Protein–RNA interactions for Protein: Q8BI79

Ccdc40, Coiled-coil domain-containing protein 40, mousemouse

Predictions only

Length 1,192 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc40Q8BI79 Ntf5-201ENSMUST00000058879 1963 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Ccdc40Q8BI79 Clint1-202ENSMUST00000109261 3365 ntAPPRIS ALT2 TSL 5 BASIC20.72■□□□□ 0.91
Ccdc40Q8BI79 Dll3-201ENSMUST00000108315 2618 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Ccdc40Q8BI79 Tsc22d1-203ENSMUST00000101618 1043 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
Ccdc40Q8BI79 Bex4-201ENSMUST00000116527 837 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Ccdc40Q8BI79 Gm16253-201ENSMUST00000148290 550 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Ccdc40Q8BI79 Hoxd3os1-204ENSMUST00000156342 796 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
Ccdc40Q8BI79 Mt2-201ENSMUST00000034214 511 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Ccdc40Q8BI79 Hist2h2ab-201ENSMUST00000073115 444 ntAPPRIS P1 BASIC20.72■□□□□ 0.91
Ccdc40Q8BI79 Cnr1-201ENSMUST00000057188 5807 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Ccdc40Q8BI79 Spast-202ENSMUST00000224711 2066 ntAPPRIS ALT2 BASIC20.72■□□□□ 0.91
Ccdc40Q8BI79 Cd37-204ENSMUST00000209779 2541 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
Ccdc40Q8BI79 Timm8a1-201ENSMUST00000054213 1421 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Ccdc40Q8BI79 Klc3-201ENSMUST00000047170 1901 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
Ccdc40Q8BI79 Slc36a4-202ENSMUST00000115588 1745 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
Ccdc40Q8BI79 Oaz1-201ENSMUST00000060987 1071 ntAPPRIS ALT1 TSL 5 BASIC20.71■□□□□ 0.91
Ccdc40Q8BI79 Gm9959-201ENSMUST00000068277 390 ntBASIC20.71■□□□□ 0.91
Ccdc40Q8BI79 Fam89b-201ENSMUST00000099955 1197 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Ccdc40Q8BI79 Tinagl1-202ENSMUST00000105998 1976 ntAPPRIS P2 TSL 1 (best) BASIC20.71■□□□□ 0.91
Ccdc40Q8BI79 Spsb3-204ENSMUST00000119829 1955 ntAPPRIS ALT2 TSL 2 BASIC20.71■□□□□ 0.91
Ccdc40Q8BI79 Ccng2-201ENSMUST00000031331 2810 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Ccdc40Q8BI79 Zfp653-202ENSMUST00000179605 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
Ccdc40Q8BI79 E130311K13Rik-201ENSMUST00000061706 1640 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Ccdc40Q8BI79 Ets1-202ENSMUST00000050797 1976 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
Ccdc40Q8BI79 Slc35a3-201ENSMUST00000029569 5725 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Ccdc40Q8BI79 Fiz1-202ENSMUST00000165320 2653 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Ccdc40Q8BI79 AC093043.1-201ENSMUST00000226700 898 ntBASIC20.7■□□□□ 0.9
Ccdc40Q8BI79 Sos1-201ENSMUST00000068714 8919 ntAPPRIS P1 TSL 2 BASIC20.7■□□□□ 0.9
Ccdc40Q8BI79 Zbtb10-201ENSMUST00000155203 7414 ntAPPRIS P1 TSL 5 BASIC20.7■□□□□ 0.9
Ccdc40Q8BI79 Bcl10-201ENSMUST00000029842 1949 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Ccdc40Q8BI79 Gm572-201ENSMUST00000105698 1385 ntAPPRIS P1 TSL 5 BASIC20.7■□□□□ 0.9
Ccdc40Q8BI79 Dgcr6-209ENSMUST00000155387 1415 ntTSL 3 BASIC20.7■□□□□ 0.9
Ccdc40Q8BI79 Pcgf6-201ENSMUST00000026032 2098 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Ccdc40Q8BI79 Cdan1-202ENSMUST00000110701 6384 ntAPPRIS P2 TSL 5 BASIC20.69■□□□□ 0.9
Ccdc40Q8BI79 Slc39a7-203ENSMUST00000169397 2107 ntAPPRIS P1 TSL 5 BASIC20.69■□□□□ 0.9
Ccdc40Q8BI79 Hipk1-201ENSMUST00000029438 4185 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Ccdc40Q8BI79 Ube2h-202ENSMUST00000102993 4657 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Ccdc40Q8BI79 Kcnk15-202ENSMUST00000109396 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
Ccdc40Q8BI79 Hoxa9-202ENSMUST00000114425 851 ntTSL 2 BASIC20.69■□□□□ 0.9
Ccdc40Q8BI79 Hrh3-203ENSMUST00000164442 1242 ntAPPRIS ALT2 TSL 5 BASIC20.69■□□□□ 0.9
Ccdc40Q8BI79 Acbd6-203ENSMUST00000097529 1255 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
Ccdc40Q8BI79 Atp10a-201ENSMUST00000168747 5419 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Ccdc40Q8BI79 Arhgap23-202ENSMUST00000107601 5450 ntTSL 5 BASIC20.69■□□□□ 0.9
Ccdc40Q8BI79 Epn1-202ENSMUST00000098845 2565 ntAPPRIS P2 TSL 1 (best) BASIC20.69■□□□□ 0.9
Ccdc40Q8BI79 Rexo5-201ENSMUST00000033218 1966 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
Ccdc40Q8BI79 Celf6-202ENSMUST00000118164 1583 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
Ccdc40Q8BI79 Cdk8-201ENSMUST00000031640 2973 ntAPPRIS P1 TSL 2 BASIC20.68■□□□□ 0.9
Ccdc40Q8BI79 Zc3h8-201ENSMUST00000028866 1624 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Ccdc40Q8BI79 Socs1-201ENSMUST00000038099 1220 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Ccdc40Q8BI79 Klf16-201ENSMUST00000038558 2674 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Ccdc40Q8BI79 Slc16a10-201ENSMUST00000092566 5397 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Ccdc40Q8BI79 Serbp1-207ENSMUST00000203436 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
Ccdc40Q8BI79 Sumf1-203ENSMUST00000167338 1044 ntAPPRIS ALT2 TSL 5 BASIC20.67■□□□□ 0.9
Ccdc40Q8BI79 Anp32e-210ENSMUST00000171368 878 ntTSL 3 BASIC20.67■□□□□ 0.9
Ccdc40Q8BI79 Zfp821-201ENSMUST00000034163 2127 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Ccdc40Q8BI79 B3galnt2-207ENSMUST00000221974 2439 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Ccdc40Q8BI79 Tmprss5-205ENSMUST00000170246 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
Ccdc40Q8BI79 Rasa1-201ENSMUST00000109552 4563 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Ccdc40Q8BI79 1700030C10Rik-203ENSMUST00000189625 1735 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
Ccdc40Q8BI79 Map4k3-202ENSMUST00000112389 4231 ntAPPRIS ALT1 TSL 5 BASIC20.67■□□□□ 0.9
Ccdc40Q8BI79 Tpst2-201ENSMUST00000031287 1835 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Ccdc40Q8BI79 Kcng3-201ENSMUST00000051482 3356 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Ccdc40Q8BI79 Rell2-210ENSMUST00000176104 2150 ntAPPRIS P1 TSL 5 BASIC20.66■□□□□ 0.9
Ccdc40Q8BI79 Olfm1-204ENSMUST00000113920 2513 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
Ccdc40Q8BI79 Socs2-202ENSMUST00000119917 948 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Ccdc40Q8BI79 Unc5b-201ENSMUST00000077925 5869 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Ccdc40Q8BI79 Gm9934-201ENSMUST00000098303 2077 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
Ccdc40Q8BI79 Foxf1-201ENSMUST00000181504 2415 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Ccdc40Q8BI79 Dact2-201ENSMUST00000053218 2808 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Ccdc40Q8BI79 Sh3gl1-201ENSMUST00000003268 2072 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Ccdc40Q8BI79 Slc9a2-201ENSMUST00000027231 5019 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Ccdc40Q8BI79 Grin2c-202ENSMUST00000106554 4895 ntAPPRIS P1 TSL 5 BASIC20.65■□□□□ 0.9
Ccdc40Q8BI79 Hyal2-203ENSMUST00000193747 1532 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
Ccdc40Q8BI79 Clta-204ENSMUST00000107849 1099 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
Ccdc40Q8BI79 Clta-205ENSMUST00000107851 1135 ntAPPRIS P4 TSL 2 BASIC20.65■□□□□ 0.9
Ccdc40Q8BI79 Lzts2-202ENSMUST00000178087 2773 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Ccdc40Q8BI79 Tmem64-201ENSMUST00000062684 4670 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Ccdc40Q8BI79 Adamts18-201ENSMUST00000093113 5642 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
Ccdc40Q8BI79 St3gal3-201ENSMUST00000030263 2549 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
Ccdc40Q8BI79 Suz12-206ENSMUST00000163272 4303 ntAPPRIS ALT2 TSL 5 BASIC20.64■□□□□ 0.89
Ccdc40Q8BI79 Hs3st4-201ENSMUST00000106437 3189 ntAPPRIS P1 TSL 3 BASIC20.64■□□□□ 0.89
Ccdc40Q8BI79 Wnk2-211ENSMUST00000162581 6628 ntAPPRIS ALT2 TSL 5 BASIC20.64■□□□□ 0.89
Ccdc40Q8BI79 Cnbp-208ENSMUST00000204653 2175 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
Ccdc40Q8BI79 Cnbp-201ENSMUST00000032138 2178 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
Ccdc40Q8BI79 Rps24-207ENSMUST00000224568 714 ntBASIC20.64■□□□□ 0.89
Ccdc40Q8BI79 Cuta-201ENSMUST00000025027 639 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.89
Ccdc40Q8BI79 Gm9870-201ENSMUST00000063874 645 ntBASIC20.64■□□□□ 0.89
Ccdc40Q8BI79 Pick1-204ENSMUST00000163571 2054 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.89
Ccdc40Q8BI79 Ubl3-202ENSMUST00000164904 2001 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Ccdc40Q8BI79 Ankrd33b-202ENSMUST00000076942 1641 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
Ccdc40Q8BI79 Azi2-205ENSMUST00000133580 2156 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Ccdc40Q8BI79 Trak1-208ENSMUST00000210636 2197 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
Ccdc40Q8BI79 Rnf8-201ENSMUST00000024817 2077 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Ccdc40Q8BI79 6330403K07Rik-201ENSMUST00000156068 1494 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
Ccdc40Q8BI79 Gm45102-201ENSMUST00000207427 857 ntBASIC20.63■□□□□ 0.89
Ccdc40Q8BI79 C1qc-201ENSMUST00000046332 1203 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Ccdc40Q8BI79 Cbfb-204ENSMUST00000109395 2709 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
Ccdc40Q8BI79 Agtpbp1-222ENSMUST00000171606 3037 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
Ccdc40Q8BI79 Siah2-201ENSMUST00000070368 2511 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Ccdc40Q8BI79 Ccnd3-201ENSMUST00000037333 1999 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Retrieved 100 of 76,532 protein–RNA pairs in 15.7 ms