Protein–RNA interactions for Protein: Q62318

Trim28, Transcription intermediary factor 1-beta, mousemouse

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim28Q62318 Sh3bp1-204ENSMUST00000109698 1923 ntTSL 1 (best) BASIC26.4■■□□□ 1.82
Trim28Q62318 Dda1-202ENSMUST00000124745 1933 ntAPPRIS P1 TSL 1 (best) BASIC26.4■■□□□ 1.82
Trim28Q62318 Rnf39-202ENSMUST00000173072 631 ntTSL 2 BASIC26.4■■□□□ 1.82
Trim28Q62318 Sumo3-209ENSMUST00000174113 512 ntAPPRIS P1 TSL 2 BASIC26.4■■□□□ 1.82
Trim28Q62318 Krtap5-3-201ENSMUST00000084414 1074 ntAPPRIS ALT2 TSL 5 BASIC26.4■■□□□ 1.82
Trim28Q62318 Fgfrl1-202ENSMUST00000112560 2318 ntTSL 1 (best) BASIC26.4■■□□□ 1.82
Trim28Q62318 Ankrd9-203ENSMUST00000135131 1563 ntAPPRIS P2 TSL 1 (best) BASIC26.39■■□□□ 1.82
Trim28Q62318 Stmn4-202ENSMUST00000118426 1281 ntTSL 1 (best) BASIC26.39■■□□□ 1.82
Trim28Q62318 Gm11650-201ENSMUST00000141271 1145 ntTSL 1 (best) BASIC26.39■■□□□ 1.82
Trim28Q62318 Jsrp1-203ENSMUST00000181039 1108 ntAPPRIS P2 TSL 1 (best) BASIC26.39■■□□□ 1.82
Trim28Q62318 Gm27027-201ENSMUST00000183110 547 ntAPPRIS P1 TSL 3 BASIC26.39■■□□□ 1.82
Trim28Q62318 Zfp428-201ENSMUST00000071361 1182 ntAPPRIS P3 TSL 1 (best) BASIC26.39■■□□□ 1.82
Trim28Q62318 Vamp5-201ENSMUST00000074231 553 ntAPPRIS P1 TSL 1 (best) BASIC26.39■■□□□ 1.82
Trim28Q62318 Gm6899-201ENSMUST00000089614 622 ntAPPRIS P1 BASIC26.39■■□□□ 1.82
Trim28Q62318 Smox-202ENSMUST00000110179 1320 ntTSL 1 (best) BASIC26.39■■□□□ 1.81
Trim28Q62318 Spsb3-204ENSMUST00000119829 1955 ntAPPRIS ALT2 TSL 2 BASIC26.38■■□□□ 1.81
Trim28Q62318 Fam49b-202ENSMUST00000164532 1770 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.81
Trim28Q62318 Whrn-204ENSMUST00000095037 2419 ntTSL 1 (best) BASIC26.38■■□□□ 1.81
Trim28Q62318 Ubl3-202ENSMUST00000164904 2001 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.81
Trim28Q62318 Morf4l1-211ENSMUST00000191189 1223 ntTSL 5 BASIC26.38■■□□□ 1.81
Trim28Q62318 Ugdh-201ENSMUST00000031103 2550 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.81
Trim28Q62318 Spock1-204ENSMUST00000186271 2005 ntAPPRIS P3 TSL 1 (best) BASIC26.38■■□□□ 1.81
Trim28Q62318 Agps-202ENSMUST00000111952 2589 ntTSL 2 BASIC26.37■■□□□ 1.81
Trim28Q62318 Prdm13-202ENSMUST00000095141 3173 ntAPPRIS P2 TSL 2 BASIC26.37■■□□□ 1.81
Trim28Q62318 Gm7102-201ENSMUST00000180168 1624 ntAPPRIS P1 BASIC26.37■■□□□ 1.81
Trim28Q62318 Mrgbp-206ENSMUST00000169630 1192 ntAPPRIS P1 TSL 1 (best) BASIC26.37■■□□□ 1.81
Trim28Q62318 Gamt-201ENSMUST00000020359 979 ntTSL 1 (best) BASIC26.37■■□□□ 1.81
Trim28Q62318 AC122828.1-201ENSMUST00000220785 489 ntTSL 3 BASIC26.37■■□□□ 1.81
Trim28Q62318 Tmem171-201ENSMUST00000064347 1161 ntAPPRIS P1 TSL 1 (best) BASIC26.37■■□□□ 1.81
Trim28Q62318 Snx21-206ENSMUST00000174070 1446 ntTSL 5 BASIC26.37■■□□□ 1.81
Trim28Q62318 Cdkn1c-201ENSMUST00000037287 1901 ntAPPRIS P3 TSL 1 (best) BASIC26.37■■□□□ 1.81
Trim28Q62318 Polr2m-201ENSMUST00000034720 2200 ntAPPRIS P1 TSL 1 (best) BASIC26.37■■□□□ 1.81
Trim28Q62318 Phf14-203ENSMUST00000115511 3336 ntAPPRIS P1 TSL 5 BASIC26.36■■□□□ 1.81
Trim28Q62318 Mms22l-205ENSMUST00000138567 1350 ntTSL 2 BASIC26.36■■□□□ 1.81
Trim28Q62318 Stac3-201ENSMUST00000035839 1790 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.81
Trim28Q62318 Ihh-201ENSMUST00000164097 2468 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.81
Trim28Q62318 Hck-202ENSMUST00000109799 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC26.36■■□□□ 1.81
Trim28Q62318 Hck-203ENSMUST00000189688 2090 ntAPPRIS ALT2 TSL 1 (best) BASIC26.36■■□□□ 1.81
Trim28Q62318 Hck-201ENSMUST00000003370 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC26.36■■□□□ 1.81
Trim28Q62318 Gm5874-201ENSMUST00000096101 508 ntBASIC26.36■■□□□ 1.81
Trim28Q62318 Cep78-201ENSMUST00000047704 2548 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
Trim28Q62318 Hey1-201ENSMUST00000042412 2423 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
Trim28Q62318 Gm20421-201ENSMUST00000153344 672 ntTSL 3 BASIC26.35■■□□□ 1.81
Trim28Q62318 Csnk1a1-207ENSMUST00000166990 1860 ntTSL 5 BASIC26.35■■□□□ 1.81
Trim28Q62318 Socs2-214ENSMUST00000172070 2153 ntAPPRIS P1 TSL 2 BASIC26.35■■□□□ 1.81
Trim28Q62318 Mrpl40-201ENSMUST00000023391 1185 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
Trim28Q62318 Fabp3-201ENSMUST00000070532 823 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
Trim28Q62318 1700030C10Rik-201ENSMUST00000110971 1471 ntBASIC26.35■■□□□ 1.81
Trim28Q62318 Fezf2-203ENSMUST00000224714 2429 ntAPPRIS P1 BASIC26.35■■□□□ 1.81
Trim28Q62318 Slc9a7-201ENSMUST00000072451 2512 ntAPPRIS P2 TSL 1 (best) BASIC26.34■■□□□ 1.81
Trim28Q62318 Slc35b2-207ENSMUST00000226086 850 ntBASIC26.34■■□□□ 1.81
Trim28Q62318 Nabp2-201ENSMUST00000026439 1130 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
Trim28Q62318 Gpr3-201ENSMUST00000052090 1116 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
Trim28Q62318 Ypel1-202ENSMUST00000090199 631 ntTSL 1 (best) BASIC26.34■■□□□ 1.81
Trim28Q62318 Gm10493-201ENSMUST00000097270 612 ntBASIC26.34■■□□□ 1.81
Trim28Q62318 Moap1-201ENSMUST00000173760 1312 ntAPPRIS P1 TSL 2 BASIC26.34■■□□□ 1.81
Trim28Q62318 Dhps-201ENSMUST00000078665 1333 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
Trim28Q62318 Kcnip1-201ENSMUST00000065970 1749 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
Trim28Q62318 2310061I04Rik-203ENSMUST00000148482 1193 ntTSL 1 (best) BASIC26.33■■□□□ 1.81
Trim28Q62318 Sirpa-209ENSMUST00000160276 876 ntTSL 1 (best) BASIC26.33■■□□□ 1.81
Trim28Q62318 1700012B09Rik-204ENSMUST00000191047 654 ntAPPRIS ALT2 TSL 3 BASIC26.33■■□□□ 1.81
Trim28Q62318 Hgfac-206ENSMUST00000202573 434 ntTSL 5 BASIC26.33■■□□□ 1.81
Trim28Q62318 Krtap5-3-202ENSMUST00000187512 1652 ntAPPRIS P2 BASIC26.33■■□□□ 1.81
Trim28Q62318 Ung-201ENSMUST00000031587 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC26.33■■□□□ 1.8
Trim28Q62318 Dennd6a-202ENSMUST00000203874 2677 ntTSL 1 (best) BASIC26.32■■□□□ 1.8
Trim28Q62318 Pus1-203ENSMUST00000086643 1868 ntAPPRIS P4 TSL 1 (best) BASIC26.32■■□□□ 1.8
Trim28Q62318 Gm10129-202ENSMUST00000193100 1316 ntBASIC26.32■■□□□ 1.8
Trim28Q62318 Hdhd2-206ENSMUST00000145634 1585 ntAPPRIS P1 TSL 5 BASIC26.32■■□□□ 1.8
Trim28Q62318 Hoxd1-201ENSMUST00000047793 1862 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
Trim28Q62318 Anapc1-202ENSMUST00000110332 1214 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
Trim28Q62318 Gm11421-201ENSMUST00000122124 294 ntBASIC26.31■■□□□ 1.8
Trim28Q62318 Ets1-202ENSMUST00000050797 1976 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
Trim28Q62318 Ndufaf1-202ENSMUST00000110801 1478 ntAPPRIS ALT2 TSL 1 (best) BASIC26.3■■□□□ 1.8
Trim28Q62318 Wdsub1-202ENSMUST00000102751 1526 ntTSL 1 (best) BASIC26.3■■□□□ 1.8
Trim28Q62318 Cotl1-201ENSMUST00000034285 1596 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
Trim28Q62318 Atpaf1-203ENSMUST00000176047 2330 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
Trim28Q62318 Slc35b2-201ENSMUST00000041353 2326 ntTSL 1 (best) BASIC26.3■■□□□ 1.8
Trim28Q62318 Tspan17-202ENSMUST00000099503 822 ntAPPRIS ALT1 TSL 5 BASIC26.3■■□□□ 1.8
Trim28Q62318 Rasgrf2-206ENSMUST00000216219 2115 ntTSL 5 BASIC26.3■■□□□ 1.8
Trim28Q62318 AC161052.2-201ENSMUST00000220969 1375 ntTSL 5 BASIC26.3■■□□□ 1.8
Trim28Q62318 Cotl1-202ENSMUST00000168698 1520 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
Trim28Q62318 Pcgf6-201ENSMUST00000026032 2098 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
Trim28Q62318 Spry1-201ENSMUST00000038569 2481 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
Trim28Q62318 Cdkl3-202ENSMUST00000063321 2008 ntAPPRIS ALT2 TSL 1 (best) BASIC26.29■■□□□ 1.8
Trim28Q62318 Fam168b-201ENSMUST00000047534 5030 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
Trim28Q62318 Maf1-205ENSMUST00000160853 1651 ntAPPRIS P2 TSL 1 (best) BASIC26.28■■□□□ 1.8
Trim28Q62318 Dbf4-201ENSMUST00000002368 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC26.28■■□□□ 1.8
Trim28Q62318 Fdxacb1-203ENSMUST00000176335 1817 ntTSL 1 (best) BASIC26.28■■□□□ 1.8
Trim28Q62318 Bcl10-201ENSMUST00000029842 1949 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
Trim28Q62318 Otud5-204ENSMUST00000115667 2708 ntAPPRIS ALT2 TSL 5 BASIC26.28■■□□□ 1.8
Trim28Q62318 Hsf1-201ENSMUST00000072838 2018 ntTSL 1 (best) BASIC26.28■■□□□ 1.8
Trim28Q62318 4930444P10Rik-203ENSMUST00000151004 1001 ntAPPRIS P2 TSL 3 BASIC26.28■■□□□ 1.8
Trim28Q62318 Tmem147-201ENSMUST00000006478 870 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
Trim28Q62318 Homer3-206ENSMUST00000140212 2608 ntAPPRIS P3 TSL 1 (best) BASIC26.28■■□□□ 1.8
Trim28Q62318 Vapa-201ENSMUST00000024897 1640 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
Trim28Q62318 Tex264-202ENSMUST00000163441 1896 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
Trim28Q62318 Nipsnap2-201ENSMUST00000086046 2112 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
Trim28Q62318 Chrac1-202ENSMUST00000134353 538 ntAPPRIS ALT2 TSL 2 BASIC26.27■■□□□ 1.8
Trim28Q62318 Lmo1-202ENSMUST00000207178 912 ntAPPRIS ALT1 TSL 2 BASIC26.27■■□□□ 1.8
Trim28Q62318 Hpca-204ENSMUST00000116444 1847 ntAPPRIS P1 TSL 5 BASIC26.27■■□□□ 1.8
Retrieved 100 of 76,532 protein–RNA pairs in 473.9 ms