Trim47Q8C0E3 Adrm1-201ENSMUST00000061437 1535 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
Trim47Q8C0E3 Krtap5-2-202ENSMUST00000190456 1471 ntAPPRIS P2 BASIC22.16■■□□□ 1.14
Trim47Q8C0E3 Agmat-201ENSMUST00000038161 1407 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
Trim47Q8C0E3 Man1a-201ENSMUST00000003843 5137 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
Trim47Q8C0E3 Tial1-209ENSMUST00000141126 1344 ntTSL 5 BASIC22.16■■□□□ 1.14
Trim47Q8C0E3 Ercc6l2-208ENSMUST00000144763 1820 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
Trim47Q8C0E3 Tekt5-201ENSMUST00000043415 1803 ntAPPRIS ALT2 TSL 1 (best) BASIC22.16■■□□□ 1.14
Trim47Q8C0E3 Capn10-202ENSMUST00000117814 1268 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
Trim47Q8C0E3 Pigx-210ENSMUST00000155966 963 ntAPPRIS ALT2 TSL 2 BASIC22.16■■□□□ 1.14
Trim47Q8C0E3 D830025C05Rik-201ENSMUST00000059474 976 ntBASIC22.16■■□□□ 1.14
Trim47Q8C0E3 Kctd17-201ENSMUST00000089414 1180 ntAPPRIS ALT2 TSL 5 BASIC22.16■■□□□ 1.14
Trim47Q8C0E3 Cpsf4-202ENSMUST00000160422 1756 ntAPPRIS ALT1 TSL 5 BASIC22.16■■□□□ 1.14
Trim47Q8C0E3 Ctdsp1-201ENSMUST00000027367 2876 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
Retrieved 100 of 76,532 protein–RNA pairs in 12.5 ms