Protein–RNA interactions for Protein: Q6PDX6

Rnf220, E3 ubiquitin-protein ligase Rnf220, mousemouse

Predictions only

Length 566 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf220Q6PDX6 Nipa2-202ENSMUST00000117812 3039 ntAPPRIS P1 TSL 2 BASIC18.84■□□□□ 0.61
Rnf220Q6PDX6 Htatsf1-202ENSMUST00000114751 1128 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
Rnf220Q6PDX6 Vegfa-212ENSMUST00000214739 1107 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
Rnf220Q6PDX6 Gas1-201ENSMUST00000065086 2961 ntAPPRIS ALT2 BASIC18.84■□□□□ 0.61
Rnf220Q6PDX6 Pigv-202ENSMUST00000067902 990 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
Rnf220Q6PDX6 Grk2-202ENSMUST00000088737 3376 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Rnf220Q6PDX6 Usp2-202ENSMUST00000065461 2057 ntAPPRIS P2 TSL 1 (best) BASIC18.84■□□□□ 0.61
Rnf220Q6PDX6 Cdk4-201ENSMUST00000006911 2053 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Rnf220Q6PDX6 Trib3-201ENSMUST00000040312 2026 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Rnf220Q6PDX6 Gal3st3-201ENSMUST00000061169 2421 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Rnf220Q6PDX6 Ddx39b-203ENSMUST00000173731 2848 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Rnf220Q6PDX6 Gfra1-208ENSMUST00000152507 1937 ntAPPRIS P1 TSL 5 BASIC18.84■□□□□ 0.61
Rnf220Q6PDX6 Dlg3-204ENSMUST00000113736 4940 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
Rnf220Q6PDX6 Nudt11-201ENSMUST00000103007 3036 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Rnf220Q6PDX6 Rapgef1-203ENSMUST00000102872 6402 ntAPPRIS P3 TSL 1 (best) BASIC18.84■□□□□ 0.61
Rnf220Q6PDX6 Eif3b-201ENSMUST00000100507 2945 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Rnf220Q6PDX6 Btg3-201ENSMUST00000023570 1414 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
Rnf220Q6PDX6 Syt5-201ENSMUST00000065957 1750 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
Rnf220Q6PDX6 Rbfa-201ENSMUST00000025462 1377 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
Rnf220Q6PDX6 Adamtsl5-201ENSMUST00000095446 1957 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.61
Rnf220Q6PDX6 Mrpl39-201ENSMUST00000116584 2294 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
Rnf220Q6PDX6 Gm38534-201ENSMUST00000206566 1909 ntTSL 5 BASIC18.83■□□□□ 0.6
Rnf220Q6PDX6 Gsc2-201ENSMUST00000012279 1172 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Rnf220Q6PDX6 Fance-201ENSMUST00000088007 1581 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.6
Rnf220Q6PDX6 Sqstm1-201ENSMUST00000015981 2673 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
Rnf220Q6PDX6 Rnf166-201ENSMUST00000014614 1783 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Rnf220Q6PDX6 Hhipl1-201ENSMUST00000021685 5174 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Rnf220Q6PDX6 Ripor2-202ENSMUST00000058009 2550 ntAPPRIS ALT2 TSL 2 BASIC18.83■□□□□ 0.6
Rnf220Q6PDX6 Fra10ac1-201ENSMUST00000067167 1402 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Rnf220Q6PDX6 Cacnb3-201ENSMUST00000003442 2819 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Rnf220Q6PDX6 Kctd15-201ENSMUST00000032709 2480 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Rnf220Q6PDX6 Fbxw2-202ENSMUST00000091020 1838 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Rnf220Q6PDX6 Adam22-205ENSMUST00000115385 2318 ntTSL 2 BASIC18.82■□□□□ 0.6
Rnf220Q6PDX6 Lifr-202ENSMUST00000164529 2844 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
Rnf220Q6PDX6 Dbp-203ENSMUST00000211357 1252 ntTSL 5 BASIC18.82■□□□□ 0.6
Rnf220Q6PDX6 Tbc1d10a-201ENSMUST00000041042 1957 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
Rnf220Q6PDX6 Lmbr1l-201ENSMUST00000023736 2300 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Rnf220Q6PDX6 Fmnl2-204ENSMUST00000127122 5508 ntTSL 5 BASIC18.81■□□□□ 0.6
Rnf220Q6PDX6 Gmcl1-201ENSMUST00000001185 2949 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Rnf220Q6PDX6 Ipmk-202ENSMUST00000118381 1323 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Rnf220Q6PDX6 Arfrp1-203ENSMUST00000127988 2447 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Rnf220Q6PDX6 Ccdc88a-202ENSMUST00000109477 1716 ntTSL 2 BASIC18.81■□□□□ 0.6
Rnf220Q6PDX6 Klhl15-203ENSMUST00000113911 1227 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Rnf220Q6PDX6 Hscb-201ENSMUST00000056937 804 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Rnf220Q6PDX6 Tmem121b-201ENSMUST00000178687 4869 ntAPPRIS P1 BASIC18.81■□□□□ 0.6
Rnf220Q6PDX6 St3gal5-202ENSMUST00000114112 2439 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
Rnf220Q6PDX6 Eva1b-203ENSMUST00000106152 1364 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Rnf220Q6PDX6 Dedd2-202ENSMUST00000205271 1942 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
Rnf220Q6PDX6 Pgs1-203ENSMUST00000132676 2863 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Rnf220Q6PDX6 4930452B06Rik-201ENSMUST00000102996 2681 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Rnf220Q6PDX6 Tusc3-201ENSMUST00000167992 1511 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Rnf220Q6PDX6 Syt7-203ENSMUST00000169121 6834 ntTSL 5 BASIC18.8■□□□□ 0.6
Rnf220Q6PDX6 Ddx41-201ENSMUST00000021956 2205 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Rnf220Q6PDX6 Vps26a-201ENSMUST00000092473 2712 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Rnf220Q6PDX6 Pmpca-202ENSMUST00000114093 1638 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Rnf220Q6PDX6 Fbxo24-202ENSMUST00000111002 2306 ntTSL 5 BASIC18.8■□□□□ 0.6
Rnf220Q6PDX6 Rell2-201ENSMUST00000070709 1767 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Rnf220Q6PDX6 Hspa5-202ENSMUST00000100171 2613 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Rnf220Q6PDX6 Gm45606-201ENSMUST00000209836 2795 ntBASIC18.8■□□□□ 0.6
Rnf220Q6PDX6 Unc119-203ENSMUST00000108295 1371 ntTSL 3 BASIC18.8■□□□□ 0.6
Rnf220Q6PDX6 Spata2-202ENSMUST00000109211 1531 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Rnf220Q6PDX6 Kansl1-205ENSMUST00000106977 5510 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
Rnf220Q6PDX6 Zfp579-201ENSMUST00000108572 2157 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
Rnf220Q6PDX6 Prss16-201ENSMUST00000006341 2155 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Rnf220Q6PDX6 Sox12-201ENSMUST00000063332 4169 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
Rnf220Q6PDX6 Adra2a-201ENSMUST00000036700 3801 ntAPPRIS P1 BASIC18.79■□□□□ 0.6
Rnf220Q6PDX6 Atf6b-201ENSMUST00000015605 2566 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
Rnf220Q6PDX6 Tmem164-201ENSMUST00000087333 5149 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Rnf220Q6PDX6 Dgcr6-207ENSMUST00000151266 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Rnf220Q6PDX6 Gm7276-201ENSMUST00000097520 1252 ntAPPRIS P1 BASIC18.79■□□□□ 0.6
Rnf220Q6PDX6 Gm35558-201ENSMUST00000222675 2219 ntBASIC18.79■□□□□ 0.6
Rnf220Q6PDX6 Vmn1r17-201ENSMUST00000227186 2234 ntAPPRIS P2 BASIC18.79■□□□□ 0.6
Rnf220Q6PDX6 Vmn1r17-205ENSMUST00000228342 2230 ntAPPRIS P2 BASIC18.79■□□□□ 0.6
Rnf220Q6PDX6 Tsen54-201ENSMUST00000021134 1979 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
Rnf220Q6PDX6 Dnaja4-201ENSMUST00000070070 3003 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Rnf220Q6PDX6 Fbxl5-204ENSMUST00000119523 2801 ntTSL 5 BASIC18.78■□□□□ 0.6
Rnf220Q6PDX6 Prmt3-201ENSMUST00000032715 2507 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Rnf220Q6PDX6 Nsmf-206ENSMUST00000114388 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
Rnf220Q6PDX6 Cpne2-201ENSMUST00000048653 2342 ntAPPRIS P2 TSL 1 (best) BASIC18.78■□□□□ 0.6
Rnf220Q6PDX6 Kirrel-201ENSMUST00000041732 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
Rnf220Q6PDX6 Gm12524-201ENSMUST00000143109 1583 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Rnf220Q6PDX6 Mpnd-208ENSMUST00000159996 1444 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
Rnf220Q6PDX6 Eva1b-202ENSMUST00000106150 1144 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Rnf220Q6PDX6 Dusp22-201ENSMUST00000091672 1161 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
Rnf220Q6PDX6 A830010M20Rik-202ENSMUST00000094541 1134 ntTSL 5 BASIC18.78■□□□□ 0.6
Rnf220Q6PDX6 Map7d2-203ENSMUST00000112471 3670 ntAPPRIS P3 TSL 5 BASIC18.78■□□□□ 0.6
Rnf220Q6PDX6 Pigw-201ENSMUST00000067058 2675 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Rnf220Q6PDX6 Tmem86a-201ENSMUST00000010451 1831 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Rnf220Q6PDX6 Lhx6-205ENSMUST00000112967 3378 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Rnf220Q6PDX6 Panx2-203ENSMUST00000162424 3391 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Rnf220Q6PDX6 Jph1-201ENSMUST00000038382 4809 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Rnf220Q6PDX6 Zbtb7a-202ENSMUST00000117956 1863 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Rnf220Q6PDX6 Ccr10-201ENSMUST00000062759 1726 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Rnf220Q6PDX6 Ppp3cc-201ENSMUST00000078434 1970 ntAPPRIS P2 TSL 1 (best) BASIC18.77■□□□□ 0.6
Rnf220Q6PDX6 E4f1-205ENSMUST00000226941 2642 ntAPPRIS ALT2 BASIC18.77■□□□□ 0.6
Rnf220Q6PDX6 Armc10-202ENSMUST00000095495 2700 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
Rnf220Q6PDX6 Tbx2-201ENSMUST00000000095 3626 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Rnf220Q6PDX6 Smarcad1-201ENSMUST00000031984 5168 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Rnf220Q6PDX6 Tle3-211ENSMUST00000161689 2836 ntTSL 2 BASIC18.77■□□□□ 0.6
Rnf220Q6PDX6 Dbf4-201ENSMUST00000002368 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
Retrieved 100 of 76,532 protein–RNA pairs in 23.8 ms