Protein–RNA interactions for Protein: Q5R1H8

Trav8d-1, T cell receptor alpha variable 8D-1 (Fragment), mousemouse

Predictions only

Length 112 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav8d-1Q5R1H8 Dda1-202ENSMUST00000124745 1933 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Trav8d-1Q5R1H8 Man2c1os-201ENSMUST00000125333 1910 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Trav8d-1Q5R1H8 Rela-201ENSMUST00000025867 2716 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Trav8d-1Q5R1H8 Clint1-202ENSMUST00000109261 3365 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
Trav8d-1Q5R1H8 Ccdc149-202ENSMUST00000198008 2470 ntTSL 5 BASIC16.3■□□□□ 0.2
Trav8d-1Q5R1H8 Lsm12-201ENSMUST00000021297 2256 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Trav8d-1Q5R1H8 Nadk2-201ENSMUST00000067760 3731 ntAPPRIS P5 TSL 5 BASIC16.3■□□□□ 0.2
Trav8d-1Q5R1H8 Prpf19-201ENSMUST00000025642 2134 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Trav8d-1Q5R1H8 Wipi1-203ENSMUST00000106689 1220 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Trav8d-1Q5R1H8 Mpv17l2-201ENSMUST00000038626 980 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Trav8d-1Q5R1H8 Cited4-201ENSMUST00000094814 1249 ntAPPRIS P1 BASIC16.3■□□□□ 0.2
Trav8d-1Q5R1H8 Meg3-207ENSMUST00000143836 1896 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Trav8d-1Q5R1H8 Epdr1-201ENSMUST00000002885 2363 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Trav8d-1Q5R1H8 Rnf166-201ENSMUST00000014614 1783 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Trav8d-1Q5R1H8 Neto2-205ENSMUST00000216286 2932 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Trav8d-1Q5R1H8 Dnajc19-203ENSMUST00000117223 1695 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Trav8d-1Q5R1H8 Dlg3-204ENSMUST00000113736 4940 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Trav8d-1Q5R1H8 Samd10-201ENSMUST00000060173 2164 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Trav8d-1Q5R1H8 4930500M09Rik-202ENSMUST00000194988 1563 ntBASIC16.3■□□□□ 0.2
Trav8d-1Q5R1H8 Epc2-201ENSMUST00000092123 4697 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Trav8d-1Q5R1H8 Hhipl1-201ENSMUST00000021685 5174 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Trav8d-1Q5R1H8 Arid1a-202ENSMUST00000105897 8175 ntAPPRIS P2 TSL 5 BASIC16.3■□□□□ 0.2
Trav8d-1Q5R1H8 Mad2l2-201ENSMUST00000030860 1535 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Trav8d-1Q5R1H8 5730507C01Rik-202ENSMUST00000177778 2542 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Trav8d-1Q5R1H8 Atoh8-201ENSMUST00000042646 2355 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Trav8d-1Q5R1H8 3830408C21Rik-205ENSMUST00000225426 1898 ntBASIC16.29■□□□□ 0.2
Trav8d-1Q5R1H8 Rab3il1-201ENSMUST00000113161 2225 ntAPPRIS P3 TSL 5 BASIC16.29■□□□□ 0.2
Trav8d-1Q5R1H8 B130046B21Rik-201ENSMUST00000181510 2216 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Trav8d-1Q5R1H8 Siah1b-201ENSMUST00000037928 1783 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Trav8d-1Q5R1H8 AC102554.1-201ENSMUST00000216236 537 ntTSL 5 BASIC16.29■□□□□ 0.2
Trav8d-1Q5R1H8 Kctd20-204ENSMUST00000122163 2423 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
Trav8d-1Q5R1H8 Cdk5r2-201ENSMUST00000160379 2799 ntAPPRIS P1 BASIC16.29■□□□□ 0.2
Trav8d-1Q5R1H8 Alkbh5-201ENSMUST00000044250 5730 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Trav8d-1Q5R1H8 Tmem86a-201ENSMUST00000010451 1831 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Trav8d-1Q5R1H8 Matn4-203ENSMUST00000109358 2056 ntTSL 5 BASIC16.28■□□□□ 0.2
Trav8d-1Q5R1H8 Fastk-202ENSMUST00000115041 1399 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
Trav8d-1Q5R1H8 Gdf7-202ENSMUST00000220073 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
Trav8d-1Q5R1H8 Gtpbp2-217ENSMUST00000172170 2587 ntTSL 5 BASIC16.28■□□□□ 0.2
Trav8d-1Q5R1H8 Zfp346-203ENSMUST00000159278 1253 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
Trav8d-1Q5R1H8 Tmem127-202ENSMUST00000174288 842 ntTSL 2 BASIC16.28■□□□□ 0.2
Trav8d-1Q5R1H8 Gm29735-201ENSMUST00000209599 660 ntAPPRIS P1 BASIC16.28■□□□□ 0.2
Trav8d-1Q5R1H8 Naa30-205ENSMUST00000153488 4446 ntAPPRIS P2 TSL 1 (best) BASIC16.28■□□□□ 0.2
Trav8d-1Q5R1H8 Usp2-202ENSMUST00000065461 2057 ntAPPRIS P2 TSL 1 (best) BASIC16.28■□□□□ 0.2
Trav8d-1Q5R1H8 Ak2-202ENSMUST00000102604 1781 ntAPPRIS ALT1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Trav8d-1Q5R1H8 Gm2415-201ENSMUST00000128982 1474 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Trav8d-1Q5R1H8 Mtmr9-201ENSMUST00000058679 2570 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Trav8d-1Q5R1H8 Atrn-201ENSMUST00000028781 8745 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Trav8d-1Q5R1H8 Pou2f2-210ENSMUST00000176408 1697 ntTSL 5 BASIC16.27■□□□□ 0.2
Trav8d-1Q5R1H8 Hnrnpl-211ENSMUST00000174548 2679 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.2
Trav8d-1Q5R1H8 Trim71-201ENSMUST00000111816 9332 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Trav8d-1Q5R1H8 Schip1-205ENSMUST00000182532 2059 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
Trav8d-1Q5R1H8 Iars2-203ENSMUST00000110975 2801 ntTSL 5 BASIC16.27■□□□□ 0.2
Trav8d-1Q5R1H8 Slc9a7-201ENSMUST00000072451 2512 ntAPPRIS P2 TSL 1 (best) BASIC16.27■□□□□ 0.2
Trav8d-1Q5R1H8 Abhd11-201ENSMUST00000046999 1493 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
Trav8d-1Q5R1H8 Dll3-201ENSMUST00000108315 2618 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
Trav8d-1Q5R1H8 Cnp-201ENSMUST00000103120 2357 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
Trav8d-1Q5R1H8 Srxn1-201ENSMUST00000041500 2812 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
Trav8d-1Q5R1H8 Setd4-201ENSMUST00000023669 1816 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
Trav8d-1Q5R1H8 Bend7-204ENSMUST00000184139 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
Trav8d-1Q5R1H8 Cstf2-202ENSMUST00000113286 2717 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
Trav8d-1Q5R1H8 Ralgps2-205ENSMUST00000185198 2229 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
Trav8d-1Q5R1H8 Ank1-207ENSMUST00000118733 8201 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
Trav8d-1Q5R1H8 Pou2f2-206ENSMUST00000108418 1934 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
Trav8d-1Q5R1H8 Nrl-203ENSMUST00000178694 1928 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Trav8d-1Q5R1H8 Gse1-202ENSMUST00000118136 4492 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
Trav8d-1Q5R1H8 Fam98c-209ENSMUST00000164589 1293 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
Trav8d-1Q5R1H8 Hgsnat-201ENSMUST00000037609 2694 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Trav8d-1Q5R1H8 Mrpl48-207ENSMUST00000146003 1625 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
Trav8d-1Q5R1H8 Cacng7-201ENSMUST00000092891 2212 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Trav8d-1Q5R1H8 Cpeb3-202ENSMUST00000123727 2411 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
Trav8d-1Q5R1H8 Itga9-201ENSMUST00000044165 7020 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Trav8d-1Q5R1H8 Podxl-201ENSMUST00000026698 5379 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Trav8d-1Q5R1H8 Ttc9b-201ENSMUST00000008088 2052 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Trav8d-1Q5R1H8 Map2k2-207ENSMUST00000143517 2405 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
Trav8d-1Q5R1H8 Faim-202ENSMUST00000112911 803 ntAPPRIS ALT1 TSL 2 BASIC16.25■□□□□ 0.19
Trav8d-1Q5R1H8 Atp8a1-203ENSMUST00000113651 808 ntTSL 5 BASIC16.25■□□□□ 0.19
Trav8d-1Q5R1H8 Bspry-202ENSMUST00000107449 2167 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
Trav8d-1Q5R1H8 Ccdc50-201ENSMUST00000039443 2192 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
Trav8d-1Q5R1H8 Hoxd3-201ENSMUST00000047830 2292 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
Trav8d-1Q5R1H8 Tmem123-201ENSMUST00000052865 2907 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Trav8d-1Q5R1H8 Brsk2-201ENSMUST00000018971 4049 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
Trav8d-1Q5R1H8 C1qtnf5-203ENSMUST00000114818 1337 ntAPPRIS P1 TSL 5 BASIC16.24■□□□□ 0.19
Trav8d-1Q5R1H8 Rexo5-201ENSMUST00000033218 1966 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
Trav8d-1Q5R1H8 Gm37035-201ENSMUST00000194809 2148 ntBASIC16.24■□□□□ 0.19
Trav8d-1Q5R1H8 Luc7l2-201ENSMUST00000057692 2702 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Trav8d-1Q5R1H8 Pdgfa-204ENSMUST00000110897 1287 ntAPPRIS P1 TSL 5 BASIC16.24■□□□□ 0.19
Trav8d-1Q5R1H8 A930002H24Rik-201ENSMUST00000050753 492 ntAPPRIS P1 BASIC16.24■□□□□ 0.19
Trav8d-1Q5R1H8 Hras-202ENSMUST00000097957 1199 ntAPPRIS P1 TSL 2 BASIC16.24■□□□□ 0.19
Trav8d-1Q5R1H8 Gp1bb-202ENSMUST00000167388 1847 ntAPPRIS ALT2 TSL 2 BASIC16.24■□□□□ 0.19
Trav8d-1Q5R1H8 Pnrc1-201ENSMUST00000049357 1648 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Trav8d-1Q5R1H8 Nt5m-201ENSMUST00000102695 1306 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Trav8d-1Q5R1H8 2310035C23Rik-202ENSMUST00000086721 5414 ntAPPRIS ALT2 TSL 5 BASIC16.23■□□□□ 0.19
Trav8d-1Q5R1H8 Pknox2-201ENSMUST00000039674 3632 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Trav8d-1Q5R1H8 Rhoa-201ENSMUST00000007959 2197 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Trav8d-1Q5R1H8 Agtpbp1-222ENSMUST00000171606 3037 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
Trav8d-1Q5R1H8 Lgals3-201ENSMUST00000142734 1419 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Trav8d-1Q5R1H8 Ctsz-201ENSMUST00000016400 1441 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Trav8d-1Q5R1H8 Wdr41-202ENSMUST00000159647 2289 ntTSL 5 BASIC16.23■□□□□ 0.19
Trav8d-1Q5R1H8 Wdr41-206ENSMUST00000167155 2289 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
Trav8d-1Q5R1H8 Ung-202ENSMUST00000102584 2136 ntAPPRIS P3 TSL 1 (best) BASIC16.23■□□□□ 0.19
Retrieved 100 of 76,532 protein–RNA pairs in 34.4 ms