Protein–RNA interactions for Protein: Q61245

Col11a1, Collagen alpha-1(XI) chain, mousemouse

Predictions only

Length 1,804 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col11a1Q61245 2310034G01Rik-201ENSMUST00000189008 1373 ntAPPRIS P1 TSL 5 BASIC23■■□□□ 1.27
Col11a1Q61245 A930001C03Rik-204ENSMUST00000154407 1402 ntTSL 1 (best) BASIC23■■□□□ 1.27
Col11a1Q61245 Grb2-201ENSMUST00000021090 2709 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
Col11a1Q61245 Gpatch3-201ENSMUST00000030662 2004 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
Col11a1Q61245 Rhno1-202ENSMUST00000112151 1108 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
Col11a1Q61245 Tfg-202ENSMUST00000121554 716 ntAPPRIS ALT2 TSL 5 BASIC22.99■■□□□ 1.27
Col11a1Q61245 Cck-204ENSMUST00000216138 799 ntTSL 1 (best) BASIC22.99■■□□□ 1.27
Col11a1Q61245 Nsfl1c-202ENSMUST00000089140 1486 ntAPPRIS P3 TSL 5 BASIC22.99■■□□□ 1.27
Col11a1Q61245 Ankrd9-201ENSMUST00000043459 1706 ntAPPRIS P2 TSL 1 (best) BASIC22.99■■□□□ 1.27
Col11a1Q61245 Dsg2-203ENSMUST00000121837 953 ntTSL 1 (best) BASIC22.98■■□□□ 1.27
Col11a1Q61245 Cmc1-201ENSMUST00000044220 1169 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
Col11a1Q61245 Fam3c-203ENSMUST00000163963 1617 ntTSL 1 (best) BASIC22.98■■□□□ 1.27
Col11a1Q61245 Wnt11-205ENSMUST00000167303 1792 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
Col11a1Q61245 Stac3-201ENSMUST00000035839 1790 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
Col11a1Q61245 Slc35a2-201ENSMUST00000096514 1757 ntTSL 5 BASIC22.98■■□□□ 1.27
Col11a1Q61245 Foxj3-209ENSMUST00000162267 1391 ntAPPRIS ALT2 TSL 1 (best) BASIC22.98■■□□□ 1.27
Col11a1Q61245 Moap1-201ENSMUST00000173760 1312 ntAPPRIS P1 TSL 2 BASIC22.98■■□□□ 1.27
Col11a1Q61245 Gm10252-201ENSMUST00000209541 832 ntBASIC22.98■■□□□ 1.27
Col11a1Q61245 Gsr-201ENSMUST00000033992 2673 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
Col11a1Q61245 Htatip2-202ENSMUST00000207895 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC22.97■■□□□ 1.27
Col11a1Q61245 Npm3-ps1-201ENSMUST00000119728 528 ntBASIC22.97■■□□□ 1.27
Col11a1Q61245 Arl6ip4-202ENSMUST00000122394 982 ntAPPRIS ALT2 TSL 5 BASIC22.97■■□□□ 1.27
Col11a1Q61245 Npm3-201ENSMUST00000070215 888 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
Col11a1Q61245 Chrna7-201ENSMUST00000032738 2078 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
Col11a1Q61245 Peli3-201ENSMUST00000025834 1971 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
Col11a1Q61245 Cd320-201ENSMUST00000002379 2209 ntAPPRIS P3 TSL 1 (best) BASIC22.97■■□□□ 1.27
Col11a1Q61245 Gm20760-201ENSMUST00000179197 648 ntBASIC22.96■■□□□ 1.27
Col11a1Q61245 Gnb5-206ENSMUST00000215875 2105 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
Col11a1Q61245 Bean1-202ENSMUST00000164076 2423 ntAPPRIS ALT2 TSL 1 (best) BASIC22.96■■□□□ 1.27
Col11a1Q61245 Gm12527-201ENSMUST00000117967 564 ntBASIC22.96■■□□□ 1.27
Col11a1Q61245 Gm39115-201ENSMUST00000211350 699 ntAPPRIS P1 BASIC22.96■■□□□ 1.27
Col11a1Q61245 Hoxa11os-201ENSMUST00000134512 1839 ntTSL 1 (best) BASIC22.95■■□□□ 1.27
Col11a1Q61245 Metrn-202ENSMUST00000165838 1363 ntAPPRIS P1 TSL 1 (best) BASIC22.95■■□□□ 1.26
Col11a1Q61245 Tecr-203ENSMUST00000165740 1120 ntTSL 1 (best) BASIC22.95■■□□□ 1.26
Col11a1Q61245 Mrps33-201ENSMUST00000031978 1107 ntAPPRIS P1 TSL 1 (best) BASIC22.95■■□□□ 1.26
Col11a1Q61245 Med30-201ENSMUST00000037115 1007 ntAPPRIS P1 TSL 1 (best) BASIC22.95■■□□□ 1.26
Col11a1Q61245 Memo1-201ENSMUST00000078459 1513 ntAPPRIS P1 TSL 1 (best) BASIC22.95■■□□□ 1.26
Col11a1Q61245 Syndig1l-201ENSMUST00000095550 2524 ntAPPRIS P1 TSL 1 (best) BASIC22.94■■□□□ 1.26
Col11a1Q61245 Cdkn2c-202ENSMUST00000097921 2471 ntAPPRIS P1 TSL 1 (best) BASIC22.94■■□□□ 1.26
Col11a1Q61245 2410002F23Rik-201ENSMUST00000055858 1982 ntAPPRIS P2 TSL 1 (best) BASIC22.94■■□□□ 1.26
Col11a1Q61245 Zfp639-202ENSMUST00000191783 1988 ntAPPRIS P1 TSL 1 (best) BASIC22.94■■□□□ 1.26
Col11a1Q61245 Ern1-203ENSMUST00000106800 654 ntTSL 3 BASIC22.94■■□□□ 1.26
Col11a1Q61245 Mir7071-201ENSMUST00000184847 69 ntBASIC22.94■■□□□ 1.26
Col11a1Q61245 Kcmf1-206ENSMUST00000206378 544 ntTSL 5 BASIC22.94■■□□□ 1.26
Col11a1Q61245 Dcun1d5-202ENSMUST00000215683 2421 ntAPPRIS P1 TSL 1 (best) BASIC22.94■■□□□ 1.26
Col11a1Q61245 B630019K06Rik-201ENSMUST00000064196 2583 ntAPPRIS P1 BASIC22.93■■□□□ 1.26
Col11a1Q61245 Sept4-206ENSMUST00000122067 1303 ntTSL 1 (best) BASIC22.93■■□□□ 1.26
Col11a1Q61245 Klhl25-203ENSMUST00000205612 1343 ntTSL 1 (best) BASIC22.93■■□□□ 1.26
Col11a1Q61245 Atp5a1-202ENSMUST00000114748 2674 ntTSL 1 (best) BASIC22.93■■□□□ 1.26
Col11a1Q61245 Gm10571-201ENSMUST00000097869 1638 ntBASIC22.92■■□□□ 1.26
Col11a1Q61245 Akt1s1-204ENSMUST00000107885 1812 ntAPPRIS ALT2 TSL 1 (best) BASIC22.92■■□□□ 1.26
Col11a1Q61245 Eif2ak4-207ENSMUST00000110877 2134 ntTSL 1 (best) BASIC22.92■■□□□ 1.26
Col11a1Q61245 Akr1a1-201ENSMUST00000030455 1420 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
Col11a1Q61245 Gm10830-201ENSMUST00000186379 636 ntTSL 5 BASIC22.92■■□□□ 1.26
Col11a1Q61245 Sdccag3-204ENSMUST00000114102 2193 ntAPPRIS P3 TSL 1 (best) BASIC22.91■■□□□ 1.26
Col11a1Q61245 Zfp637-201ENSMUST00000112858 650 ntTSL 2 BASIC22.91■■□□□ 1.26
Col11a1Q61245 Zfp637-203ENSMUST00000112860 1231 ntTSL 1 (best) BASIC22.91■■□□□ 1.26
Col11a1Q61245 1700101I19Rik-202ENSMUST00000186712 510 ntBASIC22.91■■□□□ 1.26
Col11a1Q61245 Prr3-201ENSMUST00000055454 2727 ntAPPRIS P3 TSL 1 (best) BASIC22.9■■□□□ 1.26
Col11a1Q61245 Tusc3-203ENSMUST00000209440 1535 ntAPPRIS P1 TSL 1 (best) BASIC22.9■■□□□ 1.26
Col11a1Q61245 Eda-204ENSMUST00000113777 1056 ntTSL 5 BASIC22.89■■□□□ 1.26
Col11a1Q61245 Mir6236-201ENSMUST00000184437 123 ntBASIC22.89■■□□□ 1.26
Col11a1Q61245 Eda-201ENSMUST00000071453 1152 ntTSL 1 (best) BASIC22.89■■□□□ 1.26
Col11a1Q61245 Gimap1-201ENSMUST00000054368 1493 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.26
Col11a1Q61245 Prdm11-205ENSMUST00000178666 1870 ntTSL 5 BASIC22.89■■□□□ 1.25
Col11a1Q61245 Hnrnpa3-204ENSMUST00000111964 1654 ntAPPRIS P3 TSL 1 (best) BASIC22.89■■□□□ 1.25
Col11a1Q61245 Gm3264-202ENSMUST00000166776 882 ntAPPRIS ALT2 TSL 5 BASIC22.89■■□□□ 1.25
Col11a1Q61245 Snrpd3-203ENSMUST00000220229 442 ntTSL 3 BASIC22.89■■□□□ 1.25
Col11a1Q61245 Mef2a-203ENSMUST00000076325 2664 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.25
Col11a1Q61245 Smox-207ENSMUST00000110186 2170 ntTSL 1 (best) BASIC22.89■■□□□ 1.25
Col11a1Q61245 Nxph4-201ENSMUST00000095266 1675 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
Col11a1Q61245 Prr29-201ENSMUST00000009354 1112 ntTSL 1 (best) BASIC22.88■■□□□ 1.25
Col11a1Q61245 Ppp1cc-202ENSMUST00000102528 2384 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
Col11a1Q61245 Nisch-222ENSMUST00000172142 2780 ntAPPRIS ALT2 TSL 1 (best) BASIC22.88■■□□□ 1.25
Col11a1Q61245 Kazald1-202ENSMUST00000111948 1625 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
Col11a1Q61245 Fdx1l-201ENSMUST00000010348 812 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
Col11a1Q61245 Fxyd1-215ENSMUST00000206474 572 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
Col11a1Q61245 Rab28-203ENSMUST00000201422 1697 ntTSL 5 BASIC22.87■■□□□ 1.25
Col11a1Q61245 Ccsap-201ENSMUST00000034452 2390 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
Col11a1Q61245 2410004B18Rik-201ENSMUST00000039571 1547 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
Col11a1Q61245 Coro1a-209ENSMUST00000173108 1170 ntTSL 5 BASIC22.87■■□□□ 1.25
Col11a1Q61245 Fndc5-201ENSMUST00000102600 2763 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
Col11a1Q61245 Pou2f2-204ENSMUST00000108416 1754 ntTSL 1 (best) BASIC22.86■■□□□ 1.25
Col11a1Q61245 Zfp768-202ENSMUST00000205266 2513 ntAPPRIS ALT2 TSL 5 BASIC22.86■■□□□ 1.25
Col11a1Q61245 Ntn5-201ENSMUST00000107742 1574 ntTSL 1 (best) BASIC22.86■■□□□ 1.25
Col11a1Q61245 Rrad-201ENSMUST00000034351 1577 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
Col11a1Q61245 Tnfaip8-208ENSMUST00000148989 1002 ntAPPRIS P1 TSL 2 BASIC22.86■■□□□ 1.25
Col11a1Q61245 CT030146.1-201ENSMUST00000220919 217 ntBASIC22.86■■□□□ 1.25
Col11a1Q61245 AC175538.2-202ENSMUST00000224997 1057 ntAPPRIS P1 BASIC22.86■■□□□ 1.25
Col11a1Q61245 Vax2-201ENSMUST00000037807 1242 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
Col11a1Q61245 Art5-204ENSMUST00000106937 1713 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
Col11a1Q61245 Gm22240-201ENSMUST00000175225 82 ntBASIC22.85■■□□□ 1.25
Col11a1Q61245 Gnb2-201ENSMUST00000031726 1860 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
Col11a1Q61245 Hpca-204ENSMUST00000116444 1847 ntAPPRIS P1 TSL 5 BASIC22.85■■□□□ 1.25
Col11a1Q61245 Ezh2-203ENSMUST00000114616 2670 ntAPPRIS ALT1 TSL 5 BASIC22.85■■□□□ 1.25
Col11a1Q61245 Arhgdia-202ENSMUST00000106197 1867 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
Col11a1Q61245 Nnat-205ENSMUST00000153739 1146 ntAPPRIS ALT1 TSL 1 (best) BASIC22.85■■□□□ 1.25
Col11a1Q61245 Nnat-206ENSMUST00000172487 404 ntTSL 5 BASIC22.85■■□□□ 1.25
Col11a1Q61245 Nnat-210ENSMUST00000173839 1135 ntTSL 1 (best) BASIC22.85■■□□□ 1.25
Col11a1Q61245 Nudt14-201ENSMUST00000002881 734 ntTSL 2 BASIC22.85■■□□□ 1.25
Retrieved 100 of 76,532 protein–RNA pairs in 16.7 ms