Protein–RNA interactions for Protein: Q6P7W2

Shkbp1, SH3KBP1-binding protein 1, mousemouse

Predictions only

Length 704 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shkbp1Q6P7W2 Spaca1-202ENSMUST00000084734 1149 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
Shkbp1Q6P7W2 Uap1-202ENSMUST00000111350 2311 ntAPPRIS ALT1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Shkbp1Q6P7W2 Stbd1-201ENSMUST00000050952 1985 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Shkbp1Q6P7W2 Fam189a2-201ENSMUST00000096164 2547 ntAPPRIS P1 TSL 5 BASIC21.01■□□□□ 0.95
Shkbp1Q6P7W2 Lsm12-201ENSMUST00000021297 2256 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Shkbp1Q6P7W2 1700030C10Rik-201ENSMUST00000110971 1471 ntBASIC21.01■□□□□ 0.95
Shkbp1Q6P7W2 Iars2-202ENSMUST00000110974 2431 ntTSL 1 (best) BASIC21■□□□□ 0.95
Shkbp1Q6P7W2 Gdf15-202ENSMUST00000110103 1380 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Shkbp1Q6P7W2 Tmem178-201ENSMUST00000025092 1696 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Shkbp1Q6P7W2 Gm10033-202ENSMUST00000211874 928 ntBASIC21■□□□□ 0.95
Shkbp1Q6P7W2 E030030I06Rik-201ENSMUST00000069372 876 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
Shkbp1Q6P7W2 Fance-202ENSMUST00000114801 1751 ntTSL 1 (best) BASIC21■□□□□ 0.95
Shkbp1Q6P7W2 Stac3-201ENSMUST00000035839 1790 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Shkbp1Q6P7W2 Sh3gl1-201ENSMUST00000003268 2072 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Shkbp1Q6P7W2 Ube2q1-201ENSMUST00000038356 3077 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Shkbp1Q6P7W2 Gm8773-201ENSMUST00000101627 1268 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Shkbp1Q6P7W2 Zfp125-203ENSMUST00000208744 928 ntTSL 5 BASIC20.99■□□□□ 0.95
Shkbp1Q6P7W2 Gm36210-201ENSMUST00000210663 1279 ntAPPRIS P1 TSL 5 BASIC20.99■□□□□ 0.95
Shkbp1Q6P7W2 Sdf2l1-201ENSMUST00000023453 1108 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Shkbp1Q6P7W2 Serbp1-207ENSMUST00000203436 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
Shkbp1Q6P7W2 Has1-201ENSMUST00000003762 2090 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Shkbp1Q6P7W2 Acot5-202ENSMUST00000072505 1401 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
Shkbp1Q6P7W2 AC137127.1-201ENSMUST00000213466 1078 ntBASIC20.98■□□□□ 0.95
Shkbp1Q6P7W2 AC133650.2-201ENSMUST00000217036 607 ntTSL 3 BASIC20.98■□□□□ 0.95
Shkbp1Q6P7W2 Tmem147-201ENSMUST00000006478 870 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Shkbp1Q6P7W2 Snap91-203ENSMUST00000074501 2577 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
Shkbp1Q6P7W2 AA543186-201ENSMUST00000180841 1696 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
Shkbp1Q6P7W2 Gpr160-202ENSMUST00000108258 2139 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Shkbp1Q6P7W2 Grtp1-207ENSMUST00000211128 1416 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
Shkbp1Q6P7W2 Akt1-201ENSMUST00000001780 2690 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Shkbp1Q6P7W2 Gm18671-201ENSMUST00000214826 683 ntBASIC20.97■□□□□ 0.95
Shkbp1Q6P7W2 Chrac1-201ENSMUST00000089765 871 ntAPPRIS P2 TSL 1 (best) BASIC20.97■□□□□ 0.95
Shkbp1Q6P7W2 Cnp-201ENSMUST00000103120 2357 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Shkbp1Q6P7W2 Rbm38-201ENSMUST00000029014 1768 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Shkbp1Q6P7W2 Spint1-201ENSMUST00000028783 2273 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Shkbp1Q6P7W2 Nkpd1-203ENSMUST00000214205 2309 ntAPPRIS ALT2 TSL 5 BASIC20.96■□□□□ 0.95
Shkbp1Q6P7W2 Ndufaf1-201ENSMUST00000028768 1451 ntAPPRIS P2 TSL 1 (best) BASIC20.96■□□□□ 0.95
Shkbp1Q6P7W2 Slc35b3-209ENSMUST00000225432 2216 ntAPPRIS P3 BASIC20.96■□□□□ 0.95
Shkbp1Q6P7W2 Bspry-201ENSMUST00000030088 1757 ntAPPRIS P2 TSL 1 (best) BASIC20.96■□□□□ 0.95
Shkbp1Q6P7W2 Emc6-202ENSMUST00000108480 563 ntAPPRIS P1 TSL 2 BASIC20.96■□□□□ 0.95
Shkbp1Q6P7W2 Gm16076-201ENSMUST00000140116 480 ntTSL 3 BASIC20.96■□□□□ 0.95
Shkbp1Q6P7W2 Gm37179-201ENSMUST00000194862 823 ntBASIC20.96■□□□□ 0.95
Shkbp1Q6P7W2 Cdc42bpg-201ENSMUST00000025681 5995 ntAPPRIS P1 TSL 5 BASIC20.96■□□□□ 0.95
Shkbp1Q6P7W2 Mbnl3-203ENSMUST00000114876 2243 ntAPPRIS P2 TSL 1 (best) BASIC20.96■□□□□ 0.95
Shkbp1Q6P7W2 Lrrc1-205ENSMUST00000183873 3121 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.95
Shkbp1Q6P7W2 Hnrnpab-203ENSMUST00000109103 1437 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.95
Shkbp1Q6P7W2 Nfix-201ENSMUST00000076715 1403 ntTSL 1 (best) BASIC20.95■□□□□ 0.95
Shkbp1Q6P7W2 Rfx5-205ENSMUST00000107260 2355 ntAPPRIS P1 TSL 5 BASIC20.95■□□□□ 0.94
Shkbp1Q6P7W2 Ppp1r12c-201ENSMUST00000013886 2983 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Shkbp1Q6P7W2 Aplf-201ENSMUST00000032130 1889 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Shkbp1Q6P7W2 B230217C12Rik-201ENSMUST00000054783 1189 ntAPPRIS P1 TSL 5 BASIC20.95■□□□□ 0.94
Shkbp1Q6P7W2 Hist1h2ag-201ENSMUST00000091741 485 ntAPPRIS P1 BASIC20.95■□□□□ 0.94
Shkbp1Q6P7W2 Ugdh-201ENSMUST00000031103 2550 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Shkbp1Q6P7W2 Ndufaf1-202ENSMUST00000110801 1478 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
Shkbp1Q6P7W2 Slc17a7-201ENSMUST00000085374 2915 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Shkbp1Q6P7W2 Gas5-217ENSMUST00000161005 430 ntTSL 5 BASIC20.94■□□□□ 0.94
Shkbp1Q6P7W2 Hgfac-206ENSMUST00000202573 434 ntTSL 5 BASIC20.94■□□□□ 0.94
Shkbp1Q6P7W2 Tpst2-202ENSMUST00000071455 1741 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Shkbp1Q6P7W2 Moap1-201ENSMUST00000173760 1312 ntAPPRIS P1 TSL 2 BASIC20.94■□□□□ 0.94
Shkbp1Q6P7W2 Actr5-201ENSMUST00000045644 2402 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Shkbp1Q6P7W2 6330403L08Rik-202ENSMUST00000187923 5522 ntBASIC20.94■□□□□ 0.94
Shkbp1Q6P7W2 Rnf19b-206ENSMUST00000168461 2532 ntAPPRIS P2 TSL 5 BASIC20.94■□□□□ 0.94
Shkbp1Q6P7W2 Rrad-201ENSMUST00000034351 1577 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Shkbp1Q6P7W2 Htr7-201ENSMUST00000099505 1606 ntTSL 5 BASIC20.93■□□□□ 0.94
Shkbp1Q6P7W2 Pitx2-202ENSMUST00000042587 2271 ntAPPRIS ALT1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Shkbp1Q6P7W2 Sarnp-201ENSMUST00000105230 918 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Shkbp1Q6P7W2 Wdr4-203ENSMUST00000167419 813 ntTSL 3 BASIC20.93■□□□□ 0.94
Shkbp1Q6P7W2 AV356131-201ENSMUST00000206201 750 ntBASIC20.93■□□□□ 0.94
Shkbp1Q6P7W2 Dtnbp1-208ENSMUST00000222805 1231 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
Shkbp1Q6P7W2 Cox18-202ENSMUST00000118816 1307 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
Shkbp1Q6P7W2 Slc10a3-201ENSMUST00000037967 2023 ntAPPRIS P2 TSL 1 (best) BASIC20.93■□□□□ 0.94
Shkbp1Q6P7W2 Ltk-206ENSMUST00000182203 2232 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
Shkbp1Q6P7W2 Mfsd4b2-201ENSMUST00000045526 2285 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Shkbp1Q6P7W2 Impdh1-201ENSMUST00000078155 2437 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Shkbp1Q6P7W2 Dalrd3-201ENSMUST00000019183 1746 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Shkbp1Q6P7W2 Cdkn1c-201ENSMUST00000037287 1901 ntAPPRIS P3 TSL 1 (best) BASIC20.92■□□□□ 0.94
Shkbp1Q6P7W2 Pom121-201ENSMUST00000111171 5580 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Shkbp1Q6P7W2 Adamtsl5-202ENSMUST00000105352 989 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
Shkbp1Q6P7W2 Vax2os-202ENSMUST00000150233 595 ntTSL 3 BASIC20.92■□□□□ 0.94
Shkbp1Q6P7W2 Gfra4-201ENSMUST00000028787 909 ntAPPRIS P3 TSL 1 (best) BASIC20.92■□□□□ 0.94
Shkbp1Q6P7W2 Fbxw2-202ENSMUST00000091020 1838 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
Shkbp1Q6P7W2 Shisa5-202ENSMUST00000112059 1910 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
Shkbp1Q6P7W2 Atg3-201ENSMUST00000023343 2057 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Shkbp1Q6P7W2 Fbxl3-204ENSMUST00000132004 2534 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
Shkbp1Q6P7W2 Cirbp-202ENSMUST00000105365 1321 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Shkbp1Q6P7W2 Hpca-204ENSMUST00000116444 1847 ntAPPRIS P1 TSL 5 BASIC20.91■□□□□ 0.94
Shkbp1Q6P7W2 Rell2-204ENSMUST00000163591 1057 ntTSL 5 BASIC20.91■□□□□ 0.94
Shkbp1Q6P7W2 Mpig6b-202ENSMUST00000174190 729 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Shkbp1Q6P7W2 Gm9780-201ENSMUST00000184272 350 ntTSL 2 BASIC20.91■□□□□ 0.94
Shkbp1Q6P7W2 AV026068-204ENSMUST00000186214 633 ntTSL 2 BASIC20.91■□□□□ 0.94
Shkbp1Q6P7W2 Gm42778-201ENSMUST00000199644 553 ntBASIC20.91■□□□□ 0.94
Shkbp1Q6P7W2 Ctnnd2-201ENSMUST00000081728 5944 ntAPPRIS P2 TSL 1 (best) BASIC20.91■□□□□ 0.94
Shkbp1Q6P7W2 Trim47-201ENSMUST00000021120 2204 ntAPPRIS P4 TSL 1 (best) BASIC20.9■□□□□ 0.94
Shkbp1Q6P7W2 Fip1l1-202ENSMUST00000113534 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
Shkbp1Q6P7W2 Gyg-201ENSMUST00000118015 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
Shkbp1Q6P7W2 Cdx1-201ENSMUST00000025521 1750 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Shkbp1Q6P7W2 Stmn4-203ENSMUST00000120229 1281 ntTSL 2 BASIC20.9■□□□□ 0.94
Shkbp1Q6P7W2 Gm9970-201ENSMUST00000068997 558 ntAPPRIS P1 BASIC20.9■□□□□ 0.94
Shkbp1Q6P7W2 Fcrlb-201ENSMUST00000094337 1284 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Shkbp1Q6P7W2 Aktip-202ENSMUST00000120213 2200 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Retrieved 100 of 76,532 protein–RNA pairs in 33.5 ms