Protein–RNA interactions for Protein: Q6P8W9

Hmgb4, High mobility group protein B4, mousemouse

Predictions only

Length 181 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb4Q6P8W9 D830025C05Rik-201ENSMUST00000059474 976 ntBASIC20.9■□□□□ 0.94
Hmgb4Q6P8W9 Rpusd3-201ENSMUST00000060634 1224 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
Hmgb4Q6P8W9 Ccdc61-201ENSMUST00000098780 2022 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Hmgb4Q6P8W9 Map2k2-202ENSMUST00000105331 1556 ntAPPRIS ALT1 TSL 1 (best) BASIC20.89■□□□□ 0.94
Hmgb4Q6P8W9 Pou3f3-201ENSMUST00000054883 7409 ntAPPRIS P1 BASIC20.89■□□□□ 0.93
Hmgb4Q6P8W9 Snapin-203ENSMUST00000149884 1928 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Hmgb4Q6P8W9 Gm14486-201ENSMUST00000144704 644 ntTSL 3 BASIC20.89■□□□□ 0.93
Hmgb4Q6P8W9 Gm37564-201ENSMUST00000195000 330 ntTSL 5 BASIC20.89■□□□□ 0.93
Hmgb4Q6P8W9 Gm43173-201ENSMUST00000202246 593 ntBASIC20.89■□□□□ 0.93
Hmgb4Q6P8W9 Maf1-201ENSMUST00000023212 1686 ntAPPRIS P2 TSL 1 (best) BASIC20.89■□□□□ 0.93
Hmgb4Q6P8W9 Msantd3-203ENSMUST00000107704 1597 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Hmgb4Q6P8W9 Krt79-201ENSMUST00000023799 2097 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Hmgb4Q6P8W9 Bhlhe23-201ENSMUST00000108878 2520 ntAPPRIS P1 BASIC20.88■□□□□ 0.93
Hmgb4Q6P8W9 AC123857.1-201ENSMUST00000181053 2312 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
Hmgb4Q6P8W9 Rab43-203ENSMUST00000078647 4605 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Hmgb4Q6P8W9 AC164883.3-201ENSMUST00000227396 1774 ntBASIC20.88■□□□□ 0.93
Hmgb4Q6P8W9 Shox2-201ENSMUST00000029422 3079 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Hmgb4Q6P8W9 Fbxo2-201ENSMUST00000047951 1288 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Hmgb4Q6P8W9 Krtap5-4-201ENSMUST00000061403 1046 ntAPPRIS P1 BASIC20.88■□□□□ 0.93
Hmgb4Q6P8W9 Gm10612-201ENSMUST00000162198 1681 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
Hmgb4Q6P8W9 1110004F10Rik-201ENSMUST00000032899 1479 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Hmgb4Q6P8W9 Barhl1-203ENSMUST00000113849 2102 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Hmgb4Q6P8W9 Man1a-203ENSMUST00000105470 2847 ntAPPRIS P1 TSL 5 BASIC20.87■□□□□ 0.93
Hmgb4Q6P8W9 Msx3-202ENSMUST00000172775 2070 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Hmgb4Q6P8W9 Dnajb2-206ENSMUST00000187058 1732 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
Hmgb4Q6P8W9 Lrp3-202ENSMUST00000122409 4147 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
Hmgb4Q6P8W9 Gsr-201ENSMUST00000033992 2673 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Hmgb4Q6P8W9 Fbxw2-203ENSMUST00000113075 2260 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
Hmgb4Q6P8W9 Gm15867-201ENSMUST00000159407 388 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
Hmgb4Q6P8W9 D630036H23Rik-201ENSMUST00000171007 940 ntAPPRIS P1 BASIC20.87■□□□□ 0.93
Hmgb4Q6P8W9 Cacng7-201ENSMUST00000092891 2212 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Hmgb4Q6P8W9 Shisa6-201ENSMUST00000066679 1578 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Hmgb4Q6P8W9 Oaf-201ENSMUST00000034512 2526 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Hmgb4Q6P8W9 Prkar2b-201ENSMUST00000003079 1657 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Hmgb4Q6P8W9 Lsm14a-201ENSMUST00000085585 2944 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Hmgb4Q6P8W9 Snx21-204ENSMUST00000172577 1825 ntTSL 2 BASIC20.86■□□□□ 0.93
Hmgb4Q6P8W9 Wdfy1-202ENSMUST00000113510 704 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
Hmgb4Q6P8W9 Wdfy1-203ENSMUST00000113511 704 ntTSL 5 BASIC20.86■□□□□ 0.93
Hmgb4Q6P8W9 Jtb-202ENSMUST00000119304 878 ntTSL 3 BASIC20.86■□□□□ 0.93
Hmgb4Q6P8W9 Wdfy1-201ENSMUST00000048820 717 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
Hmgb4Q6P8W9 Fam193a-202ENSMUST00000180376 5536 ntAPPRIS P5 TSL 5 BASIC20.86■□□□□ 0.93
Hmgb4Q6P8W9 Rdh14-201ENSMUST00000020947 1480 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Hmgb4Q6P8W9 Dennd6a-202ENSMUST00000203874 2677 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
Hmgb4Q6P8W9 Kdelr3-201ENSMUST00000010974 1414 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Hmgb4Q6P8W9 Trp53rka-201ENSMUST00000039007 1880 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Hmgb4Q6P8W9 Dpf1-201ENSMUST00000049977 2309 ntAPPRIS P2 TSL 1 (best) BASIC20.86■□□□□ 0.93
Hmgb4Q6P8W9 Hoxa2-201ENSMUST00000014848 1775 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Hmgb4Q6P8W9 Gse1-203ENSMUST00000120493 4610 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
Hmgb4Q6P8W9 Hras-201ENSMUST00000026572 2828 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Hmgb4Q6P8W9 Nrl-203ENSMUST00000178694 1928 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Hmgb4Q6P8W9 Gm7160-202ENSMUST00000188519 1027 ntBASIC20.85■□□□□ 0.93
Hmgb4Q6P8W9 Hyi-201ENSMUST00000006562 910 ntAPPRIS P1 TSL 5 BASIC20.85■□□□□ 0.93
Hmgb4Q6P8W9 Phc2-202ENSMUST00000106079 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
Hmgb4Q6P8W9 Socs2-201ENSMUST00000020215 2222 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Hmgb4Q6P8W9 Map2k1-201ENSMUST00000005066 2436 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Hmgb4Q6P8W9 Gm6085-201ENSMUST00000182774 1470 ntBASIC20.84■□□□□ 0.93
Hmgb4Q6P8W9 Gsc-201ENSMUST00000021513 1268 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Hmgb4Q6P8W9 Gm9922-201ENSMUST00000066461 435 ntAPPRIS P1 BASIC20.84■□□□□ 0.93
Hmgb4Q6P8W9 Cav2-201ENSMUST00000000058 2733 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Hmgb4Q6P8W9 Gm5577-201ENSMUST00000134600 1434 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
Hmgb4Q6P8W9 Pla2g12a-201ENSMUST00000029629 1561 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Hmgb4Q6P8W9 Ksr1-201ENSMUST00000018478 5495 ntAPPRIS P1 TSL 5 BASIC20.84■□□□□ 0.93
Hmgb4Q6P8W9 D830036C21Rik-202ENSMUST00000208263 1548 ntBASIC20.83■□□□□ 0.93
Hmgb4Q6P8W9 Cops7a-201ENSMUST00000032220 1817 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
Hmgb4Q6P8W9 March11-201ENSMUST00000126304 2146 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.93
Hmgb4Q6P8W9 Galr2-201ENSMUST00000055872 1940 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
Hmgb4Q6P8W9 Prodh-206ENSMUST00000139861 677 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
Hmgb4Q6P8W9 Gm44731-201ENSMUST00000203086 542 ntTSL 3 BASIC20.83■□□□□ 0.93
Hmgb4Q6P8W9 Dtd2-202ENSMUST00000085404 1012 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
Hmgb4Q6P8W9 Ypel1-202ENSMUST00000090199 631 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
Hmgb4Q6P8W9 Bfsp1-202ENSMUST00000099296 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.92
Hmgb4Q6P8W9 Magi3-202ENSMUST00000121198 5912 ntAPPRIS ALT2 TSL 5 BASIC20.83■□□□□ 0.92
Hmgb4Q6P8W9 Ell3-201ENSMUST00000028679 2115 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
Hmgb4Q6P8W9 Agap2-202ENSMUST00000217941 5573 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.92
Hmgb4Q6P8W9 Olfm1-204ENSMUST00000113920 2513 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
Hmgb4Q6P8W9 Rtn4rl2-201ENSMUST00000054514 1263 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Hmgb4Q6P8W9 Slc25a41-201ENSMUST00000058661 1225 ntAPPRIS P3 TSL 1 (best) BASIC20.82■□□□□ 0.92
Hmgb4Q6P8W9 Krt1-201ENSMUST00000023790 2445 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Hmgb4Q6P8W9 Puf60-202ENSMUST00000100527 1878 ntAPPRIS P4 TSL 1 (best) BASIC20.81■□□□□ 0.92
Hmgb4Q6P8W9 Spint1-201ENSMUST00000028783 2273 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Hmgb4Q6P8W9 Cdan1-201ENSMUST00000110700 5996 ntAPPRIS ALT2 TSL 5 BASIC20.81■□□□□ 0.92
Hmgb4Q6P8W9 Tmub1-202ENSMUST00000115033 1598 ntAPPRIS P1 TSL 5 BASIC20.81■□□□□ 0.92
Hmgb4Q6P8W9 9130213A22Rik-201ENSMUST00000180487 1581 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Hmgb4Q6P8W9 Slc26a10-201ENSMUST00000095270 2215 ntAPPRIS P2 TSL 5 BASIC20.81■□□□□ 0.92
Hmgb4Q6P8W9 Hsf1-205ENSMUST00000227478 2084 ntAPPRIS P1 BASIC20.81■□□□□ 0.92
Hmgb4Q6P8W9 Ltb4r2-201ENSMUST00000044554 1439 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Hmgb4Q6P8W9 Dusp26-201ENSMUST00000036631 1938 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Hmgb4Q6P8W9 Prcd-201ENSMUST00000106381 724 ntTSL 3 BASIC20.81■□□□□ 0.92
Hmgb4Q6P8W9 Fbxl21-202ENSMUST00000121095 798 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
Hmgb4Q6P8W9 E130218I03Rik-201ENSMUST00000122952 943 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Hmgb4Q6P8W9 Gm15908-201ENSMUST00000154345 1091 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
Hmgb4Q6P8W9 Ly6h-206ENSMUST00000156032 752 ntAPPRIS P3 TSL 3 BASIC20.81■□□□□ 0.92
Hmgb4Q6P8W9 Gm5297-201ENSMUST00000198555 1171 ntBASIC20.81■□□□□ 0.92
Hmgb4Q6P8W9 Bax-205ENSMUST00000211365 801 ntTSL 3 BASIC20.81■□□□□ 0.92
Hmgb4Q6P8W9 Ly6h-201ENSMUST00000023241 906 ntAPPRIS ALT1 TSL 2 BASIC20.81■□□□□ 0.92
Hmgb4Q6P8W9 Gm5874-201ENSMUST00000096101 508 ntBASIC20.81■□□□□ 0.92
Hmgb4Q6P8W9 Rell2-212ENSMUST00000177058 1762 ntAPPRIS P1 TSL 5 BASIC20.81■□□□□ 0.92
Hmgb4Q6P8W9 Camk2b-201ENSMUST00000002817 1872 ntTSL 5 BASIC20.81■□□□□ 0.92
Hmgb4Q6P8W9 Faap24-201ENSMUST00000032704 1857 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Hmgb4Q6P8W9 Cers5-201ENSMUST00000023762 2096 ntAPPRIS P2 TSL 1 (best) BASIC20.81■□□□□ 0.92
Retrieved 100 of 76,532 protein–RNA pairs in 14.7 ms